Query psy16520
Match_columns 353
No_of_seqs 154 out of 1545
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 23:24:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_A PDHE1-A type I, pyruvat 100.0 2.2E-53 7.4E-58 414.8 23.1 299 30-350 29-349 (365)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 3.2E-53 1.1E-57 418.8 19.4 310 19-353 56-401 (407)
3 2bfd_A 2-oxoisovalerate dehydr 100.0 1.5E-51 5E-56 406.7 20.9 310 19-352 36-375 (400)
4 1w85_A Pyruvate dehydrogenase 100.0 1.7E-50 6E-55 395.1 22.4 301 19-353 25-356 (368)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 1.8E-48 6.1E-53 381.3 25.2 310 19-353 18-357 (367)
6 2yic_A 2-oxoglutarate decarbox 100.0 1.8E-37 6.1E-42 330.2 13.0 274 30-331 113-450 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 7.6E-37 2.6E-41 332.5 14.2 274 30-331 358-695 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 9.3E-36 3.2E-40 318.7 12.0 274 30-331 193-522 (933)
9 1w85_A Pyruvate dehydrogenase 99.8 4.3E-24 1.5E-28 208.5 -10.2 258 3-303 59-351 (368)
10 2ozl_A PDHE1-A type I, pyruvat 99.8 3.9E-24 1.4E-28 208.4 -13.4 232 3-266 49-314 (365)
11 2bfd_A 2-oxoisovalerate dehydr 99.8 9.8E-24 3.3E-28 208.1 -17.0 232 3-266 70-338 (400)
12 1qs0_A 2-oxoisovalerate dehydr 99.8 5.5E-24 1.9E-28 210.0 -19.0 232 3-266 89-357 (407)
13 1umd_A E1-alpha, 2-OXO acid de 99.7 7.8E-21 2.7E-25 185.5 -13.5 258 3-303 51-352 (367)
14 2xt6_A 2-oxoglutarate decarbox 99.4 7.1E-15 2.4E-19 160.3 -6.3 230 3-266 378-679 (1113)
15 2yic_A 2-oxoglutarate decarbox 99.4 4.5E-15 1.5E-19 158.3 -8.1 230 3-266 133-434 (868)
16 2jgd_A 2-oxoglutarate dehydrog 99.2 3.1E-13 1.1E-17 144.9 -5.7 229 3-266 213-506 (933)
17 2o1s_A 1-deoxy-D-xylulose-5-ph 98.6 8.9E-09 3.1E-13 106.7 1.9 133 30-177 21-156 (621)
18 2o1x_A 1-deoxy-D-xylulose-5-ph 98.3 1.4E-07 4.9E-12 97.8 2.5 131 30-177 23-158 (629)
19 1gpu_A Transketolase; transfer 98.2 3.1E-07 1.1E-11 96.1 2.2 141 126-293 100-281 (680)
20 4feg_A Pyruvate oxidase; carba 98.2 2.3E-07 7.8E-12 95.7 0.8 138 141-311 419-597 (603)
21 2e6k_A Transketolase; structur 98.0 3.5E-07 1.2E-11 95.2 -3.3 131 135-294 111-282 (651)
22 1r9j_A Transketolase; domains, 97.8 9.4E-06 3.2E-10 84.8 4.0 128 136-289 110-278 (673)
23 2r8o_A Transketolase 1, TK 1; 97.6 6.5E-06 2.2E-10 85.9 -0.8 129 135-289 107-276 (669)
24 3rim_A Transketolase, TK; TPP, 97.4 6.4E-05 2.2E-09 78.6 2.7 126 136-287 127-296 (700)
25 1itz_A Transketolase; calvin c 96.9 0.00017 5.6E-09 75.4 0.5 128 136-289 121-290 (675)
26 3uk1_A Transketolase; structur 96.7 0.00031 1.1E-08 73.6 0.5 124 136-287 149-314 (711)
27 4feg_A Pyruvate oxidase; carba 96.6 0.0007 2.4E-08 69.6 2.6 61 198-263 533-598 (603)
28 3mos_A Transketolase, TK; thia 96.5 0.00023 7.8E-09 73.6 -1.8 108 139-275 118-253 (616)
29 3kom_A Transketolase; rossmann 96.5 0.00074 2.5E-08 70.3 1.9 126 136-287 110-276 (663)
30 2qtc_A Pyruvate dehydrogenase 96.2 0.0028 9.5E-08 67.9 4.4 41 137-177 187-234 (886)
31 3m49_A Transketolase; alpha-be 95.8 0.0026 8.9E-08 66.4 1.5 125 136-288 134-301 (690)
32 3l84_A Transketolase; TKT, str 95.7 0.0014 4.9E-08 67.7 -0.6 108 136-271 108-249 (632)
33 1gpu_A Transketolase; transfer 93.1 0.0055 1.9E-07 63.9 -3.7 90 124-238 175-276 (680)
34 2e6k_A Transketolase; structur 89.4 0.017 5.7E-07 60.0 -4.6 94 124-244 177-281 (651)
35 2r8o_A Transketolase 1, TK 1; 87.2 0.018 6.3E-07 59.8 -6.0 91 124-238 173-274 (669)
36 3rim_A Transketolase, TK; TPP, 84.1 0.031 1E-06 58.4 -6.1 73 124-221 195-275 (700)
37 1v5e_A Pyruvate oxidase; oxido 78.0 0.29 9.8E-06 49.9 -1.4 33 141-177 412-444 (590)
38 1r9j_A Transketolase; domains, 77.4 0.15 5.1E-06 53.0 -3.8 91 124-238 175-276 (673)
39 2pan_A Glyoxylate carboligase; 72.8 0.36 1.2E-05 49.4 -2.3 33 141-177 441-473 (616)
40 3uk1_A Transketolase; structur 62.0 0.31 1.1E-05 50.9 -5.4 73 124-221 214-293 (711)
41 2o1s_A 1-deoxy-D-xylulose-5-ph 61.2 0.13 4.5E-06 52.8 -8.4 24 124-148 170-193 (621)
42 3l84_A Transketolase; TKT, str 56.4 0.43 1.5E-05 49.2 -5.5 72 124-220 170-247 (632)
43 3mos_A Transketolase, TK; thia 56.2 0.74 2.5E-05 47.3 -3.8 73 124-222 171-249 (616)
44 3kom_A Transketolase; rossmann 53.9 0.43 1.5E-05 49.5 -6.0 73 124-221 175-255 (663)
45 1itz_A Transketolase; calvin c 52.3 0.94 3.2E-05 47.0 -3.8 73 124-221 186-267 (675)
46 2vk8_A Pyruvate decarboxylase 49.5 3.7 0.00013 41.2 0.2 37 141-177 412-448 (563)
47 2o1x_A 1-deoxy-D-xylulose-5-ph 46.9 1.1 3.8E-05 46.0 -4.3 23 124-147 172-194 (629)
48 2zzd_B Thiocyanate hydrolase s 44.9 30 0.001 28.9 5.1 69 249-325 77-145 (157)
49 3m49_A Transketolase; alpha-be 41.7 1 3.6E-05 46.8 -5.4 72 124-220 199-278 (690)
50 1use_A VAsp, vasodilator-stimu 40.0 49 0.0017 21.6 4.4 24 307-330 5-28 (45)
51 2vbf_A Branched-chain alpha-ke 30.3 18 0.00062 36.2 1.7 34 140-177 423-456 (570)
52 2uz1_A Benzaldehyde lyase; thi 29.9 13 0.00044 37.2 0.5 35 141-177 418-452 (563)
53 1ugp_A NitrIle hydratase alpha 27.5 92 0.0031 26.8 5.3 41 293-333 20-65 (203)
54 3qyh_A CO-type nitrIle hydrata 27.3 79 0.0027 27.8 4.9 40 293-332 40-84 (226)
55 2vbi_A Pyruvate decarboxylase; 26.9 24 0.00081 35.3 1.8 33 141-177 408-440 (566)
56 2wvg_A PDC, pyruvate decarboxy 26.9 23 0.00077 35.4 1.7 33 141-177 412-444 (568)
57 1ybh_A Acetolactate synthase, 26.6 20 0.00069 36.0 1.3 33 141-177 425-457 (590)
58 1ozh_A ALS, acetolactate synth 26.3 23 0.0008 35.4 1.7 33 141-177 419-451 (566)
59 4fm4_A NitrIle hydratase alpha 26.2 81 0.0028 27.4 4.8 40 293-332 13-57 (209)
60 1ovm_A Indole-3-pyruvate decar 25.7 19 0.00065 35.7 0.9 33 141-177 407-439 (552)
61 3a8g_A NitrIle hydratase subun 24.0 76 0.0026 27.6 4.2 40 293-332 23-67 (207)
62 2iht_A Carboxyethylarginine sy 22.3 27 0.00092 34.9 1.2 33 141-177 435-467 (573)
63 2nxw_A Phenyl-3-pyruvate decar 21.8 27 0.00093 34.8 1.1 32 142-177 422-453 (565)
64 3hht_A NitrIle hydratase alpha 21.7 1.1E+02 0.0038 26.7 4.8 40 293-332 29-73 (216)
65 2pgn_A Cyclohexane-1,2-dione h 21.5 36 0.0012 34.1 2.0 32 142-177 424-455 (589)
66 3hht_B NitrIle hydratase beta 21.0 1.8E+02 0.0062 25.6 6.2 27 292-318 76-102 (229)
67 2c31_A Oxalyl-COA decarboxylas 20.9 27 0.00093 34.8 0.9 32 141-177 425-456 (568)
68 1t9b_A Acetolactate synthase, 20.5 40 0.0014 34.6 2.1 32 142-177 513-544 (677)
69 2q28_A Oxalyl-COA decarboxylas 20.0 29 0.00099 34.5 0.9 33 140-177 419-451 (564)
70 1q6z_A BFD, BFDC, benzoylforma 20.0 31 0.0011 34.0 1.1 32 142-177 401-432 (528)
No 1
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=2.2e-53 Score=414.85 Aligned_cols=299 Identities=22% Similarity=0.338 Sum_probs=265.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHH
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQ 108 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~ 108 (353)
+.+++++++.+||.|+++|.||+++..++++|++ ||+|++.|||++++|+..+|+++|+|+++||+|++++++|.++..
T Consensus 29 ~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~~~ 108 (365)
T 2ozl_A 29 TVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVRE 108 (365)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCHHH
Confidence 3678999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------h
Q psy16520 109 MIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------V 178 (353)
Q Consensus 109 ~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a 178 (353)
++++++|+.+|+++|+++++|+.+ .|+++.++++|.++|.|+|+|+|.++.+.+.+++|++|||+++ |
T Consensus 109 i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A 186 (365)
T 2ozl_A 109 ILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMA 186 (365)
T ss_dssp HHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHH
Confidence 999999999999999999999966 4899999999999999999999998888889999999999988 2
Q ss_pred h------hcccccccccccccccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehh
Q psy16520 179 T------MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRF 247 (353)
Q Consensus 179 ~------is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~ 247 (353)
+ |+++.||+++.++.. .+..+.+.| .. .-+|+++.. |+.+++.+.++|.+++|++ +|+++
T Consensus 187 ~~~~lpvi~vv~NN~~g~~t~~-~~~~~~~~~----~~---ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lI- 257 (365)
T 2ozl_A 187 ALWKLPCIFICENNRYGMGTSV-ERAAASTDY----YK---RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILM- 257 (365)
T ss_dssp HHTTCCEEEEEEECSEETTEEH-HHHCSCCCG----GG---TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEE-
T ss_pred HHHCcCEEEEEECCCcccCCCc-ccccCCCCH----HH---HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEE-
Confidence 1 777788888764410 011111222 00 011555443 8999999999999999887 99999
Q ss_pred HHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy16520 248 KTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIR 327 (353)
Q Consensus 248 ~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~ 327 (353)
|+.|||..|||++|++..||+++|+++|+++.||+.+|+++|+++|++|++++++++++++++|+++++
T Consensus 258 -----------e~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~ 326 (365)
T 2ozl_A 258 -----------ELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 326 (365)
T ss_dssp -----------EEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------EEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888999999999986325999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHhHHhhccccCCCC
Q psy16520 328 ISEKKLKPSWKEMFEDVYHEMPP 350 (353)
Q Consensus 328 ~a~~~~~p~~~~~~~~v~~~~~~ 350 (353)
+|+++|.|+++++|+|||+++|+
T Consensus 327 ~a~~~p~p~~~~~~~~vy~~~~~ 349 (365)
T 2ozl_A 327 FATADPEPPLEELGYHIYSSDPP 349 (365)
T ss_dssp HHHHSCCCCGGGTTCSSSSSCCC
T ss_pred HHHhCCCCCHHHHHhhhcCCCCh
Confidence 99999999999999999998766
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=3.2e-53 Score=418.79 Aligned_cols=310 Identities=33% Similarity=0.463 Sum_probs=276.1
Q ss_pred ccCCCCCCc--cCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcch
Q psy16520 19 YSGSNGQSS--HLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRET 96 (353)
Q Consensus 19 ~~~~~Gqea--~~~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~ 96 (353)
++..+|+-. ..+.+++++++.+||.|+++|.||+++..++++||++|+|++.|||++++|++.+|+++|+|+++||+|
T Consensus 56 ~ld~~g~~~~~~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~ 135 (407)
T 1qs0_A 56 VLDEQGDAQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQ 135 (407)
T ss_dssp CBCTTSCBCSGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCH
T ss_pred EECCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEEecccch
Confidence 345555421 224789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchh
Q psy16520 97 GVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAA 176 (353)
Q Consensus 97 g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~ 176 (353)
+++|++|+++.+++++++|+.++.++|+++|+||..++.|+++.++++|.++|.|+|.|+|.++.+.+.+++|++|||++
T Consensus 136 ~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~ 215 (407)
T 1qs0_A 136 SILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGAT 215 (407)
T ss_dssp HHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGG
T ss_pred HHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchh
Confidence 99999999999999999999999999999999999988899999999999999999999999887888999999999998
Q ss_pred h----------hh------hcccccccccccccc-------cCcccCCCcccccccccccccccCCCcc----ChhHhhc
Q psy16520 177 I----------VT------MATPFQPQRRNSMEE-------MGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYR 229 (353)
Q Consensus 177 ~----------a~------is~~~~~q~~~~~~~-------~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr 229 (353)
+ |+ |.++.||+++.++.. ..++.++.+| |+++.. |+.+++.
T Consensus 216 ~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~------------G~~~~~VdG~D~~av~~ 283 (407)
T 1qs0_A 216 AESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGC------------GIASLRVDGNDFVAVYA 283 (407)
T ss_dssp GSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHT------------TCEEEEEETTCHHHHHH
T ss_pred hcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHc------------CCeEEEEcCCCHHHHHH
Confidence 7 21 677778877764310 1122233334 666654 7889999
Q ss_pred CHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCH
Q psy16520 230 SKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSE 308 (353)
Q Consensus 230 ~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~ 308 (353)
+.++|.+++|++ +|+++ |+.|+|..|||++||+..||+++|++.|.++ ||+.+|+++|+++|+||+
T Consensus 284 a~~~A~~~ar~~~gP~lI------------e~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~~-DPi~~~~~~L~~~g~~~~ 350 (407)
T 1qs0_A 284 ASRWAAERARRGLGPSLI------------EWVTYRAGPHSTSDDPSKYRPADDWSHFPLG-DPIARLKQHLIKIGHWSE 350 (407)
T ss_dssp HHHHHHHHHHTTSCCEEE------------EEECCCCSCSSTTCCGGGTSCTTHHHHCTTC-CHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHHhcCCCEEE------------EEEeeccCCcCCCCCccccCCHHHHHHHhcC-CHHHHHHHHHHHCCCCCH
Confidence 999999999887 99999 9999999999999999999999999999988 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCCCHhHHhhccccCCCCCCC
Q psy16520 309 KQDEQLKKESKQLVLNSIRISEK------KLKPSWKEMFEDVYHEMPPHIR 353 (353)
Q Consensus 309 ~e~~~~~~e~~~~v~~a~~~a~~------~~~p~~~~~~~~v~~~~~~~~~ 353 (353)
+++++++++++++|++++++|++ +|.|+++++|+|||+++||+|+
T Consensus 351 ~~~~~i~~~~~~~v~~a~~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~ 401 (407)
T 1qs0_A 351 EEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 401 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHhhccCCCCHHHH
Confidence 99999999999999999999999 5899999999999999999873
No 3
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=1.5e-51 Score=406.74 Aligned_cols=310 Identities=45% Similarity=0.724 Sum_probs=258.0
Q ss_pred ccCCCCCCc---cCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcc
Q psy16520 19 YSGSNGQSS---HLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRE 95 (353)
Q Consensus 19 ~~~~~Gqea---~~~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~ 95 (353)
++..+|+-. ..+.+++++++.+||.|+++|.||+++.+++++||++|+|++.|||++++|++.+|+++|+|+++||+
T Consensus 36 ~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~ 115 (400)
T 2bfd_A 36 VMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQARE 115 (400)
T ss_dssp SBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCC
T ss_pred EECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhcCCCCEEEecCcC
Confidence 556666422 22478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecch
Q psy16520 96 TGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175 (353)
Q Consensus 96 ~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~ 175 (353)
|++++++|.++.+++.+++|+.+++++|+++|+|+..++.|+++.++++|.++|.|+|.|+|.++.+.+.+++|++|||+
T Consensus 116 ~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa 195 (400)
T 2bfd_A 116 AGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGA 195 (400)
T ss_dssp HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTG
T ss_pred HHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchh
Confidence 99999999999999999999999999999999999998889999999999999999999999998788899999999999
Q ss_pred hh----------hh------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhc
Q psy16520 176 AI----------VT------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYR 229 (353)
Q Consensus 176 ~~----------a~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr 229 (353)
+. |+ |.++.||+++.++. ....+.++.+| |+++.. |+.+++.
T Consensus 196 ~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~------------G~~~~~VdG~D~~av~~ 263 (400)
T 2bfd_A 196 ASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY------------GIMSIRVDGNDVFAVYN 263 (400)
T ss_dssp GGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG------------TCEEEEEETTCHHHHHH
T ss_pred hhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHc------------CCcEEEEeCCCHHHHHH
Confidence 98 21 56666676665331 13345555566 777654 7889999
Q ss_pred CHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCH
Q psy16520 230 SKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSE 308 (353)
Q Consensus 230 ~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~ 308 (353)
+.++|.+++|++ +|+++ ++.|||+.|||++|++..||+++|++.|..++||+.+++++|++.|++++
T Consensus 264 a~~~A~~~ar~~~~P~lI------------e~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~ 331 (400)
T 2bfd_A 264 ATKEARRRAVAENQPFLI------------EAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDE 331 (400)
T ss_dssp HHHHHHHHHHHHTCCEEE------------EEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCH
T ss_pred HHHHHHHHHHhCCCCEEE------------EEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCCh
Confidence 999999998876 99999 99999999999999989999999999999886799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHhhccccCCCCCC
Q psy16520 309 KQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHI 352 (353)
Q Consensus 309 ~e~~~~~~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~ 352 (353)
++++++++++.++|+++++.|++.|.|+|+++|++||+++||+|
T Consensus 332 ~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l 375 (400)
T 2bfd_A 332 EQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQL 375 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHH
Confidence 99999999999999999999999999999999999999988765
No 4
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=1.7e-50 Score=395.07 Aligned_cols=301 Identities=24% Similarity=0.415 Sum_probs=259.9
Q ss_pred ccCCCCCC---ccCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcc
Q psy16520 19 YSGSNGQS---SHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRE 95 (353)
Q Consensus 19 ~~~~~Gqe---a~~~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~ 95 (353)
++..+|.- ...+.+++++++.+||.|+++|.||+++.+++++||+||+|++.|||++++|++.+|+++|+++++||+
T Consensus 25 ~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~ 104 (368)
T 1w85_A 25 ILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRD 104 (368)
T ss_dssp SBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCEEECCSSC
T ss_pred EECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCEEEecchh
Confidence 45666642 222468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecch
Q psy16520 96 TGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175 (353)
Q Consensus 96 ~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~ 175 (353)
|++++++|.++..++++++|+.+ |..+ | ++.|+++.++++|.++|.|+|.|+|.++.+.+.+++|++|||+
T Consensus 105 ~~~~~~~G~~~~~~~~el~G~~~----G~~~--h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa 175 (368)
T 1w85_A 105 VPQIIWHGLPLYQAFLFSRGHFH----GNQI--P---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGG 175 (368)
T ss_dssp HHHHHHTTCCHHHHHHHHHTCGG----GGCC--C---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGG
T ss_pred HHHHHhcCCCHHHHHHHHCCCCC----CCCC--C---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhh
Confidence 99999999999999999999865 3334 4 3678999999999999999999999988888899999999999
Q ss_pred hh----------hh------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhc
Q psy16520 176 AI----------VT------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYR 229 (353)
Q Consensus 176 ~~----------a~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr 229 (353)
++ |+ |.++.||+++.++. ....+.++.+| |+++.. |+.+++.
T Consensus 176 ~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~------------G~~~~~VdG~D~~av~~ 243 (368)
T 1w85_A 176 TSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAA------------GIPGIQVDGMDPLAVYA 243 (368)
T ss_dssp GGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGT------------TCCEEEEETTCHHHHHH
T ss_pred hhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHC------------CCCEEEEcCCCHHHHHH
Confidence 99 11 66677777665331 12334445555 777654 7899999
Q ss_pred CHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccC-CCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q psy16520 230 SKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHS-TSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWS 307 (353)
Q Consensus 230 ~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs-~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t 307 (353)
+.++|.+++|++ +|+++ |+.|+|..||| ++||+..||+++|++.|.++ ||+.+|+++|+++|++|
T Consensus 244 a~~~A~~~~r~~~gP~lI------------e~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~~-dPi~~~~~~L~~~g~~~ 310 (368)
T 1w85_A 244 AVKAARERAINGEGPTLI------------ETLCFRYGPHTMSGDDPTRYRSKELENEWAKK-DPLVRFRKFLEAKGLWS 310 (368)
T ss_dssp HHHHHHHHHHTTSCCEEE------------EEECCCSSCSCSSCC------CHHHHHHHHTT-CHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCCEEE------------EEEeeccCCCCCCCCCccccCCHHHHHHHhcC-CHHHHHHHHHHHcCCCC
Confidence 999999999887 99999 99999999999 99999999999999999998 59999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520 308 EKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353 (353)
Q Consensus 308 ~~e~~~~~~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~ 353 (353)
++++++++++++++|++++++|+++|.|+++++|+|||+++||+|+
T Consensus 311 ~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~l~ 356 (368)
T 1w85_A 311 EEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLK 356 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccCCCChHHH
Confidence 9999999999999999999999999999999999999999999863
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.8e-48 Score=381.28 Aligned_cols=310 Identities=28% Similarity=0.453 Sum_probs=277.7
Q ss_pred ccCCCCCCc--cCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCC-CeeEecCcc
Q psy16520 19 YSGSNGQSS--HLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPE-DLVYAQYRE 95 (353)
Q Consensus 19 ~~~~~Gqea--~~~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~-D~v~~~yR~ 95 (353)
+...+|.-. ....++++++..+||.|..+|.|+..+..++++|++|++|++.|+|++++|+..+++++ |+++++||+
T Consensus 18 ~l~~~g~~~~~~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~ 97 (367)
T 1umd_A 18 LIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRD 97 (367)
T ss_dssp CBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTT
T ss_pred EECCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHH
Confidence 456666422 12468999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecch
Q psy16520 96 TGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175 (353)
Q Consensus 96 ~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~ 175 (353)
+++++.+|.++.+++.+++|+.+|++.|+++|+|+..++.|+++.++++|.+++.|+|.|+|.+..+.+.+++|++|||+
T Consensus 98 ~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa 177 (367)
T 1umd_A 98 HGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGA 177 (367)
T ss_dssp HHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGG
T ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccc
Confidence 99999999999999999999999999999999999988889999999999999999999999988777889999999999
Q ss_pred hh----------hh------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhc
Q psy16520 176 AI----------VT------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYR 229 (353)
Q Consensus 176 ~~----------a~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr 229 (353)
+. |+ |.++.+|+++.++. ....+.++.+| |+++.. |+.++|+
T Consensus 178 ~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~------------G~~~~~Vdg~d~~av~~ 245 (367)
T 1umd_A 178 TSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAF------------GIPGYLVDGMDVLASYY 245 (367)
T ss_dssp GGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGT------------TSCEEEEETTCHHHHHH
T ss_pred cccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHc------------CCcEEEeCCCCHHHHHH
Confidence 88 11 66777777665331 12344455555 776654 8889999
Q ss_pred CHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCH
Q psy16520 230 SKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSE 308 (353)
Q Consensus 230 ~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~ 308 (353)
+.+++.++++++ +|+++ ++.|+|..|||++|+++.||+++|++.|.++ ||+.+|+++|+++|++|+
T Consensus 246 a~~~A~~~a~~~~gP~lI------------e~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~~-dPi~~~~~~L~~~g~~~~ 312 (367)
T 1umd_A 246 VVKEAVERARRGEGPSLV------------ELRVYRYGPHSSADDDSRYRPKEEVAFWRKK-DPIPRFRRFLEARGLWNE 312 (367)
T ss_dssp HHHHHHHHHHTTCCCEEE------------EEECCCCSCSSTTCCGGGTSCHHHHHHHHTT-CHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHhcCCCEEE------------EEEeecCCCCCCCCCccccCCHHHHHHHHcC-CHHHHHHHHHHhCCCCCH
Confidence 999999998886 99999 9999999999999999999999999999998 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520 309 KQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353 (353)
Q Consensus 309 ~e~~~~~~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~ 353 (353)
+++++++++++++|++++++|+++|.|+++++|+|||+++||+|+
T Consensus 313 ~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~ 357 (367)
T 1umd_A 313 EWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLL 357 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCCChhHH
Confidence 999999999999999999999999999999999999999998863
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.8e-37 Score=330.18 Aligned_cols=274 Identities=11% Similarity=0.050 Sum_probs=223.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhc------CCCCCeeEe-cCcchHHHHH-
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAA------LDPEDLVYA-QYRETGVLMW- 101 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~a------l~~~D~v~~-~yR~~g~~la- 101 (353)
+.+++++++.+||.|+++|.||+++..++.+||. .+..|||++++|+..+ ++++|++++ +||+|+++|+
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~---~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan 189 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 189 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 4679999999999999999999999999988774 3359999999998866 568999998 8999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccccCCC------------Cccccccccccchhhhhhhhcceeeec----
Q psy16520 102 -RGFSVEQMIDQLYGNIGSS-D-KGKQMPVHYGSRQH------------HFVTISSPLATQLPQAVGSAYAYKLKK---- 162 (353)
Q Consensus 102 -~G~~~~~~~~~~~g~~~g~-s-~G~~~p~h~~~~e~------------n~~~~ss~vg~q~~~a~G~A~g~~~~~---- 162 (353)
+|.++.++|++++|+.+++ + .|+++++||..... |+.++++++|.+.|+|+|.|+|.+..+
T Consensus 190 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~ 269 (868)
T 2yic_A 190 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 269 (868)
T ss_dssp TTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCc
Confidence 9999999999999998776 3 67788999876432 445678999999999999999988543
Q ss_pred ------CCcEEEEEeecchh-h----------hh---------hccccccccccccc-c-----cCcccCCCcccccccc
Q psy16520 163 ------NEKVVIVYFGEGAA-I----------VT---------MATPFQPQRRNSME-E-----MGSRPEGLAWVFQPLE 210 (353)
Q Consensus 163 ------g~~v~~v~~Gdg~~-~----------a~---------is~~~~~q~~~~~~-~-----~~~a~rgp~~~~~~~~ 210 (353)
.+.+++|++|||+. + |+ |+++.||+++.++. . ...+.++.+|
T Consensus 270 ~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~------ 343 (868)
T 2yic_A 270 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMI------ 343 (868)
T ss_dssp TSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGG------
T ss_pred ccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccccCHHHHHHhC------
Confidence 56799999999994 4 11 66777888887551 1 1123344445
Q ss_pred cccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHH
Q psy16520 211 LTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQE 285 (353)
Q Consensus 211 ~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~ 285 (353)
|+++.. |+.++|++.++|.+++|++ +|+++ |+.|||..|||++|+++ |+.+++++.
T Consensus 344 ------G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlI------------e~~tyR~~GHs~~D~p~-~~~p~~~~~ 404 (868)
T 2yic_A 344 ------GAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVI------------DMLCYRRRGHNEGDDPS-MTQPYMYDV 404 (868)
T ss_dssp ------TCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEE------------EEECCCCSCSSTTCCGG-GTCHHHHHH
T ss_pred ------CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEE------------EEEeecCCCcCcccccc-cCChHHHHH
Confidence 777655 8999999999999999876 99999 99999999999999986 566677777
Q ss_pred HHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16520 286 YEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEK 331 (353)
Q Consensus 286 ~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~ 331 (353)
|.+++||+.+|+++|+++|++|++++++++++++++|++++++|++
T Consensus 405 ~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 450 (868)
T 2yic_A 405 IDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 450 (868)
T ss_dssp HTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765579999999999999999999999999999999999999987
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.6e-37 Score=332.52 Aligned_cols=274 Identities=11% Similarity=0.050 Sum_probs=222.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhc------CCCCCeeEe-cCcchHHHHH-
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAA------LDPEDLVYA-QYRETGVLMW- 101 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~a------l~~~D~v~~-~yR~~g~~la- 101 (353)
+.+++++++.+||.|+++|.||+++..++++||. .+..|||++++|+..+ ++++|++++ +||+|+++|+
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~---~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~ 434 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 434 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 4679999999999999999999999999988874 2349999999998666 668999998 8999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccccCCC------------Cccccccccccchhhhhhhhcceeeec----
Q psy16520 102 -RGFSVEQMIDQLYGNIGSS-D-KGKQMPVHYGSRQH------------HFVTISSPLATQLPQAVGSAYAYKLKK---- 162 (353)
Q Consensus 102 -~G~~~~~~~~~~~g~~~g~-s-~G~~~p~h~~~~e~------------n~~~~ss~vg~q~~~a~G~A~g~~~~~---- 162 (353)
+|.++.++|++++|+.+++ + +|+++++||..... |+.++++++|.+.|+|+|.|+|.+..+
T Consensus 435 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~ 514 (1113)
T 2xt6_A 435 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 514 (1113)
T ss_dssp TTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccC
Confidence 9999999999999998776 3 57788999876432 445678999999999999999998543
Q ss_pred ------CCcEEEEEeecchh-h----------hh---------hccccccccccccc-c-----cCcccCCCcccccccc
Q psy16520 163 ------NEKVVIVYFGEGAA-I----------VT---------MATPFQPQRRNSME-E-----MGSRPEGLAWVFQPLE 210 (353)
Q Consensus 163 ------g~~v~~v~~Gdg~~-~----------a~---------is~~~~~q~~~~~~-~-----~~~a~rgp~~~~~~~~ 210 (353)
.+.+++|++|||+. + |+ |+++.+||++.++. . .....++.+|
T Consensus 515 ~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~~~a~a~------ 588 (1113)
T 2xt6_A 515 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMI------ 588 (1113)
T ss_dssp TSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGG------
T ss_pred ccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHHHHHHhc------
Confidence 56899999999994 4 11 66777888887551 1 1122344445
Q ss_pred cccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHH
Q psy16520 211 LTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQE 285 (353)
Q Consensus 211 ~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~ 285 (353)
|+++.. |+.++|++.++|.+++|++ +|+++ |+.|||..|||++|++. |+.+++++.
T Consensus 589 ------G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlI------------e~~tyR~~GHs~~D~p~-~~~~~~~~~ 649 (1113)
T 2xt6_A 589 ------GAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVI------------DMLCYRRRGHNEGDDPS-MTQPYMYDV 649 (1113)
T ss_dssp ------TCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEE------------EEECCCCSCSSTTCCGG-GTCHHHHHH
T ss_pred ------CCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE------------EEEeEccCCcCCCCccc-cCChHHHHH
Confidence 777665 9999999999999999876 99999 99999999999999986 555667777
Q ss_pred HHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16520 286 YEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEK 331 (353)
Q Consensus 286 ~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~ 331 (353)
|.+++||+.+|+++|+++|++|++++++++++++++|++++++|++
T Consensus 650 ~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 695 (1113)
T 2xt6_A 650 IDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 695 (1113)
T ss_dssp HTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765569999999999999999999999999999999999999988
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=9.3e-36 Score=318.66 Aligned_cols=274 Identities=11% Similarity=0.071 Sum_probs=217.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHH------HhcCCCCCeeEe-cCcchHHHHH-
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGS------AAALDPEDLVYA-QYRETGVLMW- 101 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~------~~al~~~D~v~~-~yR~~g~~la- 101 (353)
+.+++|+++.+||.|+++|.||+++..++++|| ..+..|||++++|+ +.+++++|+|++ +||+|+++|+
T Consensus 193 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gk---rf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~~hRg~~~~Lan 269 (933)
T 2jgd_A 193 ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAK---RFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVN 269 (933)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCchHHHHHHHHHHHHHhhCCCCCEEecCCCcCHHHHHHH
Confidence 468999999999999999999999999999887 23468999999984 445567999996 8999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCC----------ccccccccccchhhhhhhhcceeee-----cCCc
Q psy16520 102 -RGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHH----------FVTISSPLATQLPQAVGSAYAYKLK-----KNEK 165 (353)
Q Consensus 102 -~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n----------~~~~ss~vg~q~~~a~G~A~g~~~~-----~g~~ 165 (353)
+|.++.++|+|++|+.++.++|+++++|+.....+ ..+.++++|.+.|+|+|.|+|.+.. +.+.
T Consensus 270 ~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~ 349 (933)
T 2jgd_A 270 VLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKV 349 (933)
T ss_dssp TTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGE
T ss_pred HhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCe
Confidence 99999999999999988888889999999875533 2477889999999999999998865 3678
Q ss_pred EEEEEeecchh-h----------h---------hhcccccccccccc-cc------cCcccCCCcccccccccccccccC
Q psy16520 166 VVIVYFGEGAA-I----------V---------TMATPFQPQRRNSM-EE------MGSRPEGLAWVFQPLELTETTIGH 218 (353)
Q Consensus 166 v~~v~~Gdg~~-~----------a---------~is~~~~~q~~~~~-~~------~~~a~rgp~~~~~~~~~~~~r~~~ 218 (353)
+++|++|||+. + | .|.+..+|+++.++ +. ...+.++.+| |+
T Consensus 350 ~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~a~------------g~ 417 (933)
T 2jgd_A 350 LPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV------------QA 417 (933)
T ss_dssp EEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGGTT------------TC
T ss_pred EEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHHHc------------CC
Confidence 99999999996 4 1 16667788877643 11 1123334444 77
Q ss_pred CCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChH
Q psy16520 219 HSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPI 293 (353)
Q Consensus 219 hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~ 293 (353)
++.. |+.++|++.++|.+++|+. +|+++ |+.|||..||+++|++. ||++++++.|.+++||+
T Consensus 418 p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lI------------e~~tyR~~GH~~~D~~~-yr~~~e~~~~~~~~dPi 484 (933)
T 2jgd_A 418 PIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI------------DLVCYRRHGHNEADEPS-ATQPLMYQKIKKHPTPR 484 (933)
T ss_dssp CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEE------------EEECCCCC------------CCTTHHHHHTSCCHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEE------------EEeeeeecCcCcccchh-hCCHHHHHHHHccCCHH
Confidence 7653 8999999999999998876 99999 99999999999999865 99999999999865699
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16520 294 LRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEK 331 (353)
Q Consensus 294 ~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~ 331 (353)
.+|+++|+++|++|++++++++++++++|+++++.|++
T Consensus 485 ~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~ 522 (933)
T 2jgd_A 485 KIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAE 522 (933)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887
No 9
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.84 E-value=4.3e-24 Score=208.47 Aligned_cols=258 Identities=21% Similarity=0.258 Sum_probs=168.4
Q ss_pred cccCCccchhccccccccCCCCCCccCC----CCC-HHHHHHHHHHHHH--HHhH--HHHHHHHHHcCCccccccCC---
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLS----NVD-NETNIRMYKTMVT--LNEM--DKVMYESQRQGRISFYMTSS--- 70 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~----~l~-~d~l~~~yr~m~~--~R~~--d~~~~~l~~~Gk~g~~h~~~--- 70 (353)
+|+++..+++||+||||+++.|||+.++ .|. .|.++.+||++.+ +++. ...+.+++..-.++.||...
T Consensus 59 fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~~~~~~el~G~~~G~~~h~~~~~~ 138 (368)
T 1w85_A 59 LDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVL 138 (368)
T ss_dssp HHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCTTCCBC
T ss_pred HHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCHHHHHHHHCCCCCCCCCCcccccC
Confidence 5777788999999999999999999765 564 5777888999754 3443 45666765321134555321
Q ss_pred ------C-chhHHHHHHhcCC---CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCcccc
Q psy16520 71 ------G-EEGSHVGSAAALD---PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTI 140 (353)
Q Consensus 71 ------G-~Ea~~vg~~~al~---~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ 140 (353)
| +-++++|++.+.+ ++..+++ +-|.|... .| .+.|.+.- ..-+++|++|++ .||.|++
T Consensus 139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~-i~GDGa~~-~G-----~~~Eal~~----A~~~~lpvi~vv-~NN~~gi 206 (368)
T 1w85_A 139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAIT-YTGDGGTS-QG-----DFYEGINF----AGAFKAPAIFVV-QNNRFAI 206 (368)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEE-EEETGGGG-SH-----HHHHHHHH----HHHTTCCEEEEE-EECSEET
T ss_pred CCccccCccccHHHHHHHHhHhhCCCCeEEE-EEchhhhh-hc-----HHHHHHHH----HHHHCcCEEEEE-EcCCccc
Confidence 1 2344455555432 2222332 22333211 11 12111110 012678999999 8999999
Q ss_pred ccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCcccccccccccc
Q psy16520 141 SSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTET 214 (353)
Q Consensus 141 ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~ 214 (353)
++++..+.+. .++.+||++ .+||+|+..++..-..+. +.++.+++|.+ |++.||
T Consensus 207 ~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~----------------~~~r~~~gP~l----Ie~~t~ 266 (368)
T 1w85_A 207 STPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAAR----------------ERAINGEGPTL----IETLCF 266 (368)
T ss_dssp TEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHH----------------HHHHTTSCCEE----EEEECC
T ss_pred eeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHH----------------HHHHhcCCCEE----EEEEee
Confidence 9988776542 467888876 678877766655544443 24456789999 999999
Q ss_pred cccCCC-ccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHH----HHh-
Q psy16520 215 TIGHHS-TSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQE----YEI- 288 (353)
Q Consensus 215 r~~~hs-~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~----~~~- 288 (353)
|.++|+ .+|....||+.+|...|. ++||+.+|+++|+++|+|++++...+... + ++++++ ...
T Consensus 267 r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~--------~--~~~v~~a~~~a~~~ 335 (368)
T 1w85_A 267 RYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQ--------A--KEEIKEAIKKADET 335 (368)
T ss_dssp CSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHH--------H--HHHHHHHHHHHHTS
T ss_pred ccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHH--------H--HHHHHHHHHHHHhC
Confidence 999999 887668999999999996 57999999999999999999999988521 1 222222 221
Q ss_pred -cCChHHHHHHHHhhc
Q psy16520 289 -NNNPILRFKTLLFKK 303 (353)
Q Consensus 289 -~ddP~~~~~~~l~~~ 303 (353)
.++|...|.++|.+.
T Consensus 336 p~p~~~~~~~~vy~~~ 351 (368)
T 1w85_A 336 PKQKVTDLISIMFEEL 351 (368)
T ss_dssp CCCCHHHHHHTSCSSC
T ss_pred CCCCHHHHHhhccCCC
Confidence 136888999998763
No 10
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.83 E-value=3.9e-24 Score=208.37 Aligned_cols=232 Identities=16% Similarity=0.198 Sum_probs=161.4
Q ss_pred cccCCccchhcccc-ccccCCCCCCccCC----CC-CHHHHHHHHHHHHH--HHhH--HHHHHHHHH------cCCcccc
Q psy16520 3 IENASGPCFKKERL-GRYSGSNGQSSHLS----NV-DNETNIRMYKTMVT--LNEM--DKVMYESQR------QGRISFY 66 (353)
Q Consensus 3 ~e~~~~~~~~~g~~-~~~~~~~Gqea~~~----~l-~~d~l~~~yr~m~~--~R~~--d~~~~~l~~------~Gk~g~~ 66 (353)
+|+++..+||||+| |||+++.|||+.++ +| ..|+++..||.+.+ +|++ ...+.+++. +|+.|.|
T Consensus 49 ~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~ 128 (365)
T 2ozl_A 49 MELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSM 128 (365)
T ss_dssp HHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTT
T ss_pred HHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCC
Confidence 57889999999999 89999999999765 56 36778888999754 4554 466777762 3666788
Q ss_pred ccCC----------C-chhHHHHHHhcCC---CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCcccccc
Q psy16520 67 MTSS----------G-EEGSHVGSAAALD---PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGS 132 (353)
Q Consensus 67 h~~~----------G-~Ea~~vg~~~al~---~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~ 132 (353)
|++. | +-++++|++.+.+ ++..+++ +-|.|. +..| .+.|.+.- ..-+++|++|+|
T Consensus 129 H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~-~~GDGa-~~~G-----~~~Ealn~----A~~~~lpvi~vv 197 (365)
T 2ozl_A 129 HMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLT-LYGDGA-ANQG-----QIFEAYNM----AALWKLPCIFIC 197 (365)
T ss_dssp CCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEE-EEETTG-GGCH-----HHHHHHHH----HHHTTCCEEEEE
T ss_pred CcCccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEE-EECchh-hhcc-----HHHHHHHH----HHHHCcCEEEEE
Confidence 8531 1 2344455555443 1222222 223322 1111 12221110 012678999999
Q ss_pred CCCCccccccccccchhh--hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCcccccc
Q psy16520 133 RQHHFVTISSPLATQLPQ--AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQP 208 (353)
Q Consensus 133 ~e~n~~~~ss~vg~q~~~--a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~ 208 (353)
+||.|+++++...+... -...+++++ .+||+|+..++..-..+. +..+.++||.+
T Consensus 198 -~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~VdG~D~~av~~a~~~A~----------------~~~r~~~gP~l---- 256 (365)
T 2ozl_A 198 -ENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAA----------------AYCRSGKGPIL---- 256 (365)
T ss_dssp -EECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHHHHH----------------HHHHTTCCCEE----
T ss_pred -ECCCcccCCCcccccCCCCHHHHhCCCCEEEEeCCCHHHHHHHHHHHH----------------HHHHhCCCCEE----
Confidence 89999999986655421 112456665 678888777666554443 25567899999
Q ss_pred cccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 209 LELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 209 ~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
||+.|||.++|+.+|+...||+.++...|...+||+.+|+++|+++|+|++++...+.
T Consensus 257 Ie~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~ 314 (365)
T 2ozl_A 257 MELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEID 314 (365)
T ss_dssp EEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred EEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999998678999999999863359999999999999999999999885
No 11
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.80 E-value=9.8e-24 Score=208.06 Aligned_cols=232 Identities=22% Similarity=0.269 Sum_probs=143.3
Q ss_pred cccCCccchhccccccccCCCCCCccCC----CCC-HHHHHHHHHHHHH--HHhH--HHHHHHHHHc------CCccccc
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLS----NVD-NETNIRMYKTMVT--LNEM--DKVMYESQRQ------GRISFYM 67 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~----~l~-~d~l~~~yr~m~~--~R~~--d~~~~~l~~~------Gk~g~~h 67 (353)
+|+++..+|+||+|+||+++.||||.++ +|. .|.++..||.+.+ .|++ ++.+.+++.. |+.+.+|
T Consensus 70 fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H 149 (400)
T 2bfd_A 70 MDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVH 149 (400)
T ss_dssp HHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSC
T ss_pred HHHHHHHHHhcCCcceeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcC
Confidence 5778889999999999999999999775 564 5677888999754 3444 3556666632 6656677
Q ss_pred cCC------------C-chhHHHHHHhcCC--CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCcccccc
Q psy16520 68 TSS------------G-EEGSHVGSAAALD--PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGS 132 (353)
Q Consensus 68 ~~~------------G-~Ea~~vg~~~al~--~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~ 132 (353)
.+. | +-++++|++.+.+ ..|.++-.+-|.|.+ .-| ++.+.+.-. .-+++|++|++
T Consensus 150 ~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~-~~G-----~~~Eal~~A----~~~~lpvi~vv 219 (400)
T 2bfd_A 150 YGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAA-SEG-----DAHAGFNFA----ATLECPIIFFC 219 (400)
T ss_dssp CCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGG-GSH-----HHHHHHHHH----HHTTCCEEEEE
T ss_pred CcccccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhh-hcC-----hHHHHHHHH----HHHCcCEEEEE
Confidence 431 2 2344455554433 112222222233321 122 122222100 11568999999
Q ss_pred CCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCcccc
Q psy16520 133 RQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVF 206 (353)
Q Consensus 133 ~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~ 206 (353)
.||.|++++++..+.+. .++.+||++ .+||+|+..++..-..+. +.++.+.+|.+
T Consensus 220 -~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~----------------~~ar~~~~P~l-- 280 (400)
T 2bfd_A 220 -RNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEAR----------------RRAVAENQPFL-- 280 (400)
T ss_dssp -EECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHH----------------HHHHHHTCCEE--
T ss_pred -ECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHH----------------HHHHhCCCCEE--
Confidence 89999999988776642 467888887 678888766665544443 24456789999
Q ss_pred cccccccccccCCCccChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 207 QPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 207 ~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
|++.|||++.|+.+|....||+.++...|. ++ +|+.+++++|++.|+|++.+...+.
T Consensus 281 --Ie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~-~~~dPl~~~~~~L~~~g~~~~~~~~~i~ 338 (400)
T 2bfd_A 281 --IEAMTYRIGHASTSDDSSAFRSVDEVNYWD-KQDHPISRLRHYLLSQGWWDEEQEKAWR 338 (400)
T ss_dssp --EEEECCCCC--CC--------------------CCHHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred --EEEEeeeeCCCCCCCCCccCCCHHHHHHHH-hcCCHHHHHHHHHHHCCCCChHHHHHHH
Confidence 999999999999998768999999999996 55 8999999999999999999888775
No 12
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.80 E-value=5.5e-24 Score=210.02 Aligned_cols=232 Identities=21% Similarity=0.228 Sum_probs=163.0
Q ss_pred cccCCccchhccccccccCCCCCCccCC----CCC-HHHHHHHHHHHH--HHHhH--HHHHHHHHH------cCCccccc
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLS----NVD-NETNIRMYKTMV--TLNEM--DKVMYESQR------QGRISFYM 67 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~----~l~-~d~l~~~yr~m~--~~R~~--d~~~~~l~~------~Gk~g~~h 67 (353)
+|+++..+|+||+|+||+++.||||+++ +|. .|.++..||.+. +++.+ .+.|.+++. +|+.+.+|
T Consensus 89 fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h 168 (407)
T 1qs0_A 89 FDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIM 168 (407)
T ss_dssp HHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTC
T ss_pred HHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceee
Confidence 5788899999999999999999999875 453 577788888864 44554 466777762 46666766
Q ss_pred cCC---------C----chhHHHHHHhcCC--CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCcccccc
Q psy16520 68 TSS---------G----EEGSHVGSAAALD--PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGS 132 (353)
Q Consensus 68 ~~~---------G----~Ea~~vg~~~al~--~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~ 132 (353)
.+. | +-++++|++.+.+ ..|.++-.+-|.|. +..| .+.|.+.-. .-+++|++|++
T Consensus 169 ~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa-~~~G-----~~~Eal~~A----~~~~lpvi~Vv 238 (407)
T 1qs0_A 169 YSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGA-TAES-----DFHTALTFA----HVYRAPVILNV 238 (407)
T ss_dssp CCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGG-GGSH-----HHHHHHHHH----HHHTCCEEEEE
T ss_pred cchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCch-hhcC-----hHHHHHHHH----HHHCcCEEEEE
Confidence 432 1 2334445554432 22222222333332 1111 121211100 11679999999
Q ss_pred CCCCccccccccccch-hh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCccc
Q psy16520 133 RQHHFVTISSPLATQL-PQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWV 205 (353)
Q Consensus 133 ~e~n~~~~ss~vg~q~-~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~ 205 (353)
+||.|++++++..+. .. .++.+||++ .+||+|+..++..-..+. +..+.+++|.+
T Consensus 239 -~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~----------------~~ar~~~gP~l- 300 (407)
T 1qs0_A 239 -VNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA----------------ERARRGLGPSL- 300 (407)
T ss_dssp -EECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHH----------------HHHHTTSCCEE-
T ss_pred -ECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHH----------------HHHHhcCCCEE-
Confidence 899999999887664 21 367888887 678888766665544443 24566789999
Q ss_pred ccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 206 FQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 206 ~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
|++.|||..+|+.+|....||+.++...|. ++||+.+|+++|+++|+|++++...+.
T Consensus 301 ---Ie~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~ 357 (407)
T 1qs0_A 301 ---IEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATT 357 (407)
T ss_dssp ---EEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred ---EEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 999999999999997558999999999985 679999999999999999999999885
No 13
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.71 E-value=7.8e-21 Score=185.55 Aligned_cols=258 Identities=19% Similarity=0.262 Sum_probs=171.3
Q ss_pred cccCCccchhccccccccCCCCCCccCC----CCC-H-HHHHHHHHHHHH--HHhH--HHHHHHHHH------cCCcccc
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLS----NVD-N-ETNIRMYKTMVT--LNEM--DKVMYESQR------QGRISFY 66 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~----~l~-~-d~l~~~yr~m~~--~R~~--d~~~~~l~~------~Gk~g~~ 66 (353)
+|.++..+|++|++|+++++.|||+..+ .++ . |.++..||.+.+ .+++ .+.+.++.. .|+.+.+
T Consensus 51 ~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~ 130 (367)
T 1umd_A 51 LDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPE 130 (367)
T ss_dssp HHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSS
T ss_pred HHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3556778899999999999999998765 443 3 777777887543 3444 466777764 4554555
Q ss_pred ccC------------CC-chhHHHHHHhcC---CCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCcccc
Q psy16520 67 MTS------------SG-EEGSHVGSAAAL---DPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHY 130 (353)
Q Consensus 67 h~~------------~G-~Ea~~vg~~~al---~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~ 130 (353)
|++ .| +-+.++|++.+. +++..+++ .-|.|.+ ..| .+.|.+.-. .-+++|++|
T Consensus 131 h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~-i~GDGa~-~~G-----~~~Eal~~A----~~~~lpvi~ 199 (367)
T 1umd_A 131 HPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVC-TFGDGAT-SEG-----DWYAGINFA----AVQGAPAVF 199 (367)
T ss_dssp CCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEE-EEETGGG-GSH-----HHHHHHHHH----HHTTCSEEE
T ss_pred CCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEE-EEccccc-ccC-----cHHHHHHHH----HHhCcCEEE
Confidence 642 12 344555555443 23333332 2333321 222 122211100 126799999
Q ss_pred ccCCCCccccccccccchh----hhhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCcc
Q psy16520 131 GSRQHHFVTISSPLATQLP----QAVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAW 204 (353)
Q Consensus 131 ~~~e~n~~~~ss~vg~q~~----~a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~ 204 (353)
++ .||.|++++++..+.+ ..++.+||++ .+|++++..|+..-..+. +..+..++|.+
T Consensus 200 vv-~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~----------------~~a~~~~gP~l 262 (367)
T 1umd_A 200 IA-ENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV----------------ERARRGEGPSL 262 (367)
T ss_dssp EE-EECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHH----------------HHHHTTCCCEE
T ss_pred EE-ecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH----------------HHHHhcCCCEE
Confidence 99 7888999998765543 2467778776 577777766665544443 24456789999
Q ss_pred cccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHH
Q psy16520 205 VFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQ 284 (353)
Q Consensus 205 ~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~ 284 (353)
|++.|||..+|+..|....||+.+|...|. +++|+.+|+++|+++|+|++++...+..- + +++++
T Consensus 263 ----Ie~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~--------~--~~~v~ 327 (367)
T 1umd_A 263 ----VELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREE--------I--RAELE 327 (367)
T ss_dssp ----EEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHH--------H--HHHHH
T ss_pred ----EEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHH--------H--HHHHH
Confidence 999999999999997668999999999885 57999999999999999999999888521 1 12222
Q ss_pred H----HHh--cCChHHHHHHHHhhc
Q psy16520 285 E----YEI--NNNPILRFKTLLFKK 303 (353)
Q Consensus 285 ~----~~~--~ddP~~~~~~~l~~~ 303 (353)
+ ... .++|...|.++|.+.
T Consensus 328 ~a~~~a~~~~~p~~~~~~~~vy~~~ 352 (367)
T 1umd_A 328 RGLKEAEEAGPVPPEWMFEDVFAEK 352 (367)
T ss_dssp HHHHHHHHTCBCCGGGGGTTSSSSC
T ss_pred HHHHHHHhCCCCCHHHHHhhhcCCC
Confidence 2 111 135888888888753
No 14
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.37 E-value=7.1e-15 Score=160.33 Aligned_cols=230 Identities=9% Similarity=0.011 Sum_probs=153.6
Q ss_pred cccCCccchhccccccccCCCCCCccCCC----------CC-HHHHHH-HHHHHH--HH--Hh--HHHHHHHHHH-----
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLSN----------VD-NETNIR-MYKTMV--TL--NE--MDKVMYESQR----- 59 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~~----------l~-~d~l~~-~yr~m~--~~--R~--~d~~~~~l~~----- 59 (353)
+|+.+..+|++|++.. ..|||+..+. +. .|.++. .||++. ++ ++ ..+.|.+++.
T Consensus 378 fE~~l~~~~~~~k~~g---~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~ 454 (1113)
T 2xt6_A 378 FETFLQTKYVGQKRFS---LEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPS 454 (1113)
T ss_dssp HHHHHHHHCSSCGGGC---CTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------
T ss_pred HHHHHHHHHhcCCccc---CCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCC
Confidence 5777788898887622 3999997652 22 344555 599874 34 33 3344544431
Q ss_pred --cCCc-cccccCC--------C-----------------chhHHHHHHhcCCC------------CCeeEecCcchHHH
Q psy16520 60 --QGRI-SFYMTSS--------G-----------------EEGSHVGSAAALDP------------EDLVYAQYRETGVL 99 (353)
Q Consensus 60 --~Gk~-g~~h~~~--------G-----------------~Ea~~vg~~~al~~------------~D~v~~~yR~~g~~ 99 (353)
.|.. ..+|++. | +-++++|++.+.+. .+.+.-.+-|.|..
T Consensus 455 ~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~ 534 (1113)
T 2xt6_A 455 QAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAF 534 (1113)
T ss_dssp ------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHH
T ss_pred ccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCccc
Confidence 1211 1456431 1 24556676666431 34555455555543
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCc---cccccCCCCccccccccccc----hhhhhhhhccee--eecCCcEEEEE
Q psy16520 100 MWRGFSVEQMIDQLYGNIGSSDKGKQMP---VHYGSRQHHFVTISSPLATQ----LPQAVGSAYAYK--LKKNEKVVIVY 170 (353)
Q Consensus 100 la~G~~~~~~~~~~~g~~~g~s~G~~~p---~h~~~~e~n~~~~ss~vg~q----~~~a~G~A~g~~--~~~g~~v~~v~ 170 (353)
..-| .+-|.+. .+.-+++| ++|+| +||.|+++++...+ ....++.+||++ .+||+|+..|+
T Consensus 535 ~~eG-----~~~Ealn----~A~~~~lp~g~vi~iv-~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~ 604 (1113)
T 2xt6_A 535 AGQG-----VVAETLN----LALLRGYRTGGTIHIV-VNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACA 604 (1113)
T ss_dssp HHCT-----HHHHHHT----TTTCTTTCCSCCEEEE-EECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHH
T ss_pred cccc-----HHHHHHH----HHhhcCCCCCCeEEEE-EeCCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHH
Confidence 3445 4566555 23357787 99999 89999999975422 222477888887 78999998888
Q ss_pred eecchhhhhhcccccccccccccccCcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHH
Q psy16520 171 FGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTL 250 (353)
Q Consensus 171 ~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~ 250 (353)
..-..+. +..+.+++|.+ |++.|||..+|+.+|+...| ...+-.+|.+.++|+.+|+++
T Consensus 605 ~a~~~A~----------------~~~r~~~~Pvl----Ie~~tyR~~GHs~~D~p~~~-~~~~~~~~~~~~dpi~~~~~~ 663 (1113)
T 2xt6_A 605 WVARLAV----------------DFRQAFKKDVV----IDMLCYRRRGHNEGDDPSMT-QPYMYDVIDTKRGSRKAYTEA 663 (1113)
T ss_dssp HHHHHHH----------------HHHHHHCCCEE----EEEECCCCSCSSTTCCGGGT-CHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHH----------------HHHHhcCCCEE----EEEEeEccCCcCCCCccccC-ChHHHHHHHhcCCHHHHHHHH
Confidence 8766664 35567889999 99999999999999876544 455556675344999999999
Q ss_pred HhhccCCCHHHHHHhh
Q psy16520 251 LFKKKLWSEEQDEQIG 266 (353)
Q Consensus 251 l~~~~~~~e~~~~R~~ 266 (353)
|+++|+|++++...+.
T Consensus 664 L~~~G~~t~ee~~~i~ 679 (1113)
T 2xt6_A 664 LIGRGDISMKEAEDAL 679 (1113)
T ss_dssp HHHHTSSCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHH
Confidence 9999999999998885
No 15
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.37 E-value=4.5e-15 Score=158.27 Aligned_cols=230 Identities=9% Similarity=0.015 Sum_probs=152.8
Q ss_pred cccCCccchhccccccccCCCCCCccCCC----------CC-HHHHHH-HHHHHH--HH--Hh--HHHHHHHHHH-----
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLSN----------VD-NETNIR-MYKTMV--TL--NE--MDKVMYESQR----- 59 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~~----------l~-~d~l~~-~yr~m~--~~--R~--~d~~~~~l~~----- 59 (353)
+|+.+..+|++|++. +..|||+..+. +. .|.++. .||++. ++ ++ ..+.|.+++.
T Consensus 133 fE~~l~~~~~~~k~~---g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~ 209 (868)
T 2yic_A 133 FETFLQTKYVGQKRF---SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPS 209 (868)
T ss_dssp HHHHHHHHCSSCGGG---CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------
T ss_pred HHHHHHHHHhcCCcc---cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCC
Confidence 567778888887752 34999997652 21 344555 599874 34 44 3344444431
Q ss_pred --cCCc-cccccCC--------C-----------------chhHHHHHHhcCCC------------CCeeEecCcchHHH
Q psy16520 60 --QGRI-SFYMTSS--------G-----------------EEGSHVGSAAALDP------------EDLVYAQYRETGVL 99 (353)
Q Consensus 60 --~Gk~-g~~h~~~--------G-----------------~Ea~~vg~~~al~~------------~D~v~~~yR~~g~~ 99 (353)
.|.. ..+|++. | +-++++|++.+.+. .+.+.-.+-|.|..
T Consensus 210 ~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~ 289 (868)
T 2yic_A 210 QAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAF 289 (868)
T ss_dssp ------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHH
T ss_pred ccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCccc
Confidence 1211 2456431 2 23556677666431 34444444455442
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCc---cccccCCCCccccccccccc----hhhhhhhhccee--eecCCcEEEEE
Q psy16520 100 MWRGFSVEQMIDQLYGNIGSSDKGKQMP---VHYGSRQHHFVTISSPLATQ----LPQAVGSAYAYK--LKKNEKVVIVY 170 (353)
Q Consensus 100 la~G~~~~~~~~~~~g~~~g~s~G~~~p---~h~~~~e~n~~~~ss~vg~q----~~~a~G~A~g~~--~~~g~~v~~v~ 170 (353)
..-| .+-|.+. .+.-+++| ++|+| +||.|+++++...+ ....++.+||++ .+||+|+..|+
T Consensus 290 ~~eG-----~v~Ealn----~A~~~~lp~g~vi~iv-~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~ 359 (868)
T 2yic_A 290 AGQG-----VVAETLN----LALLRGYRTGGTIHIV-VNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACA 359 (868)
T ss_dssp HHCH-----HHHHHHT----TTTCTTTCCSCCEEEE-EECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHH
T ss_pred cccc-----HHHHHHH----HHHhcCCCCCCeEEEE-EcCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHH
Confidence 2333 4666555 23457787 99999 89999999975422 223478888887 78999998888
Q ss_pred eecchhhhhhcccccccccccccccCcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHH
Q psy16520 171 FGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTL 250 (353)
Q Consensus 171 ~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~ 250 (353)
..-..+. +..+.+++|.+ |++.|||..+|+.+|+.. |+...+-..|.++++|+.+|+++
T Consensus 360 ~a~~~A~----------------~~ar~~~~Pvl----Ie~~tyR~~GHs~~D~p~-~~~p~~~~~~~~~~dPi~~~~~~ 418 (868)
T 2yic_A 360 WVARLAV----------------DFRQAFKKDVV----IDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEA 418 (868)
T ss_dssp HHHHHHH----------------HHHHHHCCCEE----EEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHH----------------HHHHhCCCCEE----EEEEeecCCCcCcccccc-cCChHHHHHHHhCCCHHHHHHHH
Confidence 8766664 35567889999 999999999999998754 55555666775344999999999
Q ss_pred HhhccCCCHHHHHHhh
Q psy16520 251 LFKKKLWSEEQDEQIG 266 (353)
Q Consensus 251 l~~~~~~~e~~~~R~~ 266 (353)
|+++|+|++++...+.
T Consensus 419 L~~~G~~t~ee~~~i~ 434 (868)
T 2yic_A 419 LIGRGDISMKEAEDAL 434 (868)
T ss_dssp HHHTTSSCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHH
Confidence 9999999999998875
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.19 E-value=3.1e-13 Score=144.94 Aligned_cols=229 Identities=11% Similarity=0.080 Sum_probs=134.5
Q ss_pred cccCCccchhccccccccCCCCCCccCC----------CC-CHHHHHH-HHHHHHH--H--Hh--HHHHHHHHHHc--C-
Q psy16520 3 IENASGPCFKKERLGRYSGSNGQSSHLS----------NV-DNETNIR-MYKTMVT--L--NE--MDKVMYESQRQ--G- 61 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~~~~~~~Gqea~~~----------~l-~~d~l~~-~yr~m~~--~--R~--~d~~~~~l~~~--G- 61 (353)
+|+++..+|++|+. .+..|||+..+ ++ ..|.++. .||.+.. + ++ ..+.|.+++.+ |
T Consensus 213 fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~ 289 (933)
T 2jgd_A 213 LERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEH 289 (933)
T ss_dssp HHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--C
T ss_pred HHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCC
Confidence 57788889998872 23689998654 22 1344554 6999753 4 44 45677777622 1
Q ss_pred ---CccccccC----------------------CC-chhHHHHHHhcCCC-------CCeeEecCcchHHHHHcCCCHHH
Q psy16520 62 ---RISFYMTS----------------------SG-EEGSHVGSAAALDP-------EDLVYAQYRETGVLMWRGFSVEQ 108 (353)
Q Consensus 62 ---k~g~~h~~----------------------~G-~Ea~~vg~~~al~~-------~D~v~~~yR~~g~~la~G~~~~~ 108 (353)
+...+|++ .| +-++++|++.|.+. .+.++-.+-|.|..-.-|
T Consensus 290 ~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG----- 364 (933)
T 2jgd_A 290 LGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQG----- 364 (933)
T ss_dssp CSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCT-----
T ss_pred CCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCC-----
Confidence 11133432 11 24455666655331 233443444555432444
Q ss_pred HHHHhhcCCCCCCCCCCCc---cccccCCCCcccccc-ccccchh----hhhhhhccee--eecCCcEEEEEeecchhhh
Q psy16520 109 MIDQLYGNIGSSDKGKQMP---VHYGSRQHHFVTISS-PLATQLP----QAVGSAYAYK--LKKNEKVVIVYFGEGAAIV 178 (353)
Q Consensus 109 ~~~~~~g~~~g~s~G~~~p---~h~~~~e~n~~~~ss-~vg~q~~----~a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a 178 (353)
++-|.+.- +.-+++| +++++ .||.|++++ +++.+.. ..++.+++++ .+||+|+..|+.....+.
T Consensus 365 ~~~Ealn~----A~~~~lp~gg~I~vv-~nN~~~ist~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~- 438 (933)
T 2jgd_A 365 VVQETLNM----SKARGYEVGGTVRIV-INNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLAL- 438 (933)
T ss_dssp HHHHHHHH----TTSTTTCCSCCEEEE-EECC---------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHH-
T ss_pred HHHHHHHH----hhccCCCCCceEEEE-EeCCccccCCCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH-
Confidence 35554442 2347788 89999 799999999 8885543 2367778876 679999877777665554
Q ss_pred hhcccccccccccccccCcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCC
Q psy16520 179 TMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLW 257 (353)
Q Consensus 179 ~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~ 257 (353)
+..+...+|.+ |++.|||..+|+..|. ..|+..++...|. +. +|+.+++++|+++|+|
T Consensus 439 ---------------e~~r~~~~P~l----Ie~~tyR~~GH~~~D~-~~yr~~~e~~~~~-~~~dPi~~~~~~Li~~Gv~ 497 (933)
T 2jgd_A 439 ---------------DFRNTFKRDVF----IDLVCYRRHGHNEADE-PSATQPLMYQKIK-KHPTPRKIYADKLEQEKVA 497 (933)
T ss_dssp ---------------HHHHHHCCCEE----EEEECCCCC------------CCTTHHHHH-TSCCHHHHHHHHHHTTTSS
T ss_pred ---------------HHHHhcCCCEE----EEEeeeeecCcCcccc-hhhCCHHHHHHHH-ccCCHHHHHHHHHHHcCCC
Confidence 34556789999 9999999999999987 4699998888885 65 9999999999999999
Q ss_pred CHHHHHHhh
Q psy16520 258 SEEQDEQIG 266 (353)
Q Consensus 258 ~e~~~~R~~ 266 (353)
++.+...+.
T Consensus 498 t~~~~~~i~ 506 (933)
T 2jgd_A 498 TLEDATEMV 506 (933)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999877664
No 17
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=98.60 E-value=8.9e-09 Score=106.72 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCC-CCCeeE--ecCcchHHHHHcCCCH
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALD-PEDLVY--AQYRETGVLMWRGFSV 106 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~-~~D~v~--~~yR~~g~~la~G~~~ 106 (353)
..++.+++..+++.| |.+...+.. + ..|.++++.|++.+.+++..++. +.|+++ ..||++++.+..|. .
T Consensus 21 ~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~-~ 92 (621)
T 2o1s_A 21 RLLPKESLPKLCDEL---RRYLLDSVS--R--SSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGR-R 92 (621)
T ss_dssp TTSCGGGHHHHHHHH---HHHHHHHSC--G--GGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTT-G
T ss_pred hhCCHHHHHHHHHHH---HHHHHHHHh--h--cCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCC-H
Confidence 367888899998888 554433322 2 24788899999999999988999 899998 68999999998885 1
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 107 EQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 107 ~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
++ +.. +-..++. .|.--|.+ + +.+.++ ++++|.++|.|+|.|+|.++.+.+..++|++|||+..
T Consensus 93 ~~-~~~-~r~~~g~-~g~~~~~~--s-~~~~~~-~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~ 156 (621)
T 2o1s_A 93 DK-IGT-IRQKGGL-HPFPWRGE--S-EYDVLS-VGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAIT 156 (621)
T ss_dssp GG-GGG-TTSTTSC-CSSCCTTT--C-TTCCSC-CSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGG
T ss_pred hh-hhc-ccccCCC-CCCCCCCC--C-CCCccC-CcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhh
Confidence 11 111 2111221 12111111 1 234444 8899999999999999998878889999999999998
No 18
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=98.32 E-value=1.4e-07 Score=97.79 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCC-CCCeeEecCcchH---HHHHcCC-
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALD-PEDLVYAQYRETG---VLMWRGF- 104 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~-~~D~v~~~yR~~g---~~la~G~- 104 (353)
..++.+++..+|+.| |.+.. +...+ ..|.+|++.|+-.+.+++-..+. +.|+++.. |||+ +.+..|.
T Consensus 23 ~~l~~~~l~~l~~~i---R~~~~---~~~~~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~G~~ 94 (629)
T 2o1x_A 23 KRLSREQLPALTEEL---RGEIV---RVCSR-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILTGRR 94 (629)
T ss_dssp TTSCGGGHHHHHHHH---HHHHH---HHHTT-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTTTTG
T ss_pred hhCCHHHHHHHHHHH---HHHHH---HHHHh-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHhCcH
Confidence 367888999999988 54332 22223 35788888888554444444457 78999988 9986 5556664
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 105 SVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 105 ~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+....+.++.|. +|..++.. +. +....++++|.++|.|+|.|+|.++.+.+..++|++|||+..
T Consensus 95 ~~~~~~r~~~g~-~G~p~~~~-s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~ 158 (629)
T 2o1x_A 95 DQMADIKKEGGI-SGFTKVSE-SE-------HDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLT 158 (629)
T ss_dssp GGGGGTTSTTSC-CSSCCGGG-CT-------TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGG
T ss_pred hHHhCcccCCCC-CCCCCCCC-CC-------CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhh
Confidence 222223444442 23333322 11 234567899999999999999988778889999999999998
No 19
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.22 E-value=3.1e-07 Score=96.10 Aligned_cols=141 Identities=14% Similarity=0.093 Sum_probs=96.3
Q ss_pred CccccccCCCCccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh------
Q psy16520 126 MPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT------ 179 (353)
Q Consensus 126 ~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~------ 179 (353)
+|.|......+....++++|.++|.|+|.|++.++.+ .+..++|++|||+.. |+
T Consensus 100 ~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~ 179 (680)
T 1gpu_A 100 TPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGN 179 (680)
T ss_dssp CCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTT
T ss_pred CCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCc
Confidence 3445443345778889999999999999999987443 267899999999998 11
Q ss_pred -hccccccccccccc-----ccCcccCCCcccccccccccccccCCCc-c-----ChhHhhcCHHHHHHHHHcCCCeehh
Q psy16520 180 -MATPFQPQRRNSME-----EMGSRPEGLAWVFQPLELTETTIGHHST-S-----DDSTAYRSKSEVQEYEINNNPILRF 247 (353)
Q Consensus 180 -is~~~~~q~~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~-~-----D~~~~yr~~~ea~~~~r~~~Pv~~~ 247 (353)
|.+..+|.+..... ......+..+| |.++. . |+.+++.+.+++.+ ..++|+++
T Consensus 180 li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~~d~~~l~~al~~A~~--~~~~P~lI- 244 (680)
T 1gpu_A 180 LIAIYDDNKITIDGATSISFDEDVAKRYEAY------------GWEVLYVENGNEDLAGIAKAIAQAKL--SKDKPTLI- 244 (680)
T ss_dssp EEEEEEECSEETTEEGGGTCCCCHHHHHHHH------------TCEEEEESCTTTCHHHHHHHHHHHHH--CTTSCEEE-
T ss_pred EEEEEECCCceEecccccccCccHHHHHHhc------------CCeEEEEecCCCCHHHHHHHHHHHHH--CCCCCEEE-
Confidence 44444555443110 01112222233 66554 2 67677777766653 13499999
Q ss_pred HHHHhhccCCCHHHHHHhhccCCCCCc---cccCCHHHHHHHHhcCChH
Q psy16520 248 KTLLFKKKLWSEEQDEQIGHHSTSDDS---TAYRSKSEVQEYEINNNPI 293 (353)
Q Consensus 248 ~~~l~~~~~~~e~~~~R~~~Hs~~Dd~---~~yr~~~e~~~~~~~ddP~ 293 (353)
++.|++-.||+..|+. ..||+++|+++|.+.. ++
T Consensus 245 -----------~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~~~-~~ 281 (680)
T 1gpu_A 245 -----------KMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKSKF-GF 281 (680)
T ss_dssp -----------EEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHHHT-TC
T ss_pred -----------EEEeecccccccCCCCccCCCCCCHHHHHHHHHHc-CC
Confidence 9999999999977754 6799999999998774 44
No 20
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=98.20 E-value=2.3e-07 Score=95.74 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=84.3
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh--------hh------hccccccc-ccccc-------------
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI--------VT------MATPFQPQ-RRNSM------------- 192 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~--------a~------is~~~~~q-~~~~~------------- 192 (353)
.+.+|..+|.|.|.+++. .+..++|+.|||++. |+ +.+..||. +....
T Consensus 419 ~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~ 494 (603)
T 4feg_A 419 FATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIG 494 (603)
T ss_dssp SCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCS
T ss_pred cccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCccc
Confidence 345666666677776664 356899999999988 21 33333432 33100
Q ss_pred ---cccCcccCCCcccccccccccccccCCCcc--ChhHhhcCHHHHHHHHH--cC-CCeehhHHHHhhccCCCHHHH--
Q psy16520 193 ---EEMGSRPEGLAWVFQPLELTETTIGHHSTS--DDSTAYRSKSEVQEYEI--NN-NPILRFKTLLFKKKLWSEEQD-- 262 (353)
Q Consensus 193 ---~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~--D~~~~yr~~~ea~~~~r--~~-~Pv~~~~~~l~~~~~~~e~~~-- 262 (353)
.....+..+.+| |+++.+ ++. ..+++.+.++ +. +|+++ |+.+
T Consensus 495 ~~~~~~d~~~~a~a~------------G~~~~~v~~~~----~l~~al~~a~~~~~~gP~lI------------ev~~~~ 546 (603)
T 4feg_A 495 VEFNDIDFSKIADGV------------HMQAFRVNKIE----QLPDVFEQAKAIAQHEPVLI------------DAVITG 546 (603)
T ss_dssp SBCCCCCHHHHHHHT------------TCEEEEECBGG----GHHHHHHHHHHHTTTSCEEE------------EEECCC
T ss_pred CcCCCCCHHHHHHHC------------CCeEEEECCHH----HHHHHHHHHHHhcCCCcEEE------------EEEeCC
Confidence 000011111122 665554 433 3345555555 55 99999 9999
Q ss_pred -HHhhccCCCCCccccCCHH--HHHHHHhcCChHHHHHHHHhhcCCCCHHHH
Q psy16520 263 -EQIGHHSTSDDSTAYRSKS--EVQEYEINNNPILRFKTLLFKKKLWSEKQD 311 (353)
Q Consensus 263 -~R~~~Hs~~Dd~~~yr~~~--e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~ 311 (353)
+|+.+|.+.|++..||..+ +..++.++| |+..|+++|.++|+|++++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 547 DRPLPAEKLRLDSAMSSAADIEAFKQRYEAQ-DLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp CCCCCTTSCCCCTTTSCHHHHHHHHHHHTCT-TCCCHHHHHHHTTC------
T ss_pred CCCCCcccchhhhhhhhHHHHHHHHhhCCcc-cCCchHHHHHHcCCchhhhh
Confidence 6677899999988888665 566666775 99999999999999998654
No 21
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=97.97 E-value=3.5e-07 Score=95.21 Aligned_cols=131 Identities=14% Similarity=0.035 Sum_probs=90.3
Q ss_pred CCccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh-------hccccccc
Q psy16520 135 HHFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT-------MATPFQPQ 187 (353)
Q Consensus 135 ~n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~-------is~~~~~q 187 (353)
.+....++++|.++|.|+|.|++.++.+ .+..++|++|||+.. |+ |.+..+|.
T Consensus 111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 190 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR 190 (651)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 3567788999999999999999987433 467899999999998 11 44444554
Q ss_pred cccccc-----ccCcccCCCcccccccccccccccCCCc-c----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCC
Q psy16520 188 RRNSME-----EMGSRPEGLAWVFQPLELTETTIGHHST-S----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLW 257 (353)
Q Consensus 188 ~~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~-~----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~ 257 (353)
+..... ......+..+| |.++. . |+.+++.+.+++.+ .++|+++
T Consensus 191 ~~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~d~~~l~~al~~a~~---~~~P~lI----------- 244 (651)
T 2e6k_A 191 ISIDGPTDLAFTEDVLARYRAY------------GWQTLRVEDVNDLEALRKAIKLAKL---DERPTLI----------- 244 (651)
T ss_dssp EETTEEGGGTCCSCHHHHHHHT------------TCEEEEESCTTCHHHHHHHHHHHHH---SSSCEEE-----------
T ss_pred cccccccccccCccHHHHHHhC------------CCeEEEEeCCCCHHHHHHHHHHHHH---CCCCEEE-----------
Confidence 443110 01122222333 66665 2 78788877776643 3599999
Q ss_pred CHHHHHHhhccCCCCCcccc----CCHHHHHHHHhcCChHH
Q psy16520 258 SEEQDEQIGHHSTSDDSTAY----RSKSEVQEYEINNNPIL 294 (353)
Q Consensus 258 ~e~~~~R~~~Hs~~Dd~~~y----r~~~e~~~~~~~ddP~~ 294 (353)
++.|++-.||+.. ++..| ++++|+++|.+++ |++
T Consensus 245 -~~~t~kg~G~~~~-~~~~~H~~~~~~~e~~~~~~~~-~~~ 282 (651)
T 2e6k_A 245 -AVRSHIGFGSPKQ-DSAKAHGEPLGPEAVEATRRNL-GWP 282 (651)
T ss_dssp -EEECCTTTTSTTT-TSGGGTSSCCHHHHHHHHHHHH-TCC
T ss_pred -EEEeEeccccccc-ccccccccCCCHHHHHHHHHHc-CCC
Confidence 9999999999944 44555 5789999998874 664
No 22
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=97.81 E-value=9.4e-06 Score=84.75 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=87.1
Q ss_pred Cccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
+....++++|.++|.|+|.|++.++.+ .+..++|+.|||+.. |+ |.+..+|.+
T Consensus 110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~ 189 (673)
T 1r9j_A 110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 189 (673)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence 556678899999999999999987433 467899999999998 11 444445544
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCc------cChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCC
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHST------SDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLW 257 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~------~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~ 257 (353)
...+. ...+..+..+| |.++. .|+.+++.+.+++.+ ..++|+++
T Consensus 190 ~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~~d~~~l~~Al~~A~~--~~~~P~lI----------- 244 (673)
T 1r9j_A 190 SIDGSTSLSFTEQCHQKYVAM------------GFHVIEVKNGDTDYEGLRKALAEAKA--TKGKPKMI----------- 244 (673)
T ss_dssp CSSSBGGGTCCCCHHHHHHHT------------TCEEEEESCTTTCHHHHHHHHHHHHH--CCSSCEEE-----------
T ss_pred ccccchhhccCHhHHHHHHHC------------CCeEEEEeCCCCCHHHHHHHHHHHHH--cCCCCEEE-----------
Confidence 32110 01222233333 66655 577788877766643 13499999
Q ss_pred CHHHHHHhhccCCCCC---ccccCCHHHHHHHHhc
Q psy16520 258 SEEQDEQIGHHSTSDD---STAYRSKSEVQEYEIN 289 (353)
Q Consensus 258 ~e~~~~R~~~Hs~~Dd---~~~yr~~~e~~~~~~~ 289 (353)
++.|.+-.||+..|. +..+++++|++.+.+.
T Consensus 245 -~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~~ 278 (673)
T 1r9j_A 245 -VQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKAK 278 (673)
T ss_dssp -EEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHHH
T ss_pred -EEecccccccccCCCcccccCCCCHHHHHHHHHh
Confidence 999999999985443 2346888999888765
No 23
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=97.61 E-value=6.5e-06 Score=85.94 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=89.2
Q ss_pred CCccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh-------hccccccc
Q psy16520 135 HHFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT-------MATPFQPQ 187 (353)
Q Consensus 135 ~n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~-------is~~~~~q 187 (353)
.+....++++|.++|.|+|.|++.++.+ .+..++|++|||+.. |+ |.+..+|.
T Consensus 107 ~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 186 (669)
T 2r8o_A 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (669)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 3677788999999999999999987432 267899999999998 11 44444554
Q ss_pred cccccc-----ccCcccCCCcccccccccccccccCCCc-c----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCC
Q psy16520 188 RRNSME-----EMGSRPEGLAWVFQPLELTETTIGHHST-S----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLW 257 (353)
Q Consensus 188 ~~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~-~----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~ 257 (353)
+..... ......+..+| |.++. . |+.+++.+.+++.+ ..++|+++
T Consensus 187 ~~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI----------- 241 (669)
T 2r8o_A 187 ISIDGHVEGWFTDDTAMRFEAY------------GWHVIRDIDGHDAASIKRAVEEARA--VTDKPSLL----------- 241 (669)
T ss_dssp EETTEEGGGTCCCCHHHHHHHT------------TCEEEEEEETTCHHHHHHHHHHHHH--CCSSCEEE-----------
T ss_pred cEeccccccccCccHHHHHHHC------------CCeEEeEECCCCHHHHHHHHHHHHh--cCCCCEEE-----------
Confidence 443110 01112222233 66665 2 78788877776654 13499999
Q ss_pred CHHHHHHhhccCC-CCCc---cccCCHHHHHHHHhc
Q psy16520 258 SEEQDEQIGHHST-SDDS---TAYRSKSEVQEYEIN 289 (353)
Q Consensus 258 ~e~~~~R~~~Hs~-~Dd~---~~yr~~~e~~~~~~~ 289 (353)
++.|++-.||+. .|+. ..|++++|++.|.+.
T Consensus 242 -~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~~ 276 (669)
T 2r8o_A 242 -MCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ 276 (669)
T ss_dssp -EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHH
T ss_pred -EEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHHH
Confidence 999999999994 4443 569999999988765
No 24
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=97.35 E-value=6.4e-05 Score=78.61 Aligned_cols=126 Identities=16% Similarity=0.104 Sum_probs=80.7
Q ss_pred Cccccccccccchhhhhhhhcceeee-------------cCCcEEEEEeecchhh----------hh-------hccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLK-------------KNEKVVIVYFGEGAAI----------VT-------MATPFQ 185 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~-------------~g~~v~~v~~Gdg~~~----------a~-------is~~~~ 185 (353)
+....++++|.+++.|+|.|++.++. ..+..++|++|||+.. |+ |.+..+
T Consensus 127 gv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~ 206 (700)
T 3rim_A 127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDR 206 (700)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEEC
Confidence 45566789999999999999998853 4568999999999998 11 444444
Q ss_pred cccccccc-----ccCcccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhcc
Q psy16520 186 PQRRNSME-----EMGSRPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKK 255 (353)
Q Consensus 186 ~q~~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~ 255 (353)
|++...+. ......+..+| |.++.. |+.+++.+.++|.+ ..++|+++
T Consensus 207 N~~si~~~~~~~~~~~~~~~~~a~------------G~~~~~V~DG~D~~al~~Al~~A~~--~~~~P~lI--------- 263 (700)
T 3rim_A 207 NQISIEDDTNIALCEDTAARYRAY------------GWHVQEVEGGENVVGIEEAIANAQA--VTDRPSFI--------- 263 (700)
T ss_dssp CSEETTEEGGGTCCCCHHHHHHHH------------TCEEEEEECTTCHHHHHHHHHHHHH--CCSSCEEE---------
T ss_pred CCcccccchhhccchhHHHHHHHc------------CCeEEEECCCCCHHHHHHHHHHHHH--cCCCCEEE---------
Confidence 44433110 01222333333 555432 88888877776643 13499999
Q ss_pred CCCHHHHHHhhccCCCCCcc----ccCCHHHHHHHH
Q psy16520 256 LWSEEQDEQIGHHSTSDDST----AYRSKSEVQEYE 287 (353)
Q Consensus 256 ~~~e~~~~R~~~Hs~~Dd~~----~yr~~~e~~~~~ 287 (353)
++.|++-.||+...+.. .--+.++++.+.
T Consensus 264 ---~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~ 296 (700)
T 3rim_A 264 ---ALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVK 296 (700)
T ss_dssp ---EEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHH
T ss_pred ---EEEEEeeecCCccCCCccccCCCCCHHHHHHHH
Confidence 99999999998642211 123456665543
No 25
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=96.91 E-value=0.00017 Score=75.39 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=82.8
Q ss_pred Cccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
+....++++|.++|.|+|.|++.++.+ .+..++|+.|||+.. |+ |.+..+|.+
T Consensus 121 ~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~ 200 (675)
T 1itz_A 121 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI 200 (675)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 566778899999999999999987443 467899999999998 11 444445544
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCc-c-----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCC
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHST-S-----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLW 257 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~-~-----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~ 257 (353)
..... ......+..+| |.++. . |+.+++.+.+++.+ ..++|+++
T Consensus 201 ~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~~d~~~l~~al~~a~~--~~~~P~lI----------- 255 (675)
T 1itz_A 201 SIDGDTEIAFTEDVSTRFEAL------------GWHTIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLI----------- 255 (675)
T ss_dssp ETTEEGGGTCCSCHHHHHHHT------------TCEEEEESCTTTCHHHHHHHHHHHHH--CCSSCEEE-----------
T ss_pred cCCCChhhhcChhHHHHHHhC------------CCEEEEEecCCCCHHHHHHHHHHHHH--CCCCeEEE-----------
Confidence 32110 01112222233 65554 2 66667766655542 13499999
Q ss_pred CHHHHHHhhccCCCCCcc----ccCCHHHHHHHHhc
Q psy16520 258 SEEQDEQIGHHSTSDDST----AYRSKSEVQEYEIN 289 (353)
Q Consensus 258 ~e~~~~R~~~Hs~~Dd~~----~yr~~~e~~~~~~~ 289 (353)
++.|++-.||+...++. .+.++++++.+.+.
T Consensus 256 -~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~~ 290 (675)
T 1itz_A 256 -KVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQN 290 (675)
T ss_dssp -EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHH
T ss_pred -EEeeecccCcccccCcccccCCCCCHHHHHHHHHH
Confidence 99999999998643322 25677888777654
No 26
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=96.68 E-value=0.00031 Score=73.60 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=67.6
Q ss_pred CccccccccccchhhhhhhhcceeeecC----------CcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKN----------EKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g----------~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
+....++++|.++|.|+|.|++.++.+. +..++|+.|||+.. |+ |.+..+|.+
T Consensus 149 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 228 (711)
T 3uk1_A 149 GVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI 228 (711)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 3445678999999999999999874432 57899999999997 11 444444444
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCC
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLW 257 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~ 257 (353)
..... ......+..+| |.++.. |+.+++.+.+++ ++. +|+++
T Consensus 229 ~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~d~~~l~~Al~~A----~~~~~P~lI----------- 281 (711)
T 3uk1_A 229 SIDGDVVNWFHDDTPKRFEAY------------GWNVIPNVNGHDVDAIDAAIAKA----KRSDKPSLI----------- 281 (711)
T ss_dssp ETTEEGGGTCCCCHHHHHHHT------------TCEEEEEEETTCHHHHHHHHHHH----TTCSSCEEE-----------
T ss_pred ccccchhhhcCCCHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHH----HhCCCCEEE-----------
Confidence 32110 01222333334 666543 666666555444 444 99999
Q ss_pred CHHHHHHhhccCCCCCccccC----CHHHHHHHH
Q psy16520 258 SEEQDEQIGHHSTSDDSTAYR----SKSEVQEYE 287 (353)
Q Consensus 258 ~e~~~~R~~~Hs~~Dd~~~yr----~~~e~~~~~ 287 (353)
++.|++-.||+...++..+- +.+|++...
T Consensus 282 -~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~ 314 (711)
T 3uk1_A 282 -CCKTRIGNGAATKAGGHDVHGAPLGADEIAKTR 314 (711)
T ss_dssp -EEEC--------------------CHHHHHHHH
T ss_pred -EEccccccCCCCCCCcccccCCCCCHHHHHHHH
Confidence 99999999997543333232 455665543
No 27
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=96.62 E-value=0.0007 Score=69.62 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=40.0
Q ss_pred ccCCCccccccccccc---ccccCCCccChhHhhcCHH--HHHHHHHcCCCeehhHHHHhhccCCCHHHHH
Q psy16520 198 RPEGLAWVFQPLELTE---TTIGHHSTSDDSTAYRSKS--EVQEYEINNNPILRFKTLLFKKKLWSEEQDE 263 (353)
Q Consensus 198 a~rgp~~~~~~~~~~~---~r~~~hs~~D~~~~yr~~~--ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~ 263 (353)
...||.+ ||+.| +|...|...|....|+..+ +..++. +.+|+..|+++|.++|+|++.+.-
T Consensus 533 ~~~gP~l----Iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~~ 598 (603)
T 4feg_A 533 AQHEPVL----IDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQI 598 (603)
T ss_dssp TTTSCEE----EEEECCCCCCCCTTSCCCCTTTSCHHHHHHHHHHH-TCTTCCCHHHHHHHTTC-------
T ss_pred cCCCcEE----EEEEeCCCCCCCcccchhhhhhhhHHHHHHHHhhC-CcccCCchHHHHHHcCCchhhhhh
Confidence 6789999 99999 4556666654446665444 444553 459999999999999999988653
No 28
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=96.52 E-value=0.00023 Score=73.56 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=68.1
Q ss_pred ccccccccchhhhhhhhcceeeecC-CcEEEEEeecchhh----------hh-------hcccccccccccccc------
Q psy16520 139 TISSPLATQLPQAVGSAYAYKLKKN-EKVVIVYFGEGAAI----------VT-------MATPFQPQRRNSMEE------ 194 (353)
Q Consensus 139 ~~ss~vg~q~~~a~G~A~g~~~~~g-~~v~~v~~Gdg~~~----------a~-------is~~~~~q~~~~~~~------ 194 (353)
..++++|..+|.|+|.|++.++.+. +..++|+.|||+.. |+ |.+..+|++......
T Consensus 118 ~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~ 197 (616)
T 3mos_A 118 VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQM 197 (616)
T ss_dssp SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCH
T ss_pred ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccCh
Confidence 3577899999999999999875554 57899999999997 11 334444544431100
Q ss_pred cCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCC
Q psy16520 195 MGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHST 270 (353)
Q Consensus 195 ~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~ 270 (353)
.....+..+| |.++.. |+.+++++.+ .+ .++|+++ ++.|++-.||+.
T Consensus 198 ~~~~~~~~a~------------G~~~~~VdG~d~~~l~~al~----~~-~~~P~lI------------~v~T~kg~G~~~ 248 (616)
T 3mos_A 198 DIYQKRCEAF------------GWHAIIVDGHSVEELCKAFG----QA-KHQPTAI------------IAKTFKGRGITG 248 (616)
T ss_dssp HHHHHHHHHT------------TCEEEEEETTCHHHHHHHHH----SC-CSSCEEE------------EEECCTTTTSTT
T ss_pred HHHHHHHHHc------------CCeEEEEcCCCHHHHHHHHH----hc-CCCCEEE------------EEEEeccccccc
Confidence 0011112222 555442 6655655442 22 3499999 999999999987
Q ss_pred CCCcc
Q psy16520 271 SDDST 275 (353)
Q Consensus 271 ~Dd~~ 275 (353)
.+++.
T Consensus 249 ~e~~~ 253 (616)
T 3mos_A 249 VEDKE 253 (616)
T ss_dssp TTTCS
T ss_pred ccCch
Confidence 65443
No 29
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=96.51 E-value=0.00074 Score=70.28 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=77.5
Q ss_pred CccccccccccchhhhhhhhcceeeecC----------CcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKN----------EKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g----------~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
+....++++|.++|.|+|.|++.++.+. +..++|+.|||+.. |+ |.+..+|.+
T Consensus 110 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~ 189 (663)
T 3kom_A 110 GVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI 189 (663)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-
T ss_pred CcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 3445678999999999999999874432 67899999999997 11 344444444
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCc-c----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCC
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHST-S----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWS 258 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~-~----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~ 258 (353)
...+. ......+..+| |.++. . |+.+++.+.+++.+. .++|+++
T Consensus 190 ~i~~~~~~~~~~d~~~~~~a~------------G~~~~~~vdG~d~~~l~~al~~A~~~--~~~P~lI------------ 243 (663)
T 3kom_A 190 SIDGDTKGWFSDNTPERFRAY------------GWHVIENVDGHDFVAIEKAINEAHSQ--QQKPTLI------------ 243 (663)
T ss_dssp ----CGGGTCCCCHHHHHHHT------------TCEEEEEEETTCHHHHHHHHHHHHHC--SSSCEEE------------
T ss_pred ccccchhhhcchhHHHHHHHC------------CCeEEEEEcCCCHHHHHHHHHHHHhc--CCCCEEE------------
Confidence 32110 01222333334 77766 2 676777655544321 2499999
Q ss_pred HHHHHHhhccCCCCCcc----ccCCHHHHHHHH
Q psy16520 259 EEQDEQIGHHSTSDDST----AYRSKSEVQEYE 287 (353)
Q Consensus 259 e~~~~R~~~Hs~~Dd~~----~yr~~~e~~~~~ 287 (353)
++.|++-.||+...+.. ..-+++|++...
T Consensus 244 ~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~~ 276 (663)
T 3kom_A 244 CCKTVIGFGSPEKAGTASVHGSPLSDQERASAA 276 (663)
T ss_dssp EEECCTTTTCTTTTTCSSTTSSCCCHHHHHHHH
T ss_pred EEecccccccCCCCCCccccCCCCCHHHHHHHH
Confidence 99999999998643221 123566766543
No 30
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=96.22 E-value=0.0028 Score=67.92 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.6
Q ss_pred ccccccccccchhhhhhhhcceee-------ecCCcEEEEEeecchhh
Q psy16520 137 FVTISSPLATQLPQAVGSAYAYKL-------KKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 137 ~~~~ss~vg~q~~~a~G~A~g~~~-------~~g~~v~~v~~Gdg~~~ 177 (353)
....++++|.+.+.|+|.|++.++ .+.+..++|++|||+..
T Consensus 187 ~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~ 234 (886)
T 2qtc_A 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMD 234 (886)
T ss_dssp CCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGG
T ss_pred ccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCcccc
Confidence 445577888899999999999876 55678999999999999
No 31
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=95.75 E-value=0.0026 Score=66.42 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=74.7
Q ss_pred CccccccccccchhhhhhhhcceeeecC----------CcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKN----------EKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g----------~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
+....++++|.+++.|+|.|+|.++.+. +..++|+.|||+.. |+ |.+..+|.+
T Consensus 134 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 213 (690)
T 3m49_A 134 GVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI 213 (690)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB
T ss_pred ccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCe
Confidence 3445678899999999999999874332 67899999999997 11 333344444
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHc-C-CCeehhHHHHhhccC
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEIN-N-NPILRFKTLLFKKKL 256 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~-~-~Pv~~~~~~l~~~~~ 256 (353)
..... ......+..+| |.++.. |+.+++.+. +.+++ . +|+++
T Consensus 214 ~i~~~~~~~~~~d~~~~~~a~------------G~~~~~v~DG~d~~~l~~Al----~~a~~~~~~P~lI---------- 267 (690)
T 3m49_A 214 SLDGDLNRSFSESVEDRYKAY------------GWQVIRVEDGNDIEAIAKAI----EEAKADEKRPTLI---------- 267 (690)
T ss_dssp CSSSBGGGTCCCCHHHHHHHH------------TCEEEEESCTTCHHHHHHHH----HHHHHCCSSCEEE----------
T ss_pred ecccchhhccchhHHHHHHHc------------CCcEEEEecCCCHHHHHHHH----HHHHhcCCCCEEE----------
Confidence 32110 01111222222 555432 666666544 44444 4 99999
Q ss_pred CCHHHHHHhhccCCCCCcccc----CCHHHHHHHHh
Q psy16520 257 WSEEQDEQIGHHSTSDDSTAY----RSKSEVQEYEI 288 (353)
Q Consensus 257 ~~e~~~~R~~~Hs~~Dd~~~y----r~~~e~~~~~~ 288 (353)
++.|.+-.|++...++..+ -+.++++...+
T Consensus 268 --~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~~ 301 (690)
T 3m49_A 268 --EVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKE 301 (690)
T ss_dssp --EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred --EEEeecccccCcccCcccccCCCCCHHHHHHHHH
Confidence 9999988888753332222 24566665543
No 32
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=95.72 E-value=0.0014 Score=67.72 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=69.8
Q ss_pred CccccccccccchhhhhhhhcceeeecC-------CcEEEEEeecchhh----------hh-------hccccccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKN-------EKVVIVYFGEGAAI----------VT-------MATPFQPQRRNS 191 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g-------~~v~~v~~Gdg~~~----------a~-------is~~~~~q~~~~ 191 (353)
+....++++|.+++.|+|.|++.++.+. +..++|+.|||+.. |+ |.+..+|.+...
T Consensus 108 g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~ 187 (632)
T 3l84_A 108 GVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIE 187 (632)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred CcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence 5566778999999999999999885432 67899999999997 11 333444444321
Q ss_pred cc-----ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHH
Q psy16520 192 ME-----EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQ 261 (353)
Q Consensus 192 ~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~ 261 (353)
.. ......+..+| |.++.. |+.+++.+.+++ ++. +|+++ ++.
T Consensus 188 ~~~~~~~~~d~~~~~~a~------------G~~~~~vdGhd~~~l~~al~~A----~~~~~P~lI------------~v~ 239 (632)
T 3l84_A 188 GDVGLAFNENVKMRFEAQ------------GFEVLSINGHDYEEINKALEQA----KKSTKPCLI------------IAK 239 (632)
T ss_dssp EEGGGTCCCCHHHHHHHT------------TCEEEEEETTCHHHHHHHHHHH----HTCSSCEEE------------EEE
T ss_pred cchhhhcChhHHHHHHHc------------CCeEEEEeeCCHHHHHHHHHHH----HhCCCCEEE------------EEe
Confidence 00 01122233333 555443 666666555444 444 99999 999
Q ss_pred HHHhhccCCC
Q psy16520 262 DEQIGHHSTS 271 (353)
Q Consensus 262 ~~R~~~Hs~~ 271 (353)
|++-.||+..
T Consensus 240 T~kG~G~~~~ 249 (632)
T 3l84_A 240 TTIAKGAGEL 249 (632)
T ss_dssp CCTTTTCGGG
T ss_pred eEeeecCCCC
Confidence 9888888753
No 33
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=93.08 E-value=0.0055 Score=63.93 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=62.5
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee---eecCC-cEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK---LKKNE-KVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~---~~~g~-~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
+++| +++++ +||.|+++++++.+... .+..+||++ .+||+ |+..+...-..+
T Consensus 175 ~~L~~li~i~-~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A------------------- 234 (680)
T 1gpu_A 175 LKLGNLIAIY-DDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQA------------------- 234 (680)
T ss_dssp TTCTTEEEEE-EECSEETTEEGGGTCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHH-------------------
T ss_pred hCCCcEEEEE-ECCCceEecccccccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH-------------------
Confidence 5677 77777 89999999988865432 356677765 34666 654433332222
Q ss_pred Ccc-cCCCcccccccccccccccCCCccChh---HhhcCHHHHHHHH
Q psy16520 196 GSR-PEGLAWVFQPLELTETTIGHHSTSDDS---TAYRSKSEVQEYE 238 (353)
Q Consensus 196 ~~a-~rgp~~~~~~~~~~~~r~~~hs~~D~~---~~yr~~~ea~~~~ 238 (353)
+. ..+|.+ |++.|+|..+|+..|.. ..|++.++...|.
T Consensus 235 -~~~~~~P~l----I~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~ 276 (680)
T 1gpu_A 235 -KLSKDKPTL----IKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLK 276 (680)
T ss_dssp -HHCTTSCEE----EEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHH
T ss_pred -HHCCCCCEE----EEEEeecccccccCCCCccCCCCCCHHHHHHHH
Confidence 22 578999 99999998888766543 6789999888775
No 34
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=89.45 E-value=0.017 Score=59.96 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=61.3
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee---eecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK---LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~---~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ +||.|+++.+++.+... .+..+||++ .+||+|+..+...-.. .
T Consensus 177 ~~L~~li~i~-~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~--------------------a 235 (651)
T 2e6k_A 177 WGLSKLIVFW-DDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKL--------------------A 235 (651)
T ss_dssp TTCTTEEEEE-EECCEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHH--------------------H
T ss_pred cCCCeEEEEE-ECCCcccccccccccCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH--------------------H
Confidence 5677 67777 89999999998876532 356677765 3466665443332222 2
Q ss_pred cccCCCcccccccccccccccCCCccChhHhh----cCHHHHHHHHHcCCCe
Q psy16520 197 SRPEGLAWVFQPLELTETTIGHHSTSDDSTAY----RSKSEVQEYEINNNPI 244 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~y----r~~~ea~~~~r~~~Pv 244 (353)
+...+|.+ |++.|+|..+|+..|. ..| ++.++...+. +..|+
T Consensus 236 ~~~~~P~l----I~~~t~kg~G~~~~~~-~~~H~~~~~~~e~~~~~-~~~~~ 281 (651)
T 2e6k_A 236 KLDERPTL----IAVRSHIGFGSPKQDS-AKAHGEPLGPEAVEATR-RNLGW 281 (651)
T ss_dssp HHSSSCEE----EEEECCTTTTSTTTTS-GGGTSSCCHHHHHHHHH-HHHTC
T ss_pred HHCCCCEE----EEEEeEeccccccccc-ccccccCCCHHHHHHHH-HHcCC
Confidence 23678999 9999999888875555 334 4566666664 44554
No 35
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=87.23 E-value=0.018 Score=59.84 Aligned_cols=91 Identities=8% Similarity=-0.062 Sum_probs=60.1
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee---eecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK---LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~---~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ +||.|+++.+++.+... .+..+||++ .+||+|+..+...-..+. .
T Consensus 173 ~~L~~li~i~-~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~-----------------~- 233 (669)
T 2r8o_A 173 LKLGKLIAFY-DDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEAR-----------------A- 233 (669)
T ss_dssp TTCTTEEEEE-EECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH-----------------H-
T ss_pred cCCCcEEEEE-ECCCcEeccccccccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHH-----------------h-
Confidence 5677 67777 89999999988855432 356667764 346666544333222221 1
Q ss_pred cccCCCcccccccccccccccCCCc-cCh---hHhhcCHHHHHHHH
Q psy16520 197 SRPEGLAWVFQPLELTETTIGHHST-SDD---STAYRSKSEVQEYE 238 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~hs~-~D~---~~~yr~~~ea~~~~ 238 (353)
...+|.+ |++.|+|..+|+. .|. ...|++.++...+.
T Consensus 234 -~~~~P~l----I~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~ 274 (669)
T 2r8o_A 234 -VTDKPSL----LMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTR 274 (669)
T ss_dssp -CCSSCEE----EEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred -cCCCCEE----EEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHH
Confidence 2568999 9999999888874 332 35789988887775
No 36
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=84.14 E-value=0.031 Score=58.43 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=51.5
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--ee-cCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LK-KNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~-~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ +||.|+++++++.+... .+..|||.. .+ ||+|+..++..-..+
T Consensus 195 ~~L~nli~i~-d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A-------------------- 253 (700)
T 3rim_A 195 QQLGNLIVFY-DRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANA-------------------- 253 (700)
T ss_dssp TTCTTEEEEE-EECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH--------------------
T ss_pred cCCCcEEEEE-ECCCcccccchhhccchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHH--------------------
Confidence 6787 78888 89999999998865432 366777765 45 787776655443222
Q ss_pred cc-cCCCcccccccccccccccCCCc
Q psy16520 197 SR-PEGLAWVFQPLELTETTIGHHST 221 (353)
Q Consensus 197 ~a-~rgp~~~~~~~~~~~~r~~~hs~ 221 (353)
+. ..+|.+ |+++|+|-.+++.
T Consensus 254 ~~~~~~P~l----I~~~T~kG~G~~~ 275 (700)
T 3rim_A 254 QAVTDRPSF----IALRTVIGYPAPN 275 (700)
T ss_dssp HHCCSSCEE----EEEECCTTTTCTT
T ss_pred HHcCCCCEE----EEEEEEeeecCCc
Confidence 22 578999 9999999766654
No 37
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=78.01 E-value=0.29 Score=49.87 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=27.2
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 412 ~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~ 444 (590)
T 1v5e_A 412 FATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFS 444 (590)
T ss_dssp SCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHH
T ss_pred CCcccChHHHHHHHHHhCC----CCeEEEEEechHHh
Confidence 4678888888999988853 46789999999987
No 38
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=77.40 E-value=0.15 Score=53.02 Aligned_cols=91 Identities=9% Similarity=-0.000 Sum_probs=58.0
Q ss_pred CCCc-cccccCCCCccccccccccchh---hhhhhhccee---eecC-CcEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLP---QAVGSAYAYK---LKKN-EKVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~---~a~G~A~g~~---~~~g-~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
+++| +++++ +||.|++++++..+.. ..+..|||.. .+|| +|+..++..-..+. .
T Consensus 175 ~~L~~li~i~-d~N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~-----------------~ 236 (673)
T 1r9j_A 175 LALEKLIVIY-DSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAK-----------------A 236 (673)
T ss_dssp HTCTTEEEEE-EECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHH-----------------H
T ss_pred hCCCcEEEEE-ECCCCccccchhhccCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHH-----------------H
Confidence 4677 67777 8999999999887653 2356677765 3466 66654443322221 1
Q ss_pred CcccCCCcccccccccccccccCCCccCh---hHhhcCHHHHHHHH
Q psy16520 196 GSRPEGLAWVFQPLELTETTIGHHSTSDD---STAYRSKSEVQEYE 238 (353)
Q Consensus 196 ~~a~rgp~~~~~~~~~~~~r~~~hs~~D~---~~~yr~~~ea~~~~ 238 (353)
...+|.+ |++.|++-.+++..|. ...+.+.++...+.
T Consensus 237 --~~~~P~l----I~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~ 276 (673)
T 1r9j_A 237 --TKGKPKM----IVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIK 276 (673)
T ss_dssp --CCSSCEE----EEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHH
T ss_pred --cCCCCEE----EEEecccccccccCCCcccccCCCCHHHHHHHH
Confidence 2568999 9999999766664433 23445666666554
No 39
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=72.79 E-value=0.36 Score=49.38 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=26.8
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+++.|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 441 ~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~ 473 (616)
T 2pan_A 441 AGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQ 473 (616)
T ss_dssp TCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHH
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEcchhhh
Confidence 4667778888899888853 46889999999987
No 40
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=62.02 E-value=0.31 Score=50.90 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=43.0
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--e-ecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--L-KKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~-~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ +||.|+++.+++.+... .+..|||+. . +||+|+..+...-. ..
T Consensus 214 ~~L~~livI~-dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~--------------------~A 272 (711)
T 3uk1_A 214 LKLNKLIALY-DDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIA--------------------KA 272 (711)
T ss_dssp TTCTTEEEEE-EECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHH--------------------HH
T ss_pred hCCCcEEEEE-ECCCcccccchhhhcCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHH--------------------HH
Confidence 6788 66666 89999999998877532 356677765 3 46655433322111 23
Q ss_pred cccCCCcccccccccccccccCCCc
Q psy16520 197 SRPEGLAWVFQPLELTETTIGHHST 221 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~hs~ 221 (353)
+...+|.+ |++.|++-.+++.
T Consensus 273 ~~~~~P~l----I~v~T~kG~G~~~ 293 (711)
T 3uk1_A 273 KRSDKPSL----ICCKTRIGNGAAT 293 (711)
T ss_dssp TTCSSCEE----EEEEC--------
T ss_pred HhCCCCEE----EEEccccccCCCC
Confidence 44678999 9999998766653
No 41
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=61.21 E-value=0.13 Score=52.85 Aligned_cols=24 Identities=8% Similarity=-0.086 Sum_probs=11.0
Q ss_pred CCCccccccCCCCccccccccccch
Q psy16520 124 KQMPVHYGSRQHHFVTISSPLATQL 148 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~vg~q~ 148 (353)
+++|+++++ +||.|+++.+++.+.
T Consensus 170 ~~~pli~vv-nnN~~~i~~~~~~~~ 193 (621)
T 2o1s_A 170 IRPDMLVIL-NDNEMSISENVGALN 193 (621)
T ss_dssp HCCSEEEEE-EECC-----------
T ss_pred hCCCEEEEE-eCCCcccCCCcchHH
Confidence 358999999 899999999888653
No 42
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=56.40 E-value=0.43 Score=49.22 Aligned_cols=72 Identities=6% Similarity=-0.023 Sum_probs=45.7
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCc
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGS 197 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~ 197 (353)
+++| +++++ +||.|+++.+++..... .+..+||.. .+||+|+..+...- +..+
T Consensus 170 ~~L~~livi~-nnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al--------------------~~A~ 228 (632)
T 3l84_A 170 HKLDNFILIY-DSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKAL--------------------EQAK 228 (632)
T ss_dssp TTCTTEEEEE-EECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEETTCHHHHHHHH--------------------HHHH
T ss_pred cCCCcEEEEE-ECCCcccccchhhhcChhHHHHHHHcCCeEEEEeeCCHHHHHHHH--------------------HHHH
Confidence 5677 55666 89999999988765532 356667765 45655543332111 1233
Q ss_pred ccCCCcccccccccccccccCCC
Q psy16520 198 RPEGLAWVFQPLELTETTIGHHS 220 (353)
Q Consensus 198 a~rgp~~~~~~~~~~~~r~~~hs 220 (353)
...+|.+ |++.|++-.+++
T Consensus 229 ~~~~P~l----I~v~T~kG~G~~ 247 (632)
T 3l84_A 229 KSTKPCL----IIAKTTIAKGAG 247 (632)
T ss_dssp TCSSCEE----EEEECCTTTTCG
T ss_pred hCCCCEE----EEEeeEeeecCC
Confidence 4678999 999998865554
No 43
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=56.20 E-value=0.74 Score=47.27 Aligned_cols=73 Identities=8% Similarity=-0.031 Sum_probs=45.0
Q ss_pred CCCccccccCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCc
Q psy16520 124 KQMPVHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGS 197 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~ 197 (353)
+++|.++++-+||.|+++.++..+... .+..+||++ .+||+|+..+... -..
T Consensus 171 ~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~a----------------------l~~ 228 (616)
T 3mos_A 171 YKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKA----------------------FGQ 228 (616)
T ss_dssp TTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHH----------------------HHS
T ss_pred cCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHH----------------------HHh
Confidence 678755444489999999887765532 356677765 3455443322111 011
Q ss_pred ccCCCcccccccccccccccCCCcc
Q psy16520 198 RPEGLAWVFQPLELTETTIGHHSTS 222 (353)
Q Consensus 198 a~rgp~~~~~~~~~~~~r~~~hs~~ 222 (353)
+..+|.+ |++.|+|-.+++..
T Consensus 229 ~~~~P~l----I~v~T~kg~G~~~~ 249 (616)
T 3mos_A 229 AKHQPTA----IIAKTFKGRGITGV 249 (616)
T ss_dssp CCSSCEE----EEEECCTTTTSTTT
T ss_pred cCCCCEE----EEEEEecccccccc
Confidence 2578999 99999988666543
No 44
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=53.92 E-value=0.43 Score=49.46 Aligned_cols=73 Identities=5% Similarity=-0.089 Sum_probs=42.7
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee---eecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK---LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~---~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ +||.|+++++++..... .+..|||.. .+||+|+..+...-. ..
T Consensus 175 ~~L~~livi~-dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~--------------------~A 233 (663)
T 3kom_A 175 LGLNKLVAFW-DDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAIN--------------------EA 233 (663)
T ss_dssp HTCTTEEEEE-EECC-----CGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHH--------------------HH
T ss_pred hCCCeEEEEE-ECCCcccccchhhhcchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHH--------------------HH
Confidence 5687 55666 89999999988876532 366777765 346665543322211 23
Q ss_pred cc-cCCCcccccccccccccccCCCc
Q psy16520 197 SR-PEGLAWVFQPLELTETTIGHHST 221 (353)
Q Consensus 197 ~a-~rgp~~~~~~~~~~~~r~~~hs~ 221 (353)
+. ..+|.+ |++.|++-.+++.
T Consensus 234 ~~~~~~P~l----I~~~T~kg~G~~~ 255 (663)
T 3kom_A 234 HSQQQKPTL----ICCKTVIGFGSPE 255 (663)
T ss_dssp HHCSSSCEE----EEEECCTTTTCTT
T ss_pred HhcCCCCEE----EEEecccccccCC
Confidence 33 578999 9999998766554
No 45
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=52.29 E-value=0.94 Score=46.98 Aligned_cols=73 Identities=7% Similarity=-0.029 Sum_probs=47.3
Q ss_pred CCC-ccccccCCCCccccccccccchhh---hhhhhccee---eecCC-cEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 KQM-PVHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK---LKKNE-KVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 ~~~-p~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~---~~~g~-~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
+++ ++++++ +||.|+++.+++.+... .+..+||.. .+||+ |+..+...-. .
T Consensus 186 ~~L~~li~i~-~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~--------------------~ 244 (675)
T 1itz_A 186 WGLGKLIAFY-DDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIK--------------------E 244 (675)
T ss_dssp TTCTTEEEEE-EECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHH--------------------H
T ss_pred hCCCcEEEEE-ECCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHH--------------------H
Confidence 566 567777 89999999988875521 356677765 34666 5543332211 1
Q ss_pred Ccc-cCCCcccccccccccccccCCCc
Q psy16520 196 GSR-PEGLAWVFQPLELTETTIGHHST 221 (353)
Q Consensus 196 ~~a-~rgp~~~~~~~~~~~~r~~~hs~ 221 (353)
.+. ..+|.+ |++.|++-.+++.
T Consensus 245 a~~~~~~P~l----I~~~T~kg~G~~~ 267 (675)
T 1itz_A 245 AKAVTDKPTL----IKVTTTIGFGSPN 267 (675)
T ss_dssp HHHCCSSCEE----EEEECCTTTTCTT
T ss_pred HHHCCCCeEE----EEEeeecccCccc
Confidence 222 568999 9999999776664
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=49.45 E-value=3.7 Score=41.19 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=31.4
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|++++.+..+.+..++|+.|||+..
T Consensus 412 ~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~ 448 (563)
T 2vk8_A 412 WGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQ 448 (563)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHH
T ss_pred hhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhh
Confidence 5677888888999999987666778899999999987
No 47
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=46.87 E-value=1.1 Score=46.01 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=19.5
Q ss_pred CCCccccccCCCCccccccccccc
Q psy16520 124 KQMPVHYGSRQHHFVTISSPLATQ 147 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~vg~q 147 (353)
+++|+++++ +||.|+++.+++.+
T Consensus 172 ~~~pli~Iv-nnN~~~i~~~~~~~ 194 (629)
T 2o1x_A 172 MGRKMLIVL-NDNEMSISENVGAM 194 (629)
T ss_dssp HCCSEEEEE-EECSBSSSBCCSSH
T ss_pred hCCCEEEEE-ECCCCCCCCChhHH
Confidence 458999998 89999999988854
No 48
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=44.94 E-value=30 Score=28.88 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy16520 249 TLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNS 325 (353)
Q Consensus 249 ~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a 325 (353)
-.|-..|.|+-.+..+-.-|+. ++.++..+.--..-+.-+.+.|+++|++|++||++-.+|+.+.....
T Consensus 77 vaL~~~G~f~wdE~R~a~E~~l--------~p~~Y~~~sYYe~WL~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 77 ECLAWRGVWTAEERRRKQNCDV--------GQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp HHHHHTTSCCHHHHHHHHHTTT--------CHHHHHHSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHhcC--------ChhhccCCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 3466778887665543322221 12222211111125777999999999999999999988888876543
No 49
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=41.70 E-value=1 Score=46.82 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--ee-cCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LK-KNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~-~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ +||.|+++.++...... .+..|||.. .+ ||+|+..+... . +..
T Consensus 199 ~~L~~livI~-dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~A---l-----------------~~a 257 (690)
T 3m49_A 199 LQLGRLVVLY-DSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKA---I-----------------EEA 257 (690)
T ss_dssp TTCTTEEEEE-EECSBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTTCHHHHHHH---H-----------------HHH
T ss_pred hCCCeEEEEE-ECCCeecccchhhccchhHHHHHHHcCCcEEEEecCCCHHHHHHH---H-----------------HHH
Confidence 5677 45555 89999999988654432 355666665 34 66654433221 1 123
Q ss_pred cc-cCCCcccccccccccccccCCC
Q psy16520 197 SR-PEGLAWVFQPLELTETTIGHHS 220 (353)
Q Consensus 197 ~a-~rgp~~~~~~~~~~~~r~~~hs 220 (353)
+. ..+|.+ |++.|++-.+++
T Consensus 258 ~~~~~~P~l----I~v~T~kG~G~~ 278 (690)
T 3m49_A 258 KADEKRPTL----IEVRTTIGFGSP 278 (690)
T ss_dssp HHCCSSCEE----EEEECCTTTTCT
T ss_pred HhcCCCCEE----EEEEeecccccC
Confidence 33 578999 999999874443
No 50
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=40.05 E-value=49 Score=21.58 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy16520 307 SEKQDEQLKKESKQLVLNSIRISE 330 (353)
Q Consensus 307 t~~e~~~~~~e~~~~v~~a~~~a~ 330 (353)
+..+++.++.|+-++|...+..++
T Consensus 5 ~~~dle~~KqEIL~E~RkElqK~K 28 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQKVK 28 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444
No 51
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=30.33 E-value=18 Score=36.15 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.8
Q ss_pred cccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 140 ISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 140 ~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
..+.+|..+|.|.|++++.+ +..++|+.|||+..
T Consensus 423 ~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~ 456 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQ 456 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHH
T ss_pred cchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhh
Confidence 45678888888999988853 46889999999987
No 52
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=29.90 E-value=13 Score=37.16 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.4
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +.+..++|+.|||+..
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~ 452 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVG 452 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHG
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHh
Confidence 4677888889999998864 3456889999999987
No 53
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=27.48 E-value=92 Score=26.82 Aligned_cols=41 Identities=2% Similarity=0.043 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----HHHHHHHHHhCC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQL-----VLNSIRISEKKL 333 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~-----v~~a~~~a~~~~ 333 (353)
...++..|+++|+++.++++.+.+..+.. -...+++|...|
T Consensus 20 ~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp 65 (203)
T 1ugp_A 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCH
Confidence 45789999999999999999998887776 334455555543
No 54
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=27.28 E-value=79 Score=27.76 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----HHHHHHHHHhC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQL-----VLNSIRISEKK 332 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~-----v~~a~~~a~~~ 332 (353)
+..++..|+++|+++.++++.+.+.++.. -.+.+++|...
T Consensus 40 ~~Al~~lL~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~D 84 (226)
T 3qyh_A 40 VKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVD 84 (226)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCC
Confidence 45688999999999999999988877654 33445555544
No 55
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=26.91 E-value=24 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=27.1
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++++.|||+..
T Consensus 408 ~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~ 440 (566)
T 2vbi_A 408 WGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQ 440 (566)
T ss_dssp TCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHH
T ss_pred ccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHH
Confidence 4678888888999988853 46889999999987
No 56
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=26.91 E-value=23 Score=35.42 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.2
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++++.|||+..
T Consensus 412 ~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~ 444 (568)
T 2wvg_A 412 WGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQ 444 (568)
T ss_dssp TCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHH
T ss_pred cchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHh
Confidence 4567888888999988853 56889999999987
No 57
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=26.56 E-value=20 Score=35.97 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=26.9
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.++.|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 425 ~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~ 457 (590)
T 1ybh_A 425 LGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFI 457 (590)
T ss_dssp SCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHH
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEccchhh
Confidence 4677888888999988853 46789999999987
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=26.30 E-value=23 Score=35.36 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.0
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 419 ~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~ 451 (566)
T 1ozh_A 419 QQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFL 451 (566)
T ss_dssp TCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHH
T ss_pred cccccchHHHHHHHHHhCC----CCCEEEEEcChHHh
Confidence 4567888888999888853 56889999999987
No 59
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=26.19 E-value=81 Score=27.36 Aligned_cols=40 Identities=8% Similarity=-0.088 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH-----HHHHHHHHHHHhC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESK-----QLVLNSIRISEKK 332 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~-----~~v~~a~~~a~~~ 332 (353)
+..++..|+++|+++++.++.+...+. ..-...+++|...
T Consensus 13 v~ALe~lL~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~D 57 (209)
T 4fm4_A 13 VDALFVLTKELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTD 57 (209)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCC
Confidence 456889999999999999998888776 3344555555544
No 60
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=25.68 E-value=19 Score=35.74 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=26.2
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 407 ~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~ 439 (552)
T 1ovm_A 407 WGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQ 439 (552)
T ss_dssp TCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHH
T ss_pred hHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHH
Confidence 4567777888888888753 46789999999986
No 61
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=23.96 E-value=76 Score=27.56 Aligned_cols=40 Identities=15% Similarity=-0.075 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----HHHHHHHHHhC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQL-----VLNSIRISEKK 332 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~-----v~~a~~~a~~~ 332 (353)
+..++..|+++|+++.++++.+.+..+.. -...+++|...
T Consensus 23 ~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D 67 (207)
T 3a8g_A 23 AWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 67 (207)
T ss_dssp HHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC
Confidence 34688999999999999999988877766 33445555544
No 62
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=22.33 E-value=27 Score=34.91 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=26.2
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++++.|||+..
T Consensus 435 ~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~ 467 (573)
T 2iht_A 435 CSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFH 467 (573)
T ss_dssp SCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHH
T ss_pred CcccccHHHHHHHHHHhCC----CCcEEEEEccHHHH
Confidence 3667788888888888753 46789999999987
No 63
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=21.79 E-value=27 Score=34.83 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=24.8
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|..+|.|.|.+++.+ +..++++.|||+..
T Consensus 422 g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~ 453 (565)
T 2nxw_A 422 AGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ 453 (565)
T ss_dssp CCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH
T ss_pred ccccccchHHHHHHHhCC----CCcEEEEEechHHH
Confidence 466777777888887743 45788999999987
No 64
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=21.72 E-value=1.1e+02 Score=26.68 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----HHHHHHHHHhC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQL-----VLNSIRISEKK 332 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~-----v~~a~~~a~~~ 332 (353)
+..++..|+++|+++.++++.+.+.++.. -.+.+++|...
T Consensus 29 ~~Al~~ll~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D 73 (216)
T 3hht_A 29 AKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 73 (216)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 55789999999999999999988776544 33445555543
No 65
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=21.52 E-value=36 Score=34.13 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.5
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 424 g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~ 455 (589)
T 2pgn_A 424 GILGCGFPMALGAQLAEP----NSRVFLGTGDGALY 455 (589)
T ss_dssp CCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHH
T ss_pred chhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHH
Confidence 678888888999988853 46789999999987
No 66
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=21.01 E-value=1.8e+02 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=23.4
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy16520 292 PILRFKTLLFKKKLWSEKQDEQLKKES 318 (353)
Q Consensus 292 P~~~~~~~l~~~g~~t~~e~~~~~~e~ 318 (353)
-+.-+++.|+++|++|++||++..+++
T Consensus 76 WL~ale~lLvekGvit~~EL~~r~~~~ 102 (229)
T 3hht_B 76 WIATVAYNLVDTGVLDEKELDERTEVF 102 (229)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 567799999999999999999887763
No 67
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=20.95 E-value=27 Score=34.81 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=25.2
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++ .+..++++.|||+..
T Consensus 425 ~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~ 456 (568)
T 2c31_A 425 WGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG 456 (568)
T ss_dssp TTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH
T ss_pred CccccccHHHHHHHHhC-----CCCcEEEEEcchHhh
Confidence 35677778888888887 345788999999987
No 68
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=20.46 E-value=40 Score=34.64 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.4
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|..+|.|+|++++. .+..++|+.|||+..
T Consensus 513 G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~ 544 (677)
T 1t9b_A 513 GTMGYGLPAAIGAQVAK----PESLVIDIDGDASFN 544 (677)
T ss_dssp CCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHH
T ss_pred chhhchHHHHHHHHHhC----CCCeEEEEEeehHHh
Confidence 45666778888888874 356899999999987
No 69
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=20.04 E-value=29 Score=34.54 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=25.9
Q ss_pred cccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 140 ISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 140 ~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
..+++|..+|.|.|.+++ .+..++++.|||+..
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~ 451 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG 451 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh
Confidence 345677778888888887 345788999999987
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=20.03 E-value=31 Score=33.96 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.2
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~ 432 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSAN 432 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHT
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHH
Confidence 677888888899888853 35789999999986
Done!