RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16520
(353 letters)
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 190 bits (485), Expect = 2e-58
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 40 MYKTMVTLNEMDKVMYESQRQGRIS-FYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGV 98
+Y+TMV + D+ + E RQG+I FY S G+E VG AAAL P D V+ YR+ G
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 99 LMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAY 158
+ RG +++M+ +L+G KG+ +H G ++ +F + + Q+P A G+A A
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 159 KLKKNEKVVIVYFGEGAA 176
K + ++V + +FG+GA
Sbjct: 121 KYRGEDRVAVCFFGDGAT 138
Score = 72.5 bits (179), Expect = 2e-14
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 266 GHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNS 325
G HSTSDD + YR+K EV+E++ +PILR + L + + +E++ ++ E K V +
Sbjct: 231 GGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEA 289
Query: 326 IR 327
+
Sbjct: 290 VE 291
Score = 66.0 bits (162), Expect = 3e-12
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 217 GHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQI 265
G HSTSDD + YR+K EV+E++ +PILR + L + + +EE+ I
Sbjct: 231 GGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAI 278
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 149 bits (378), Expect = 5e-42
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 28 HLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRIS-FYMTSSGEEGSHVGSAAALDP- 85
+ + E + +Y+ M+ + D+ M + QRQG+I FY G+E VG+AAAL P
Sbjct: 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPG 79
Query: 86 EDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLA 145
ED ++ YR+ G L+ RG +++++ +L G KG+ +HY ++ F+ S +
Sbjct: 80 EDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVG 139
Query: 146 TQLPQAVGSAYAYKLKKNE-KVVIVYFGEGAA 176
TQ+P A G+A A K + + V + +FG+GA
Sbjct: 140 TQIPLAAGAALALKYRGTKDGVAVAFFGDGAT 171
Score = 95.0 bits (237), Expect = 5e-22
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 268 HSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIR 327
HSTSDD + YRSK EV+E++ +PI+R + L + + SE++ E ++ E+K V ++
Sbjct: 266 HSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVE 324
Query: 328 ISEKKLKPSWKEMFEDVYHEMPPHIR 353
+E P E+FEDVY E PPH+
Sbjct: 325 FAEASPYPDVSELFEDVYAEGPPHLE 350
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 140 bits (356), Expect = 2e-39
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 41 YKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLM 100
Y+ M D QR+G F +G+E VG AAAL+P D V YR+ G L+
Sbjct: 1 YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLL 60
Query: 101 WRGFSVEQMIDQLYGNIG--SSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAY 158
RG S+EQ++ +L GN S KG M +Y + + F + + Q+P G A A
Sbjct: 61 ARGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAA 120
Query: 159 KLKKNEKVVIVYFGEGAA 176
K + ++V I FG+GA
Sbjct: 121 KYRGKKEVAITLFGDGAT 138
Score = 65.0 bits (159), Expect = 6e-12
Identities = 22/72 (30%), Positives = 44/72 (61%)
Query: 265 IGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLN 324
G HS SDD + YR++ EV+E +PI R K L + + SE++ ++++KE ++ +
Sbjct: 230 YGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEE 289
Query: 325 SIRISEKKLKPS 336
+++ +E +P+
Sbjct: 290 AVKKAESDPEPN 301
Score = 59.3 bits (144), Expect = 6e-10
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 216 IGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQI 265
G HS SDD + YR++ EV+E +PI R K L + + SEE+ ++I
Sbjct: 230 YGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEI 279
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 128 bits (323), Expect = 4e-34
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 25 QSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALD 84
++ +E + +Y+ MV D QRQGR+ Y + G+E + VGSA AL
Sbjct: 14 DPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALR 73
Query: 85 PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPL 144
+D V+ YR+ ++ RG + +++ G+ ++G P + + + P+
Sbjct: 74 KDDWVFPSYRDHAAMLARGVPLVEILLYWRGD----ERGSWDP-----EGVNILPPNIPI 124
Query: 145 ATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175
TQ A G AYA KL+ + V + YFG+G
Sbjct: 125 GTQYLHAAGVAYALKLRGEDNVAVTYFGDGG 155
Score = 93.4 bits (233), Expect = 2e-21
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 266 GHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNS 325
G H+T+DD T YR+K E +E+ +PILR + L +K LW E+Q+E L++E++ V +
Sbjct: 249 GPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEA 307
Query: 326 IRISEKKLKPSWKEMFEDVYHEMPPHIR 353
+ + P ++F+ VY E+PP +
Sbjct: 308 VAEALALPPPPVDDIFDHVYAELPPELE 335
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 78.4 bits (194), Expect = 2e-16
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 34 NETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQ 92
E + +Y+ M+ + ++ + G+I F G+E VG AAL P+D V
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60
Query: 93 YRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAV 152
YR+ G + RG ++++ +L G KGK +H R+ +F + Q+P A
Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120
Query: 153 GSAYAYKLKKNEKVVIVYFGEGAA 176
G A+A K + N+ V +FG+GAA
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAA 144
Score = 51.0 bits (123), Expect = 3e-07
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 268 HSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIR 327
HS SD + YRSK EV+E+ +PI + K L ++ + SE++ +++ KE + V ++
Sbjct: 239 HSMSDPAK-YRSKEEVEEW-RKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVE 296
Query: 328 ISEKKLKPSWKEMFEDVYH 346
+E +P +E++ DVY
Sbjct: 297 FAENSPEPPVEELYTDVYA 315
Score = 40.2 bits (95), Expect = 8e-04
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQI 265
HS SD + YRSK EV+E+ +PI + K L ++ + SEE+ ++I
Sbjct: 239 HSMSDPAK-YRSKEEVEEW-RKRDPIEKLKARLIEQGIASEEELKEI 283
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 62.0 bits (151), Expect = 9e-11
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 40 MYKTMVTLNEMD---KVMYESQR-QGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRE 95
++ M + M+ +Y+++ +G Y G+E VG AA+ ED + YR+
Sbjct: 35 FFRDMYLMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGMEAAITKEDAIITAYRD 91
Query: 96 TGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSA 155
+ RG +V ++ +L G +GK +H+ + +F + Q+P G A
Sbjct: 92 HCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLA 151
Query: 156 YAYKLKKNEKVVIVYFGEGAA 176
+A K K E V +G+GAA
Sbjct: 152 FAQKYNKEENVAFALYGDGAA 172
Score = 44.7 bits (106), Expect = 4e-05
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 234 VQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGH-HSTSDDSTAYRSKSEVQEYEINNNP 292
+E+ ++N PI+ E D H HS SD + YR++ E+ +P
Sbjct: 242 AKEHALSNGPIVL-------------EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDP 288
Query: 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVY 345
I R + LL +L +E + + ++KE ++ V +++ +++ P E+F +VY
Sbjct: 289 IERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341
Score = 31.6 bits (72), Expect = 0.52
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQI 265
HS SD + YR++ E+ +PI R + LL +L +E + + I
Sbjct: 264 HSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDI 310
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 47.2 bits (112), Expect = 7e-06
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 32 VDNETNIRMYKTMV---TLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDL 88
V E + +Y+ MV + +M MY R F +G+E G L +D
Sbjct: 83 VTREEGLELYEDMVLGRSFEDMCAQMY--YRGKMFGFVHLYNGQEAVSTGFIKLLKKDDS 140
Query: 89 VYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQL 148
V + YR+ + +G ++ +L+G +G+ +H S++H+ + + + +
Sbjct: 141 VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 200
Query: 149 PQAVGSAYAYKLKKN-------EKVVIVYFGEGAA 176
P A G+A++ K ++ + V + +FG+G
Sbjct: 201 PVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTC 235
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 42.5 bits (100), Expect = 2e-04
Identities = 62/353 (17%), Positives = 139/353 (39%), Gaps = 67/353 (18%)
Query: 31 NVDNETNIRMYKTMV---TLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPED 87
N+++ + +Y+ M+ +M MY R F +G+E G L D
Sbjct: 16 NINSMWLLVLYEDMLLGRNFEDMCAQMY--YRGKMFGFVHLYNGQEAVSTGVIKLLAETD 73
Query: 88 LVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQ 147
V + YR+ + +G + ++ +L+G +G+ +H S H+F+ + +
Sbjct: 74 YVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEG 133
Query: 148 LPQAVGSAYAYKLKKN-------EKVVIVYFGEGAA-------IVTMATPFQPQRRNSME 193
+P A+G+A+ ++ +V +FG+G + MA ++
Sbjct: 134 IPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWK-------- 185
Query: 194 EMGSRPEGLAWVFQPLELTETTIG--HHSTSDDSTAYRSKSEVQEYE------INNNPIL 245
L +F +E + IG HH RS S + ++ + +
Sbjct: 186 --------LPIIFV-VENNQWAIGMAHH---------RSTSIPEIHKKAEAFGLPGIEVD 227
Query: 246 RFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYR-------------SKSEVQEYEINNNP 292
L ++ + + G T ++ YR SK E +E + +P
Sbjct: 228 GMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQE-KEAWVARDP 286
Query: 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVY 345
I + K+ + +L S+K+ ++++E K + +++ + +P+ ++ + ++
Sbjct: 287 IKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLF 339
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 36.1 bits (84), Expect = 0.011
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 111 DQLYGNIGSSDK-GKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIV 169
+ + G+S + R+ T + LP A+G+A A ++ V+
Sbjct: 14 AIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAP----DRPVVC 69
Query: 170 YFGEGAAIVTMA 181
G+G ++T
Sbjct: 70 IAGDGGFMMTGQ 81
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 34.3 bits (79), Expect = 0.093
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 228 YRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYE 287
K +VQ ++IN P L K L S + + + S+ SK +
Sbjct: 33 TGDKYDVQVFDINEPPFLEASENNIKSYLESFAKKDNVLIAK----SSGVPSKDNKTKDH 88
Query: 288 INNNPILRFKTL---LFKKKLWSEKQDEQLKKESKQLVLN---SIRISEKKLKPSWKEMF 341
N + KT+ +S+++ EQLKKE + N SI + L +
Sbjct: 89 FTFNKLYGNKTIPNKFQSYPTYSKEKPEQLKKEQFYFIKNGRLSITKLQDYLNQLGSKFA 148
Query: 342 ED 343
+D
Sbjct: 149 KD 150
>gnl|CDD|225733 COG3192, EutH, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 389
Score = 32.8 bits (75), Expect = 0.25
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 19/83 (22%)
Query: 11 FKK--ERLGRYSGSN-----GQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI 63
FKK ++G+Y G N G + L+N NI M+ M ++ KV+ +
Sbjct: 279 FKKPLMKVGKYLGMNEIAAAGMVATLAN-----NIPMFGMMKDMDTRGKVI-------NV 326
Query: 64 SFYMTSSGEEGSHVGSAAALDPE 86
+F ++++ G H+G A
Sbjct: 327 AFAVSAAFVLGDHLGFTAGNMNA 349
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 32.4 bits (73), Expect = 0.47
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 5/139 (3%)
Query: 197 SRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKL 256
R L + +L H+ S + T + E EYE+ + + L K+
Sbjct: 201 RREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKV 260
Query: 257 ----WSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDE 312
+ EQ ++ + R Q E L+ K + E E
Sbjct: 261 LLLSATPEQLKEEDLFARLRLLDPLRLADLSQILEKFVRETLKLSARDLKDE-LKELLAE 319
Query: 313 QLKKESKQLVLNSIRISEK 331
E + +S +
Sbjct: 320 LRLSEDLLNAPEPVDLSAE 338
>gnl|CDD|202979 pfam04346, EutH, Ethanolamine utilisation protein, EutH. EutH is a
bacterial membrane protein whose molecular function is
unknown. It has been suggested that it may act as an
ethanolamine transporter, responsible for carrying
ethanolamine from the periplasm to the cytoplasm.
Length = 354
Score = 31.0 bits (71), Expect = 0.86
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 11 FKK--ERLGRYSGSNGQSSH--LSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFY 66
FKK E+LG+ G N + ++ + N NI M+ M ++ KV+ ++F
Sbjct: 260 FKKPLEKLGKLLGMNEVGAAGLVATLAN--NIPMFGLMKDMDPRGKVI-------NVAFA 310
Query: 67 MTSSGEEGSHVGSAAALDPE 86
++++ G H+G A P
Sbjct: 311 VSAAFVFGDHLGFTAGFQPS 330
>gnl|CDD|237906 PRK15086, PRK15086, ethanolamine utilization protein EutH;
Provisional.
Length = 372
Score = 29.8 bits (68), Expect = 1.9
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 11 FKK--ERLGRYSGSNGQSSH--LSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFY 66
FKK ++G+ G N ++ ++ + N NI M+ M ++ KV+ ++F
Sbjct: 262 FKKPLMKVGKLLGMNEVAAAGMVATLAN--NIPMFGMMKDMDPRGKVI-------NVAFA 312
Query: 67 MTSSGEEGSHVGSAAALDPE 86
++++ G H+G A + P
Sbjct: 313 VSAAFVLGDHLGFTAGVQPT 332
>gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 160
amino acids in length. This domain is found associated
with pfam00225. This domain is found associated with
pfam00225. This domain has two conserved sequence
motifs: EVE and ESA.
Length = 162
Score = 28.9 bits (65), Expect = 2.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 299 LLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFE 342
L KLWS +D + +ES LV + E+ L KEMF
Sbjct: 114 LQLANKLWSNPKDMEHVRESASLVAKLVGFVEQGLAS--KEMFG 155
>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family.
Length = 424
Score = 29.4 bits (66), Expect = 3.4
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 209 LELTETTIGHHSTS----DDSTAYRSKSEVQ-EYEINNNPILRF--KTLLFKKKLWSEEQ 261
L+L IG S + S ++ Q +YE N K L K++
Sbjct: 282 LDLANPNIGDAPISSQMENWSCSFYGYENGQSQYESYENMTKPCSTKVLTQGKQV----- 336
Query: 262 DEQIGHHSTSDDST--AYRSKSEVQEYEINNNPILR 295
E++G +D+ YR +S VQEY N LR
Sbjct: 337 AEKVGTEYAADERGRFFYRHRSAVQEYRANFIHKLR 372
>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8
family domain in Tripeptidyl aminopeptidases_II.
Tripeptidyl aminopeptidases II are member of the
peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Tripeptidyl aminopeptidase II removes tripeptides from
the free N terminus of oligopeptides as well as having
endoproteolytic activity. Some tripeptidyl
aminopeptidases have been shown to cleave tripeptides
and small peptides, e.g. angiotensin II and glucagon,
while others are believed to be involved in MHC I
processing.
Length = 412
Score = 29.2 bits (66), Expect = 3.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 36 TNIRMYKTMVTLNEMDKVMYESQ--RQGRISFYMTSSGEEGSHVGS-AAALDPED 87
TN R + T E D + Y G + +T SG G+HV AAA PE+
Sbjct: 148 TNYREEREYATFGEQDLLNYSVNIYDDGNLLSIVTDSGAHGTHVAGIAAAHFPEE 202
>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region. This
region is composed of WD40 repeats.
Length = 429
Score = 29.1 bits (66), Expect = 4.2
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 282 EVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKK-ESKQLVLNSI 326
V YEI+ L FKT L +K +E L+ + L+ I
Sbjct: 248 NVVSYEIDPT-ELEFKTALLRKDY-----EEVLRIIANSNLLGQKI 287
>gnl|CDD|234102 TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase,
methanol/ethanol family. This protein family has a
phylogenetic distribution very similar to that coenzyme
PQQ biosynthesis enzymes, as shown by partial
phylogenetic profiling. Genes in this family often are
found adjacent to the PQQ biosynthesis genes themselves.
An unusual, strained disulfide bond between adjacent Cys
residues contributes to PQQ-binding, as does a Trp
residue that is part of a PQQ enzyme repeat (see
pfam01011). Characterized members include the
dehydrogenase subunit of a membrane-anchored, three
subunit alcohol (ethanol) dehydrogenase of Gluconobacter
suboxydans, a homodimeric ethanol dehydrogenase in
Pseudomonas aeruginosa, and the large subunit of an
alpha2/beta2 heterotetrameric methanol dehydrogenase in
Methylobacterium extorquens.
Length = 526
Score = 28.8 bits (65), Expect = 4.8
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 69 SSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGN 116
SG E G A D + TG L+WR ++V + L G
Sbjct: 172 ISGGEFGVRGYVTAYDAK---------TGKLVWRRYTVPGDMGYLKGK 210
>gnl|CDD|222473 pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system.
ToxN acts as a toxin, it is part of a type III
toxin-antitoxin system. It acts as a ribosome
independent endoribonuclease. It interacts with, and is
inhibited by, the RNA antitoxin, ToxI. Three ToxN
monomers bind to three ToxI monomers to create a
trimeric ToxN-ToxI complex.
Length = 160
Score = 28.0 bits (63), Expect = 5.3
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 280 KSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQL 321
SE++E +IN ++K LL K+ + +K +++ K++++L
Sbjct: 90 DSELKEIDINKEKDEKYKNLLQKQLRFIKKNKDKILKKAEKL 131
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 28.2 bits (64), Expect = 6.0
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 88 LVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISS-PLAT 146
+YA G E + + +GS +P H V +++ L
Sbjct: 62 ALYAVLALAGY-----LPEEDLKT--FRQLGSR-----LPGHPEYGLTPGVEVTTGSLGQ 109
Query: 147 QLPQAVGSAYAYKLKKNEKVVIVYFGEG 174
L AVG A A KL + V V G+G
Sbjct: 110 GLSVAVGMALAEKLLGFDYRVYVLLGDG 137
>gnl|CDD|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic
ligand-binding domain of uncharacterized ABC (Atpase
Binding Cassette)-type active transport systems that are
predicted to be involved in uptake of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (Atpase Binding Cassette)-type
active transport systems that are predicted to be
involved in uptake of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic amino
acid transporters (HAAT), such as
leucine/isoleucine/valine binding protein (LIVBP);
however its ligand specificity has not been determined
experimentally.
Length = 312
Score = 28.0 bits (63), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 75 SHVGSAAALDPEDLVYAQYRETGVLMWRGF 104
S V +AAA P+ LV Y ETG + R
Sbjct: 183 SEVAAAAAGGPDALVVIGYPETGSGILRSA 212
>gnl|CDD|184148 PRK13567, PRK13567, anthranilate synthase component I; Provisional.
Length = 468
Score = 27.8 bits (62), Expect = 9.8
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 108 QMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVG----SAYAYKLKKN 163
+MI I D + +P HH + L+ QL Q + S Y Y L +
Sbjct: 205 EMIQYFKEKITEGDMFQVVPSRIYKYAHHASQHLNQLSFQLYQNLKRQNPSPYMYYLNID 264
Query: 164 EKVVI 168
+ ++
Sbjct: 265 QPYIV 269
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.371
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,551,425
Number of extensions: 1628841
Number of successful extensions: 1134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1115
Number of HSP's successfully gapped: 54
Length of query: 353
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 255
Effective length of database: 6,590,910
Effective search space: 1680682050
Effective search space used: 1680682050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.4 bits)