RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16520
(353 letters)
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 181 bits (460), Expect = 2e-54
Identities = 133/340 (39%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 27 SHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPE 86
S ++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD
Sbjct: 42 SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNT 101
Query: 87 DLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLAT 146
DLV+ Q RE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLAT
Sbjct: 102 DLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLAT 161
Query: 147 QLPQAVGSAYAYKLKKNEKVVIVYFGEG-------------AAIVTMATPFQPQRRNSME 193
Q+PQAVG+AYA K +VVI YFGEG AA + F +
Sbjct: 162 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAI 221
Query: 194 EMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFK 253
+ + + +D A + ++
Sbjct: 222 STPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVA----------EN 271
Query: 254 KKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQ 313
+ E +IGH STSDDS+A+RS EV ++ ++PI R + L + W E+Q++
Sbjct: 272 QPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKA 331
Query: 314 LKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
+K+S++ V+ + +E+K KP+ +F DVY EMP +R
Sbjct: 332 WRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLR 371
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 178 bits (451), Expect = 6e-53
Identities = 96/335 (28%), Positives = 143/335 (42%), Gaps = 15/335 (4%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++D + + + M+ D M +QRQ ++SFYM S GEE G A AL+ D+ +
Sbjct: 70 DIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
YR+ +LM R S+ +MI QL N KG+Q+P+ Y R+ F TIS LATQ Q
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG-----SRPEGLAWV 205
AVG A A +K + K+ + G+GA + + +
Sbjct: 190 AVGWAMASAIKGDTKIASAWIGDGA--TAESDFHTALTFAHVYRAPVILNVVNNQWAIST 247
Query: 206 FQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQD-EQ 264
FQ + E+T A + + E +
Sbjct: 248 FQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307
Query: 265 IGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLN 324
G HSTSDD + YR + + +PI R K L K WSE++ + E + V+
Sbjct: 308 AGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA 366
Query: 325 SIRISEKKLK------PSWKEMFEDVYHEMPPHIR 353
+ + +E+ PS MFEDVY EMP H+R
Sbjct: 367 AQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 401
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 165 bits (419), Expect = 1e-48
Identities = 60/339 (17%), Positives = 132/339 (38%), Gaps = 26/339 (7%)
Query: 25 QSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALD 84
+ + +E + + MV +D+ RQGR+ FY ++G+E S + S AL+
Sbjct: 31 NEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE 90
Query: 85 PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPL 144
ED + YR+ ++W G + Q G+ + + + + +
Sbjct: 91 KEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPE---------GVNVLPPQIII 141
Query: 145 ATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAW 204
Q QA G A K++ + V I Y G+G Q + G+ +
Sbjct: 142 GAQYIQAAGVALGLKMRGKKAVAITYTGDG-------GTSQGDFYEGINFAGAFKAPAIF 194
Query: 205 -VFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRF---------KTLLFKK 254
V T + + + + + +++ L + + +
Sbjct: 195 VVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG 254
Query: 255 KLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQL 314
E + G H+ S D E++ +P++RF+ L K LWSE+++ +
Sbjct: 255 PTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNV 314
Query: 315 KKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
+++K+ + +I+ +++ K ++ ++ E+P +++
Sbjct: 315 IEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLK 353
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 157 bits (398), Expect = 1e-45
Identities = 64/329 (19%), Positives = 127/329 (38%), Gaps = 18/329 (5%)
Query: 32 VDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVY 90
+ E ++ Y+ M T+ M+ + +Q I F G+E VG A ++P D +
Sbjct: 27 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 86
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
YR G RG SV +++ +L G G KGK +H ++ + + + Q+P
Sbjct: 87 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFY--GGNGIVGAQVPL 144
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLE 210
G A A K ++V + +G+GAA + ++ +
Sbjct: 145 GAGIALACKYNGKDEVCLTLYGDGAANQGQI-------FEAYNMAALWKLPCIFICENNR 197
Query: 211 LTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTL--------LFKKKLWSEEQD 262
T + + R + + + K + E Q
Sbjct: 198 YGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQT 257
Query: 263 EQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLV 322
+ H SD +YR++ E+QE ++PI+ K + L S ++ +++ E ++ +
Sbjct: 258 YRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEI 317
Query: 323 LNSIRISEKKLKPSWKEMFEDVYHEMPPH 351
++ + + +P +E+ +Y PP
Sbjct: 318 EDAAQFATADPEPPLEELGYHIYSSDPPF 346
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 153 bits (387), Expect = 5e-44
Identities = 82/331 (24%), Positives = 154/331 (46%), Gaps = 13/331 (3%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPE-DLV 89
+++ E R+Y+ M+ +D+ R G+ SF ++G E + V A A+ P D V
Sbjct: 27 DLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWV 86
Query: 90 YAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLP 149
+ YR+ G+ + G +++++ Q+ +KG+QMP H GS+ +F T++SP+A+ +P
Sbjct: 87 FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 146
Query: 150 QAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPL 209
A G+A + KL + +V + FG+GA N G+ +A
Sbjct: 147 PAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI----NFAAVQGAPAVFIAENNFYA 202
Query: 210 ELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKK-------LWSEEQD 262
+ HS + A+ + + + ++ E +
Sbjct: 203 ISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRV 262
Query: 263 EQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLV 322
+ G HS++DD + YR K EV + +PI RF+ L + LW+E+ +E +++E + +
Sbjct: 263 YRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAEL 321
Query: 323 LNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
++ +E+ + MFEDV+ E P H+
Sbjct: 322 ERGLKEAEEAGPVPPEWMFEDVFAEKPWHLL 352
>d1bm8a_ d.34.1.1 (A:) DNA-binding domain of Mlu1-box binding
protein MBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 99
Score = 28.9 bits (65), Expect = 0.23
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 279 SKSEVQEYEINNNPILRFK-------TLLFKKKLWSE-KQDEQLKKESKQLVLNSIRISE 330
S +V E+ + I++ K T + K +++ K+ L+KE + ++
Sbjct: 8 SGVDVYEFIHSTGSIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGF 67
Query: 331 KKLKPSW 337
K + +W
Sbjct: 68 GKYQGTW 74
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 26.7 bits (59), Expect = 1.7
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 21 GSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVG 78
GS+G SS L N D+ T+ M ++ L D+V+ Q+ G + F T+ G G
Sbjct: 1 GSSG-SSGLPNSDHTTSRAMLTSL-GLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAG 56
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 25.8 bits (56), Expect = 7.1
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 150 QAVGSAYAYKLKKNEKVVIVYFGEGAA 176
+A+ A +++++E+VV+ GE
Sbjct: 12 KAINMALHEEMERDERVVV--LGEDVG 36
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 274 STAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEK 309
YRS + + N ++ +F+K+L+SE
Sbjct: 273 EQNYRSSGRILKA---ANILIANNPHVFEKRLFSEL 305
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 25.4 bits (55), Expect = 8.4
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 150 QAVGSAYAYKLKKNEKVVIVYFGEGAA 176
QA+ SA L++++ VV+ +G+
Sbjct: 9 QALRSAMDVMLERDDNVVV--YGQDVG 33
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 25.5 bits (55), Expect = 9.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 150 QAVGSAYAYKLKKNEKVVIVYFGEGAAI 177
Q+V SA L K+ VI FGE A
Sbjct: 24 QSVTSALDNSLAKDPTAVI--FGEDVAF 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.371
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,647
Number of extensions: 56653
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 18
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.8 bits)