BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16521
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 22 FMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHI 57
++ G P+GS +AN + W ST++F E++ +I
Sbjct: 270 YVGSGITWGTPDGSKPYANATNWISTKVFPESLGYI 305
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 22 FMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHI 57
++ G P+GS +AN + W ST++F E++ +I
Sbjct: 270 YVGSGITWGTPDGSKPYANATNWISTKVFPESLGYI 305
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 22 FMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHI 57
++ G P+GS +AN + W ST++F E++ +I
Sbjct: 270 YVGSGITWGTPDGSKPYANATNWISTKVFPESLGYI 305
>pdb|1ZGD|A Chain A, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
Resolution
pdb|1ZGD|B Chain B, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
Resolution
Length = 312
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 53 TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPP 100
++K ++N + + PA+ ++ + Q + E+C A GI L F P
Sbjct: 169 SVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSP 216
>pdb|2BGQ|A Chain A, Apo Aldose Reductase From Barley
pdb|2BGS|A Chain A, Holo Aldose Reductase From Barley
pdb|2VDG|A Chain A, Barley Aldose Reductase 1 Complex With Butanol
Length = 344
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 53 TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVA 112
T+ + ++++K PA+ M+ H ++ + E C+ GI + + P + E
Sbjct: 193 TVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSEKNLAHDP 252
Query: 113 VFSPFKNRL 121
V N+L
Sbjct: 253 VVEKVANKL 261
>pdb|3B3D|A Chain A, B.Subtilis Ytbe
pdb|3B3D|B Chain B, B.Subtilis Ytbe
pdb|3B3D|C Chain C, B.Subtilis Ytbe
Length = 314
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 41 KSGWSSTEIFFE------------TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYC 88
K W + E ++ I H+++ + A++ P + ++ H E I YC
Sbjct: 158 KEAWRALETLYKEGRIKAIGVSNFQIHHLEDLMTAAEIKPMINQVEFHPRLTQKELIRYC 217
Query: 89 RASGITLLTFPP 100
+ GI + + P
Sbjct: 218 QNQGIQMEAWSP 229
>pdb|3D3F|A Chain A, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus
Subtilis
pdb|3D3F|B Chain B, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus
Subtilis
Length = 275
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 2 IGI-IRASGEAIPPVFVFPRVFMKD---EFLLGAPEGSLGFAN----------------- 40
+GI I+ SG A +F+ +V+ +D E L A E SL
Sbjct: 59 VGIGIKESGVAREELFITSKVWNEDQGYETTLAAFEKSLERLQLDYLDLYLIHWPGKDKY 118
Query: 41 KSGWSSTEIFFE------------TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYC 88
K W + E ++ + H++ +K ++ P + ++ H E +YC
Sbjct: 119 KDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYC 178
Query: 89 RASGITLLTFPP 100
+ GI L + P
Sbjct: 179 KGQGIQLEAWSP 190
>pdb|3F7J|A Chain A, B.Subtilis Yvgn
pdb|3F7J|B Chain B, B.Subtilis Yvgn
Length = 276
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 2 IGI-IRASGEAIPPVFVFPRVFMKD---EFLLGAPEGSLGFAN----------------- 40
+GI I+ SG A +F+ +V+ +D E L A E SL
Sbjct: 60 VGIGIKESGVAREELFITSKVWNEDQGYETTLAAFEKSLERLQLDYLDLYLIHWPGKDKY 119
Query: 41 KSGWSSTEIFFE------------TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYC 88
K W + E ++ + H++ +K ++ P + ++ H E +YC
Sbjct: 120 KDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYC 179
Query: 89 RASGITLLTFPP 100
+ GI L + P
Sbjct: 180 KGQGIQLEAWSP 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,505,436
Number of Sequences: 62578
Number of extensions: 165530
Number of successful extensions: 462
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)