Query psy16521
Match_columns 201
No_of_seqs 201 out of 1204
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 23:26:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f7t_A MOS1 transposase; RNAse 98.3 9.1E-07 3.1E-11 70.6 5.7 82 41-123 92-179 (227)
2 3f2k_A Histone-lysine N-methyl 98.1 3E-06 1E-10 67.7 4.7 82 40-122 91-177 (226)
3 3hot_A Transposable element ma 98.0 9.3E-06 3.2E-10 68.1 7.2 81 41-122 210-296 (345)
4 1cxq_A Avian sarcoma virus int 87.7 1.1 3.7E-05 32.6 5.7 76 45-125 49-124 (162)
5 2x78_A Integrase; viral protei 80.0 2.9 0.0001 31.2 5.3 59 66-125 68-126 (200)
6 1c6v_A Protein (SIV integrase) 75.7 9.5 0.00033 26.9 6.8 55 68-123 61-115 (164)
7 3l3u_A POL polyprotein; DNA in 71.3 8.6 0.0003 27.4 5.7 72 46-123 44-115 (163)
8 1c0m_A Protein (integrase); HI 71.1 9.4 0.00032 29.5 6.2 74 45-123 48-121 (238)
9 3kks_A Integrase, IN; beta-str 69.9 15 0.0005 25.5 6.6 36 68-103 54-89 (152)
10 3f9k_A Integrase; protein-prot 62.3 21 0.00072 26.7 6.5 73 45-123 93-165 (210)
11 3hph_A Integrase, IN; protein- 55.6 36 0.0012 25.4 6.8 36 68-103 112-147 (219)
12 1ex4_A Integrase; SH3-like dom 51.5 51 0.0018 25.1 7.2 54 68-122 61-114 (239)
13 3oym_A PFV integrase, P42IN; p 50.5 30 0.001 28.5 6.0 59 65-124 179-237 (395)
14 1k6y_A Integrase; HIV-1, domai 47.0 12 0.00041 28.0 2.8 53 69-122 111-163 (212)
15 2i9o_A MHB8A peptide; beta-hai 36.6 12 0.00041 19.9 0.8 6 195-200 15-20 (37)
16 3av9_A Integrase, IN; protein- 34.6 1.2E+02 0.0039 21.9 6.5 35 69-103 82-116 (183)
17 3tos_A CALS11; methyltransfera 25.7 48 0.0016 26.4 3.1 49 51-103 197-249 (257)
18 3zth_A STU0660; DNA binding, c 23.5 2.7E+02 0.0094 23.0 7.2 57 47-104 178-243 (350)
19 3l8u_A SMU.1707C, putative rRN 21.9 1.1E+02 0.0037 22.8 4.3 41 64-104 13-54 (182)
No 1
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=98.28 E-value=9.1e-07 Score=70.55 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=69.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhc-----CCCC-eEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521 41 KSGWSSTEIFFETIKHIQNQIKAS-----KENP-ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF 114 (201)
Q Consensus 41 ~~Gw~t~~i~~~wl~~f~~~~~~~-----~~~~-~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f 114 (201)
+.|-+|.+.+.++|+.+.+.+... ..+. +++++|+.+.|.+..+.+++.+.++.+++.||++.. |.|+|..+|
T Consensus 92 ~~~~in~~~y~~~L~~l~~~~~~~~p~~~~~~~~~~~~~Dna~~H~~~~~~~~~~~~~~~~~~~p~ysPd-lnpie~~~w 170 (227)
T 2f7t_A 92 PGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSDYHLF 170 (227)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHCHHHHTTSSCCEEECCCCGGGGSHHHHHHHHHHTCEECCCCTTCGG-GCHHHHTHH
T ss_pred CCceecHHHHHHHHHHHHHHHHHhChHhhccCCceEEEECCCchhhhHHHHHHHHHhCcccccCCCCCCC-cCcccchhh
Confidence 378899999999998877766421 1234 899999999999999999999999999999999988 889997799
Q ss_pred hhhHHHHHH
Q psy16521 115 SPFKNRLKA 123 (201)
Q Consensus 115 ~~lK~~~~~ 123 (201)
+.+|+.++.
T Consensus 171 ~~lk~~l~~ 179 (227)
T 2f7t_A 171 ASMGHALAE 179 (227)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999887654
No 2
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=98.07 E-value=3e-06 Score=67.67 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=67.4
Q ss_pred cCCCCCchHHHHHHHHHHHHhhh---hc--CCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521 40 NKSGWSSTEIFFETIKHIQNQIK---AS--KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF 114 (201)
Q Consensus 40 s~~Gw~t~~i~~~wl~~f~~~~~---~~--~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f 114 (201)
.+.|-||.+.+.+.|+.+.+.++ +. ..+.+++++|+.+.|.+..+.+++.+.++.+++.||++.. |.|+|..+|
T Consensus 91 ~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~~~l~~~~~~~~~~P~ySPd-lnpie~~~w 169 (226)
T 3f2k_A 91 NPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPD-LLPTNYHVF 169 (226)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHHHHHHHHTCEECCCCTTCGG-GCHHHHTHH
T ss_pred cCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHHHHHHhhcceeecCCCCCCC-cchHHHHHH
Confidence 34578999999999976544432 21 1456899999999999999999999999999999999998 899997789
Q ss_pred hhhHHHHH
Q psy16521 115 SPFKNRLK 122 (201)
Q Consensus 115 ~~lK~~~~ 122 (201)
+.+|+.++
T Consensus 170 ~~lk~~l~ 177 (226)
T 3f2k_A 170 KHLNNFLQ 177 (226)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99987764
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=98.03 E-value=9.3e-06 Score=68.09 Aligned_cols=81 Identities=14% Similarity=0.248 Sum_probs=68.1
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhc-C-----CCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhh
Q psy16521 41 KSGWSSTEIFFETIKHIQNQIKAS-K-----ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVF 114 (201)
Q Consensus 41 ~~Gw~t~~i~~~wl~~f~~~~~~~-~-----~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f 114 (201)
..+-++.+.+.++|+.+.+.+... . ++.++|++|+.+.|.+..+.+++.++++.+++.||++.. +.|+|..+|
T Consensus 210 ~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~~~~~~~~l~~~~~~~~~~p~~spd-lnpie~~~~ 288 (345)
T 3hot_A 210 PGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSDYHLF 288 (345)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTTTSHHHHHHHHHTTCEECCCCTTCGG-GCHHHHTHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCccccHHHHHHHHHcCcEeccCCCCCCC-cccccchhh
Confidence 356799999999998776655432 1 457899999999999999999999999999999999987 789997799
Q ss_pred hhhHHHHH
Q psy16521 115 SPFKNRLK 122 (201)
Q Consensus 115 ~~lK~~~~ 122 (201)
+.+|..+.
T Consensus 289 ~~lk~~~~ 296 (345)
T 3hot_A 289 ASMGHALA 296 (345)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99997654
No 4
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=87.67 E-value=1.1 Score=32.58 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHh
Q psy16521 45 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 124 (201)
Q Consensus 45 ~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~ 124 (201)
.+.+...+.|+...... +.|..+..|+-+...+..+.++|++.+|...+.+|+....--..+ ..++.+|..++..
T Consensus 49 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~E-r~~~tlk~~~~~~ 123 (162)
T 1cxq_A 49 VTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVE-RANRLLKDKIRVL 123 (162)
T ss_dssp CCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC----CHHHH-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhhhHHHHHHHHHCCCeEeeCCCCCCccCCEEe-hHHHHHHHHHHHH
Confidence 55666666665433221 346689999999998999999999999999999998754221222 2456666665544
Q ss_pred H
Q psy16521 125 F 125 (201)
Q Consensus 125 ~ 125 (201)
+
T Consensus 124 ~ 124 (162)
T 1cxq_A 124 A 124 (162)
T ss_dssp H
T ss_pred c
Confidence 3
No 5
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=80.03 E-value=2.9 Score=31.16 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHhH
Q psy16521 66 ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGF 125 (201)
Q Consensus 66 ~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~~ 125 (201)
+.+..+..|+-+...+..+.++|++.+|...+.+|+....--..+ ..++.+|..++..+
T Consensus 68 g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~E-r~~~~l~~~~~~~~ 126 (200)
T 2x78_A 68 AIPRVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVE-RKNSDIKRLLTKLL 126 (200)
T ss_dssp CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECC-------CHHH-HHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCcceehHHHHHHHHHcCceEeECCCCCCCccCHhH-hhHHHHHHHHHHHH
Confidence 567899999999998999999999999999999998765322222 24566666655443
No 6
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=75.74 E-value=9.5 Score=26.89 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=36.1
Q ss_pred CeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHH
Q psy16521 68 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKA 123 (201)
Q Consensus 68 ~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~ 123 (201)
+..+..|+-+.+.+..+.++|++.+|...+.+|+....--..+. .++.+|+.+++
T Consensus 61 ~~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~vEr-~~~~lk~~l~~ 115 (164)
T 1c6v_A 61 ITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEA-MNHHLKNQIDR 115 (164)
T ss_dssp CCEEECCCCSSTTSSHHHHHHHHHTCEEECC-----------CC-TTTHHHHHHHT
T ss_pred CCEEEeCCchhhhhHHHHHHHHHcCCeEeECCCCCCcccceehH-HHHHHHHHHHH
Confidence 57888999999999999999999999999999987653222333 56777765543
No 7
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=71.34 E-value=8.6 Score=27.40 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHH
Q psy16521 46 STEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKA 123 (201)
Q Consensus 46 t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~ 123 (201)
+.+.....+..+.... + ...+..|+-+...+..+.++|++.+|...+-+|+...---..+ ..++.+|..++.
T Consensus 44 ~~~~~~~~l~~~~~~~----~-~~~i~sD~G~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~E-r~~~~lk~~~~~ 115 (163)
T 3l3u_A 44 TGQETAYFLLKLAGRW----P-VKTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIE-SMNKELKKIIGQ 115 (163)
T ss_dssp CHHHHHHHHHHHHHHS----C-CCEEEECCCGGGGSHHHHHHHHHHTCEEEETCCCCCCSTTCCS-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHc----C-CcEEeecChHhhhhHHHHHHHHHCCceeeeCCCCCcccccHHH-HHHHHHHHHHHH
Confidence 4555555554432222 1 2578889999999999999999999999999888765332333 356777765554
No 8
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=71.11 E-value=9.4 Score=29.51 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHH
Q psy16521 45 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKA 123 (201)
Q Consensus 45 ~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~ 123 (201)
.+.+...+.|+...... +.+..+..|+-+...+..+.++|++.+|...+.+|+... -+..--..++.+|..+..
T Consensus 48 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gI~~~~~~p~~p~-~ng~vEr~~~tlk~~~~~ 121 (238)
T 1c0m_A 48 VTSVAVQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQ-GQAMVERANRLLKDRIRV 121 (238)
T ss_dssp CCHHHHHHHHHHHHHHH----CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECCSSSST-TSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CCCcEEEECCCCccccHHHHHHHHHCCCEEEecCCCCcc-cccHHHHHHHHHHHHHHH
Confidence 55666555555432221 346689999999999999999999999999999998754 222222356666666554
No 9
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=69.92 E-value=15 Score=25.54 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=32.6
Q ss_pred CeEEEeecCcccchhhHHhhhhccceEEeecCCCCC
Q psy16521 68 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKT 103 (201)
Q Consensus 68 ~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t 103 (201)
|..+..|+-+...+..+.++|++.+|...+.+|+..
T Consensus 54 p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p 89 (152)
T 3kks_A 54 VLHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYNP 89 (152)
T ss_dssp CSEEEECSCHHHHSHHHHHHHHHTTCEEEESSCSCH
T ss_pred CcEEecCCchHhhHHHHHHHHHHcCCeecccCCcCC
Confidence 788999999999999999999999999999888763
No 10
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=62.26 E-value=21 Score=26.68 Aligned_cols=73 Identities=15% Similarity=0.029 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHH
Q psy16521 45 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKA 123 (201)
Q Consensus 45 ~t~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~ 123 (201)
.+.......+..+.. ..+-+. +..|+-+...+..+.++|++.+|...+-+|+...---..+ ..++.+|..+++
T Consensus 93 ~~~~~~~~~l~~~~~----~~g~~~-i~sDnG~~F~s~~~~~~~~~~gi~~~~s~~~~p~~nG~~E-r~n~~lk~~l~~ 165 (210)
T 3f9k_A 93 ESGRQTALFLLKLAS----RWPITH-LHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVE-AMNHHLKNQISR 165 (210)
T ss_dssp CCHHHHHHHHHHHHT----TSCCSE-EEECCCTTTSSHHHHHHHHHHTCEEEESSCCCTTCTTHHH-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH----HcCCCE-EEeCCCchhhHHHHHHHHHHCCCceeeCCCcCCCcccHHH-HHHHHHHHHHHH
Confidence 355555555544322 123354 8899999999999999999999999999988754221222 245666665544
No 11
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=55.59 E-value=36 Score=25.43 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=32.5
Q ss_pred CeEEEeecCcccchhhHHhhhhccceEEeecCCCCC
Q psy16521 68 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKT 103 (201)
Q Consensus 68 ~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t 103 (201)
|..+..|+-+...+..+.++|++.+|...+-+|+..
T Consensus 112 p~~i~sDnG~~F~s~~~~~~~~~~gi~~~~s~p~~p 147 (219)
T 3hph_A 112 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNP 147 (219)
T ss_dssp CCEEEECCCHHHHSHHHHHHHHHHTCEEEESCCCCH
T ss_pred CcEEEeCCCchhhhHHHHHHHHHcCCeEeECCCCCC
Confidence 778999999999999999999999999999888763
No 12
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=51.54 E-value=51 Score=25.08 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=37.4
Q ss_pred CeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHH
Q psy16521 68 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLK 122 (201)
Q Consensus 68 ~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~ 122 (201)
+..+..|+-+...+..+.++|++.+|...+-+|+...- +..--..++.+|..++
T Consensus 61 ~~~i~sDnG~eF~s~~~~~~~~~~gI~~~~s~p~~P~~-NG~vEr~n~tlk~~l~ 114 (239)
T 1ex4_A 61 VKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQS-QGVVESMNKELKKIIG 114 (239)
T ss_dssp CCEEEECCCHHHHCHHHHHHHTTTTCEECCCCC---CS-SHHHHHHHHHHHHHHH
T ss_pred CcEEEecCcHHHHHHHHHHHHHHCCCeEEECCCCCccc-chHHHHHHHHHHHHHH
Confidence 46788899999889999999999999999988886542 2211224566666553
No 13
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=50.54 E-value=30 Score=28.49 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=43.6
Q ss_pred CCCCeEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHHHh
Q psy16521 65 KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 124 (201)
Q Consensus 65 ~~~~~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~~~ 124 (201)
.+.|..++.|+-+...+..+.++|++.+|...+.+++....--..+ ..++.+|..++..
T Consensus 179 ~g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~s~~~~p~~nG~~E-r~n~~lk~~l~~~ 237 (395)
T 3oym_A 179 IAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVE-RKHSDIKRLLTKL 237 (395)
T ss_dssp TCCCSEEEECSCHHHHSHHHHHHHHHTTCEEEECCTTCGGGGHHHH-HHHHHHHHHHHHH
T ss_pred cCCceEEEeCCCCceecHHHHHHHHHcCCceeecCCcCCcccChhh-hHHHHHHHHHHHH
Confidence 3667899999999999999999999999999999998754221222 2455566655543
No 14
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=46.98 E-value=12 Score=27.99 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=33.9
Q ss_pred eEEEeecCcccchhhHHhhhhccceEEeecCCCCCCCCCcccchhhhhhHHHHH
Q psy16521 69 ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLK 122 (201)
Q Consensus 69 ~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t~~lQPLD~~~f~~lK~~~~ 122 (201)
..+..|+-+...+..+.++|++.+|...+.+|+....--..+ ..++.+|..++
T Consensus 111 ~~i~sDnG~~f~s~~~~~~~~~~gi~~~~s~p~~p~~nG~~E-r~~~~lk~~l~ 163 (212)
T 1k6y_A 111 KTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIE-SMNKELKKIIG 163 (212)
T ss_dssp CEEECCCSTTTTSHHHHHHHHHHTCEECCC---------HHH-HHHHHHHHHHH
T ss_pred eEEEcCCCcccccHHHHHHHHHCCCeeeECCCCCCcchhHHH-HHHHHHHHHHH
Confidence 688899999999999999999999999998887654211112 24555555543
No 15
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=36.61 E-value=12 Score=19.90 Aligned_cols=6 Identities=83% Similarity=1.647 Sum_probs=2.3
Q ss_pred ccCcCC
Q psy16521 195 GGGVGG 200 (201)
Q Consensus 195 ~~~~~~ 200 (201)
|||+||
T Consensus 15 gggggg 20 (37)
T 2i9o_A 15 GGGGGG 20 (37)
T ss_dssp CCCCSC
T ss_pred CCCCcc
Confidence 333333
No 16
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=34.61 E-value=1.2e+02 Score=21.87 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.1
Q ss_pred eEEEeecCcccchhhHHhhhhccceEEeecCCCCC
Q psy16521 69 ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKT 103 (201)
Q Consensus 69 ~lLilD~~~sh~s~~~~~~~~~~~I~l~~lP~~~t 103 (201)
..+..|+-+...+..+.++|++.+|...+-+|+..
T Consensus 82 ~~i~sDnG~ef~s~~~~~~~~~~gI~~~~s~p~~P 116 (183)
T 3av9_A 82 KTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNP 116 (183)
T ss_dssp CEEECSSHHHHHCHHHHHHHHHHTCEEECCCCSSH
T ss_pred cEEEecCchhcchHHHHHHHHHCCCEEeecCCCCC
Confidence 67888999988899999999999999999888764
No 17
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=25.66 E-value=48 Score=26.38 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhcCCCCeEEEeecCc----ccchhhHHhhhhccceEEeecCCCCC
Q psy16521 51 FETIKHIQNQIKASKENPALILMDNHE----THQSMEAIEYCRASGITLLTFPPHKT 103 (201)
Q Consensus 51 ~~wl~~f~~~~~~~~~~~~lLilD~~~----sh~s~~~~~~~~~~~I~l~~lP~~~t 103 (201)
+++++.+.|.+.+ --++++|+.. ..+...+.+++.++++.+..+|-+..
T Consensus 197 ~~~le~~~p~l~~----GGvIv~DD~~~~~w~G~~~A~~ef~~~~~~~i~~~p~~~~ 249 (257)
T 3tos_A 197 KAVLEAIRPYLTK----GSIVAFDELDNPKWPGENIAMRKVLGLDHAPLRLLPGRPA 249 (257)
T ss_dssp HHHHHHHGGGEEE----EEEEEESSTTCTTCTHHHHHHHHHTCTTSSCCEECTTCSC
T ss_pred HHHHHHHHHHhCC----CcEEEEcCCCCCCChHHHHHHHHHHhhCCCeEEEccCCCC
Confidence 4445555555532 2355566652 23455667777777777777776543
No 18
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=23.51 E-value=2.7e+02 Score=23.01 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCeEEEeecCcccchhh-HH-------hhhhcc-ceEEeecCCCCCC
Q psy16521 47 TEIFFETIKHIQNQIKASKENPALILMDNHETHQSME-AI-------EYCRAS-GITLLTFPPHKTD 104 (201)
Q Consensus 47 ~~i~~~wl~~f~~~~~~~~~~~~lLilD~~~sh~s~~-~~-------~~~~~~-~I~l~~lP~~~t~ 104 (201)
.+.+..+|+-+...+ ....+++||++-+-...++.+ +. +++++. +.-.+++|+...-
T Consensus 178 ~ekl~~fL~mL~~~l-s~~t~k~LLV~kNiD~~Ls~~sy~~i~~~~~~ls~k~~nl~fi~fpS~egY 243 (350)
T 3zth_A 178 IDKLSLFLEMLDHLL-SQTTEKYLIVLKNIDGFISEESYTIFYRQICHLVKKYPNLTFILFPSDQGY 243 (350)
T ss_dssp HHHHHHHHHHHHHHH-TTCCSCEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCTTEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHH-hcCCCcEEEEEeCHHHhhcHHHHHHHHHHHHHHHhhCCCeEEEEEecCCCc
Confidence 445555555554444 345789999998888887643 33 334455 6889999987654
No 19
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=21.93 E-value=1.1e+02 Score=22.77 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=30.8
Q ss_pred cCCCCeEEEeecCcccchh-hHHhhhhccceEEeecCCCCCC
Q psy16521 64 SKENPALILMDNHETHQSM-EAIEYCRASGITLLTFPPHKTD 104 (201)
Q Consensus 64 ~~~~~~lLilD~~~sh~s~-~~~~~~~~~~I~l~~lP~~~t~ 104 (201)
....+.++++|+-....+. .+.+.|...++..+.+++.+..
T Consensus 13 ~~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~ 54 (182)
T 3l8u_A 13 LTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFP 54 (182)
T ss_dssp --CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSC
T ss_pred cCCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCC
Confidence 3456789999987777665 5677888899999998887543
Done!