RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16521
(201 letters)
>gnl|CDD|217410 pfam03184, DDE_1, DDE superfamily endonuclease. This family of
proteins are related to pfam00665 and are probably
endonucleases of the DDE superfamily. Transposase
proteins are necessary for efficient DNA transposition.
This domain is a member of the DDE superfamily, which
contain three carboxylate residues that are believed to
be responsible for coordinating metal ions needed for
catalysis. The catalytic activity of this enzyme
involves DNA cleavage at a specific site followed by a
strand transfer reaction. Interestingly this family also
includes the CENP-B protein. This domain in that protein
appears to have lost the metal binding residues and is
unlikely to have endonuclease activity. Centromere
Protein B (CENP-B) is a DNA-binding protein localised to
the centromere.
Length = 215
Score = 80.9 bits (200), Expect = 6e-19
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 1 MIGIIRASGEAIPPVFVF----PRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFE-TIK 55
+I A GE +PP+ + PR F ++ P ANK+ W + EIF E K
Sbjct: 45 VICANAAGGEKLPPLVIGKGKNPRAFKFEKK--PKPLPWEYKANKNAWMTDEIFEEWLEK 102
Query: 56 HIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFS 115
+++ + L+++D H +H + E + C+ + I LL P H T LQPLD VFS
Sbjct: 103 VFDPRMQPAPGRKVLLILDGHGSHPTDEFMRSCKLNNIILLFLPAHSTSLLQPLDQGVFS 162
Query: 116 PFKNRLKAGFKKWTSDNPGSIS 137
K + K ++S
Sbjct: 163 SLKAAYRRQLLKKALAGIETLS 184
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 42.4 bits (100), Expect = 8e-05
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 135 SISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPT 177
S+ N NNNNNNNN N+NN NNN N +
Sbjct: 9 SVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQ 51
Score = 40.9 bits (96), Expect = 2e-04
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 138 TEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPP 175
+H+N ++N NNNNNNNN N+NN N P
Sbjct: 8 LSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45
Score = 40.1 bits (94), Expect = 4e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 131 DNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPP 176
+ +S + ++N NNNNNNNN N+NN NN + A+
Sbjct: 3 NLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGK 48
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTT 178
+NN ++N NNNNNNNN N+ N +
Sbjct: 10 VHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45
Score = 36.6 bits (85), Expect = 0.005
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 122 KAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNT 166
++ S + + ++NNNNN N+NN NNN NN +
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45
Score = 36.6 bits (85), Expect = 0.005
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPP 176
++NNNNNNNN N+NN NNN NN +
Sbjct: 17 NYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQE 52
Score = 35.1 bits (81), Expect = 0.017
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTT 185
+ N + + +NN ++N NNNNN N + +
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45
Score = 34.3 bits (79), Expect = 0.034
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTT 187
N N + + +NN ++N NNN N + P +
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45
Score = 34.3 bits (79), Expect = 0.037
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 142 HNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTT 186
+ N + + +NN ++N NNNN N + + P +
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLP 45
Score = 32.8 bits (75), Expect = 0.11
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
N N + + +NN ++N NN N + P + G
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRG 47
>gnl|CDD|222070 pfam13358, DDE_3, DDE superfamily endonuclease. This family of
proteins are related to pfam00665 and are probably
endonucleases of the DDE superfamily. Transposase
proteins are necessary for efficient DNA transposition.
This domain is a member of the DDE superfamily, which
contain three carboxylate residues that are believed to
be responsible for coordinating metal ions needed for
catalysis. The catalytic activity of this enzyme
involves DNA cleavage at a specific site followed by a
strand transfer reaction.
Length = 146
Score = 40.7 bits (96), Expect = 8e-05
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 28 LLGA--PEGSLGFANKSGWSSTEIFFETIKHIQNQIK-ASKENPALILMDNHETHQSMEA 84
L+GA PEG L + G + E F ++ +K + +I++DN H+S E
Sbjct: 41 LIGALDPEGGLAPFVEEGTVNAEDF---AAFLEKLLKPYLQPQKIVIVLDNASYHKSKEV 97
Query: 85 IEYCRAS--GITLLTFPPHKTDELQPLDVAVFSPFKNRLK 122
E A GI LL PP+ + +L P++ V+S K R++
Sbjct: 98 QELVEAEAAGIELLYLPPY-SPDLNPIE-LVWSVLKRRVR 135
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 39.8 bits (93), Expect = 6e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGG 200
T + + T PT T+T+TTTTT+ GGG+ G
Sbjct: 816 TTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICG 852
Score = 33.7 bits (77), Expect = 0.061
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVG 199
+ T+P T+TTTTT+ + TT GG+ G +
Sbjct: 820 PSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGPIV 855
Score = 32.5 bits (74), Expect = 0.14
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGGL 201
T T + T TTTT+ + TTT G+ G + GL
Sbjct: 823 TQTTSPTQTSTSTTTTTSPSQTTTGGGICGPIVIIVGL 860
Score = 29.4 bits (66), Expect = 1.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 168 TATTPIPPPTTTTTTTTTTTTT 189
T+ + T T T TTT++ +
Sbjct: 800 ETTSVVITKTVTQTQTTTSSPS 821
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 36.5 bits (84), Expect = 0.006
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 110 DVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTA 169
D V+S + + K G K I H NN ++N+NN++ +++N+ +
Sbjct: 296 DSYVYSNHQKKAKTGDPK-----------NIIHRNNGSSNSNNDDTSSSNHLGSNRISNR 344
Query: 170 TTPIPPPTTTTTTTTTTT 187
P TTT T T
Sbjct: 345 NPSSPYKKQTTTKHTNNT 362
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 36.5 bits (84), Expect = 0.007
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 130 SDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTT 178
S NP E+ NNNN+N+NNNNNN + T ATT T
Sbjct: 497 SPNP-----ELPANNNNSNSNNNNNNGADRKEAAATTGNATTTSNGSGT 540
Score = 31.9 bits (72), Expect = 0.19
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 148 NNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGV 198
NNNN+N+NNNNNN TT TT G G V
Sbjct: 504 ANNNNSNSNNNNNNG------------ADRKEAAATTGNATTTSNGSGTSV 542
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 35.8 bits (82), Expect = 0.013
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTN 165
D G T+ + NNN NN ++NNNNNNNNNN N
Sbjct: 662 DVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKIN 698
Score = 35.0 bits (80), Expect = 0.024
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 126 KKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPI 173
+ T D N NNN NN ++NNNNNNNNN + A + I
Sbjct: 657 RGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYI 704
Score = 31.2 bits (70), Expect = 0.42
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 119 NRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNN 163
NR + +NN NN ++NNNNNNNNNN N
Sbjct: 654 NRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKIN 698
Score = 27.7 bits (61), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 131 DNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTD 167
+ ++ +I + +N NNN NN ++NNN N +
Sbjct: 656 ERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNN 692
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 33.5 bits (77), Expect = 0.017
Identities = 9/43 (20%), Positives = 31/43 (72%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATT 171
TS GS+S+ +++++++N++N +++++++ ++++ T T
Sbjct: 19 TSVTSGSVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRIT 61
Score = 28.8 bits (65), Expect = 0.67
Identities = 9/59 (15%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 130 SDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTT 188
GS +T + + +++ +N++++++N++N +++ +++ +++ T TT +
Sbjct: 11 MKRSGSSNTSVTSGSVSSSGSNSSSSSSNSSNGGSSSSSSSG-----DSSSGTRITTES 64
Score = 25.8 bits (57), Expect = 8.2
Identities = 6/41 (14%), Positives = 27/41 (65%)
Query: 149 NNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
+++ +N++++++N++N ++++ +++ T TT + +
Sbjct: 26 VSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITTESES 66
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 34.4 bits (78), Expect = 0.035
Identities = 18/46 (39%), Positives = 21/46 (45%)
Query: 147 NNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVG 192
N N N N N N N NNTNT T + T + T T + T G
Sbjct: 311 NTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQG 356
Score = 33.6 bits (76), Expect = 0.051
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 145 NNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
N N N N N N N NN NT+T + T + T T + T G
Sbjct: 311 NTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQG 356
Score = 32.1 bits (72), Expect = 0.16
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTP 172
N N N NN N + + N N NTN++T T
Sbjct: 320 NTNTNTNNTNTSTPSKNTNTNTNSNTNTNS 349
Score = 31.3 bits (70), Expect = 0.29
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 133 PGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVG 192
P + + N N N N NN N + + N NTNT++ T ++ + +
Sbjct: 308 PSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSAS 367
Query: 193 GV 194
+
Sbjct: 368 AI 369
Score = 30.5 bits (68), Expect = 0.52
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 115 SPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATT 171
S N K T+ N + ST + N N N+N N N+N N N ++N ++ ++
Sbjct: 309 STNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSS 365
Score = 28.2 bits (62), Expect = 3.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 115 SPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATT 171
+P N T+ N + +T N N N N+N N N+N N N +++ +
Sbjct: 307 APSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSN 363
Score = 27.8 bits (61), Expect = 4.5
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 97 TFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNN 156
T P T+ +P + N+ T++ S ++ + N N+N N N+N N
Sbjct: 293 TAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTN 352
Query: 157 NNNNNNNTNTDTATTPI 173
N ++N N++++ + I
Sbjct: 353 ANQGSSNNNSNSSASAI 369
>gnl|CDD|233905 TIGR02515, IV_pilus_PilQ, type IV pilus secretin (or competence
protein) PilQ. A number of proteins homologous to PilQ
are involved in type IV pilus formation, competence for
transformation, type III secretion, and type II
secretion (also called the main terminal branch of the
general secretion pathway). Members of this family
include PilQ itself, which is a component of the type IV
pilus structure, from a number of species. In
Haemophilus influenzae, the member of this family is
associated with competence for transformation with
exogenous DNA rather than with formation of a type IV
pilus; the surface structure required for competence may
be considered an unusual, incomplete type IV pilus
structure [Cell envelope, Surface structures].
Length = 418
Score = 33.4 bits (77), Expect = 0.058
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 135 SISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGV 194
I+ + + N N T + T TT + +G +
Sbjct: 190 GIADKNGNGNGTAGGIGGLTNTAVTGAGGTMNPPFGDNLNVN-LATATTAGGISFALGKI 248
Query: 195 GGGV 198
G G
Sbjct: 249 GSGR 252
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 146 NNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVG 199
+ N N N NT A + PP T T GG+ +G
Sbjct: 193 DKNGNGNGTAGGIGGLTNTAVTGAGGTMNPPFGDNLNVNLATATTAGGISFALG 246
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 33.7 bits (77), Expect = 0.062
Identities = 15/44 (34%), Positives = 16/44 (36%)
Query: 156 NNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVG 199
T TT PTTTT T TTTG G G+
Sbjct: 722 PTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTPGFGIA 765
Score = 29.5 bits (66), Expect = 1.6
Identities = 12/45 (26%), Positives = 14/45 (31%)
Query: 154 NNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGV 198
+T T P TT T TTT + G G V
Sbjct: 722 PTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTPGFGIAV 766
Score = 27.9 bits (62), Expect = 4.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 167 DTATTPIPPPTTTTTTTTTTTTT 189
DT T+ P TTT TTT TT
Sbjct: 715 DTTTSEDPTTTTTPTTTGPEETT 737
Score = 27.2 bits (60), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 165 NTDTATTPIPPPTTTTTTTTTTTTT 189
+T T+ P T TTT TT T
Sbjct: 715 DTTTSEDPTTTTTPTTTGPEETTET 739
Score = 27.2 bits (60), Expect = 8.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 163 NTNTDTATTPIPPPTTTTTTTTTTTTT 189
+T T T PTTT TT T
Sbjct: 715 DTTTSEDPTTTTTPTTTGPEETTETAE 741
>gnl|CDD|205936 pfam13763, DUF4167, Domain of unknown function (DUF4167).
Length = 80
Score = 30.7 bits (70), Expect = 0.092
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTN 165
NNNN NNN + N N ++N
Sbjct: 3 RNNNNRNNNRSGGNPRNRVFDSN 25
Score = 30.4 bits (69), Expect = 0.12
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTN 165
NNNN NNN + N N
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVF 22
Score = 30.4 bits (69), Expect = 0.16
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTD 167
NNNN NNN + N N ++ D
Sbjct: 4 NNNNRNNNRSGGNPRNRVFDSNGPD 28
Score = 30.0 bits (68), Expect = 0.18
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 143 NNNNNNNNNNNNNNNNNNNNN 163
NNNN NNN + N N
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRV 21
Score = 29.6 bits (67), Expect = 0.26
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 145 NNNNNNNNNNNNNNNNNNNTNTD 167
NNNN NNN + N N D
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVFD 23
Score = 29.2 bits (66), Expect = 0.40
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 143 NNNNNNNNNNNNNNNNNNNNN 163
NNNN NNN + N N
Sbjct: 2 GRNNNNRNNNRSGGNPRNRVF 22
Score = 28.4 bits (64), Expect = 0.68
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 146 NNNNNNNNNNNNNNNNNNTNTDTATTP 172
NNNN NNN + N + P
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVFDSNGP 27
>gnl|CDD|221315 pfam11921, DUF3439, Domain of unknown function (DUF3439). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 46 to 94 amino acids in length. This domain is
found associated with pfam01462, pfam00560.
Length = 122
Score = 31.5 bits (71), Expect = 0.11
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 176 PTTTTTTTTTTTT 188
PTTTTTTTTTTTT
Sbjct: 46 PTTTTTTTTTTTT 58
Score = 29.9 bits (67), Expect = 0.36
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 173 IPPPTTTTTTTTTTT 187
I P TTTTTTTTTTT
Sbjct: 44 ICPTTTTTTTTTTTT 58
Score = 28.8 bits (64), Expect = 1.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 178 TTTTTTTTTTTT 189
TTTTTTTTTTTT
Sbjct: 47 TTTTTTTTTTTT 58
Score = 28.4 bits (63), Expect = 1.4
Identities = 14/18 (77%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Query: 174 PPPTTTTTTTTTT--TTT 189
P TTTTTTTTTT TTT
Sbjct: 46 PTTTTTTTTTTTTMPTTT 63
Score = 26.8 bits (59), Expect = 4.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 164 TNTDTATTPIPPPTTTTTTTTT 185
T T T TT PTTTT TTT
Sbjct: 48 TTTTTTTTTTTMPTTTTLPTTT 69
Score = 26.1 bits (57), Expect = 8.8
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 177 TTTTTTTTTTTTT 189
TTTTTTT TTTT
Sbjct: 52 TTTTTTTMPTTTT 64
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 32.0 bits (73), Expect = 0.19
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 112 AVFSPFKNRLKAGFKKWTSDNPGSISTEI------------HHNNNNNNNNNNNNNN--N 157
VF+ FK + K K + GS +++ HN NN N + +
Sbjct: 3 DVFNIFKKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSS 62
Query: 158 NNNNNNTNTDTATTPIPPP 176
+ N+N N + P
Sbjct: 63 STQNSNKNEENIVLEDFPK 81
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria chlorella
virus 1 (PBCV-1) proteins of around 250 residues in
length. The function of this family is unknown.
Length = 229
Score = 31.2 bits (71), Expect = 0.23
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 126 KKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATT 171
+ + +I+T + +NN NN N N N N + T
Sbjct: 49 DEKLATTVSNINTGVVNNNVNNINKTINTKNITINLTVPDKSTVED 94
Score = 29.7 bits (67), Expect = 0.92
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 140 IHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTT 181
+N N NNN NN N NT T +P +T
Sbjct: 53 ATTVSNINTGVVNNNVNNINKTINTKNITINLTVPDKSTVED 94
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/45 (28%), Positives = 13/45 (28%)
Query: 128 WTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTP 172
D N N NNN NN N N T T P
Sbjct: 43 LEEDYRDEKLATTVSNINTGVVNNNVNNINKTINTKNITINLTVP 87
Score = 26.6 bits (59), Expect = 8.2
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 136 ISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTT 183
E +N N NNN NN N NT T + P +T
Sbjct: 47 YRDEKLATTVSNINTGVVNNNVNNINKTINTKNITINLTVPDKSTVED 94
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 31.9 bits (72), Expect = 0.24
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 153 NNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
+NN+++ T A P+ P T T + G
Sbjct: 605 EEPGASNNSDDNGTPKAPRPVDEPRTPNPGNTMSEQLG 642
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 31.7 bits (71), Expect = 0.27
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 143 NNNNNNNNNNNNNNNNNNNN 162
N NNNN N +NNN N +NNN
Sbjct: 95 NGNNNNPNGDNNNPNGSNNN 114
Score = 31.7 bits (71), Expect = 0.27
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 144 NNNNNNNNNNNNNNNNNNNN 163
N NNNN N +NNN N +NNN
Sbjct: 95 NGNNNNPNGDNNNPNGSNNN 114
Score = 30.5 bits (68), Expect = 0.59
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTA 169
N++ N NNNN N +NNN N +N + A
Sbjct: 90 NDSYPNGNNNNPNGDNNNPNGSNNNIA 116
Score = 29.8 bits (66), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 142 HNNNNNNNNNNNNNNNNNNN 161
+ NNNN N +NNN N +NNN
Sbjct: 95 NGNNNNPNGDNNNPNGSNNN 114
Score = 28.2 bits (62), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTN 165
N N++ N NNNN N +NNN N
Sbjct: 88 NANDSYPNGNNNNPNGDNNNPN 109
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 31.2 bits (71), Expect = 0.31
Identities = 11/64 (17%), Positives = 17/64 (26%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTT 188
+ +++ + N + N DTA TP P T T
Sbjct: 180 APVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPT 239
Query: 189 TGVG 192
G
Sbjct: 240 DQAG 243
Score = 29.6 bits (67), Expect = 0.91
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 150 NNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTT 188
+ N+ + + +T TD ATTP P TT T + T
Sbjct: 154 LSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTP 192
Score = 29.6 bits (67), Expect = 0.96
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 136 ISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
I+T ++ + N+ + + + T P TT T + T T
Sbjct: 143 ITTMADQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVAT 196
Score = 28.8 bits (65), Expect = 2.1
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
+ + N+ + + + + T A T T + T T
Sbjct: 149 QSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATA 197
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 30.2 bits (67), Expect = 0.34
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 166 TDTATTPIPPPTTTTTTTTTTTTT 189
T T TT PPTTTTTTTTTTTT
Sbjct: 45 TTTTTTTTTPPTTTTTTTTTTTTI 68
Score = 28.3 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 156 NNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
+ + A TTTTTTT TTTT
Sbjct: 26 QGEGQYDAAVVEAAEGQSQTTTTTTTTTPPTTTT 59
Score = 27.9 bits (61), Expect = 2.1
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 166 TDTATTPIPPPTTTTTTTTTTTTT 189
T T TT PP TTTTTTTTTTT T
Sbjct: 46 TTTTTTTTPPTTTTTTTTTTTTIT 69
Score = 27.5 bits (60), Expect = 2.9
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T TT TTTTTTTTTTTTT
Sbjct: 64 TTTTITTTTTKTTTTTTTTTTTTTTT 89
Score = 27.5 bits (60), Expect = 3.2
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T TTP TTTTTTTTT TTT
Sbjct: 46 TTTTTTTTPPTTTTTTTTTTTTITTT 71
Score = 27.5 bits (60), Expect = 3.5
Identities = 17/27 (62%), Positives = 17/27 (62%)
Query: 163 NTNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T T P TTTTTTTT TTTT
Sbjct: 46 TTTTTTTTPPTTTTTTTTTTTTITTTT 72
Score = 27.5 bits (60), Expect = 3.7
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T T TTTTTTTTTTTTT
Sbjct: 62 TTTTTTITTTTTKTTTTTTTTTTTTT 87
Score = 27.1 bits (59), Expect = 4.0
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T TT I TT TTTTTTTTTT
Sbjct: 59 TTTTTTTTTITTTTTKTTTTTTTTTT 84
Score = 27.1 bits (59), Expect = 4.2
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 163 NTNTDTATTPIPPPTTTTTTTTTTTT 188
T T T TT TTTTTTTTTTTT
Sbjct: 64 TTTTITTTTTKTTTTTTTTTTTTTTT 89
Score = 27.1 bits (59), Expect = 4.3
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T TT TTTTTTTTTTTTT
Sbjct: 63 TTTTTITTTTTKTTTTTTTTTTTTTT 88
Score = 27.1 bits (59), Expect = 4.3
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T TT P TTTTTTTTTT TT
Sbjct: 45 TTTTTTTTTPPTTTTTTTTTTTTITT 70
Score = 27.1 bits (59), Expect = 4.8
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T TT T TTTTTTTTTTT
Sbjct: 60 TTTTTTTTITTTTTKTTTTTTTTTTT 85
Score = 26.7 bits (58), Expect = 5.6
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T T TTTTTTTTTTTT
Sbjct: 61 TTTTTTTITTTTTKTTTTTTTTTTTT 86
Score = 26.4 bits (57), Expect = 8.7
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T TT TTTTT TTTTTT
Sbjct: 55 PTTTTTTTTTTTTITTTTTKTTTTTT 80
Score = 26.0 bits (56), Expect = 9.3
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
T T T TT TTTTT TTTTTTT
Sbjct: 56 TTTTTTTTTTTTITTTTTKTTTTTTT 81
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 30.9 bits (69), Expect = 0.45
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 146 NNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGV 194
N + + N+ +N+N+ +N+T +TT T+T +T+++ ++T G +
Sbjct: 278 NGSASANSTSNSNSTSNSTTNSNSTTTTNSTTSTNSTSSSNSSTIAGCI 326
Score = 29.7 bits (66), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 166 TDTATTPIPPPTTTTTTTTTTTTT 189
T + +P TTT++TTTTTT
Sbjct: 668 TAPGSVTVPAAANTTTSSTTTTTT 691
Score = 29.7 bits (66), Expect = 1.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 158 NNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
N T + T P TTT++TTTTTTTT
Sbjct: 662 AAYQNCTAPGSVTVPAAANTTTSSTTTTTTTT 693
Score = 29.4 bits (65), Expect = 1.4
Identities = 14/52 (26%), Positives = 33/52 (63%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGV 194
N++++ N+ +N+N+ +NN+T + +TT T+++ +T++ T+G V
Sbjct: 107 GNSSSSANSTSNSNSTTSNNSTTSSNSTTTTSNSTSSSNSTSSGLTSGASVV 158
Score = 27.8 bits (61), Expect = 5.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
N + + N+ +N+N+ +N+ + T TT T +T+++ ++T G
Sbjct: 278 NGSASANSTSNSNSTSNSTTNSNSTTTTNSTTSTNSTSSSNSSTIAG 324
Score = 27.4 bits (60), Expect = 5.8
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGG 193
N + + N+ +N+N+ +N+ N+N+ T T TT+T +T+++ ++ + G
Sbjct: 278 NGSASANSTSNSNSTSNSTTNSNSTTTTN----STTSTNSTSSSNSSTIAG 324
Score = 26.7 bits (58), Expect = 9.9
Identities = 14/53 (26%), Positives = 34/53 (64%)
Query: 140 IHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVG 192
I + + + N++++ N+ +N+N+T ++ +TT TTT+ +T+++ +T G
Sbjct: 98 IQSGSGSASGNSSSSANSTSNSNSTTSNNSTTSSNSTTTTSNSTSSSNSTSSG 150
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 31.0 bits (70), Expect = 0.49
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 141 HHNNNN-------NNNNNNNNNNNNNNNNNTNTDTA-TTPIPPPTTTTTTTTTT 186
H N N +NNNNNN NN++ N N + + + + T +
Sbjct: 41 HLNFYNEKNEEKSSNNNNNNYNNSSINRKKDNKNYMKRSLLQLSPSLVTLNNSN 94
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 30.1 bits (67), Expect = 0.50
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTN 165
+ +N +NN N NNN NN NN N
Sbjct: 51 SLSNLSNNYNYNNNYNNYNNYN 72
Score = 29.7 bits (66), Expect = 0.54
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 140 IHHNNNNNNNNNNNNNNNNNNNNN 163
I +N +NN N NNN NN NN N
Sbjct: 49 ISSLSNLSNNYNYNNNYNNYNNYN 72
Score = 28.9 bits (64), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 139 EIHHNNNNNNNNNNNNNNNNNNNN 162
+I + +N +NN N NNN NN NN
Sbjct: 47 KIISSLSNLSNNYNYNNNYNNYNN 70
Score = 28.9 bits (64), Expect = 1.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 118 KNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIP 174
+ R + ++ S IS+ + +NN N NNN NN NN N + P+P
Sbjct: 31 RERSRDRTERERSREHKIISSLSNLSNNYNYNNNYNNYNNYNKHYYNINYIEQIPVP 87
Score = 28.5 bits (63), Expect = 1.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPP 176
N +NN N NNN NN NN N + IP P
Sbjct: 54 NLSNNYNYNNNYNNYNNYNKHYYNINYIEQIPVP 87
>gnl|CDD|212004 TIGR04281, peripla_PGF_1, putative ABC transporter
PGF-CTERM-modified substrate-binding protein. Members
of this archaeal protein family resemble periplasmic
substrate-binding proteins of ABC transporters and
appear in gene neighborhoods with permease and
ATP-binding cassette proteins. Notably, essentially all
members also have the PGF-CTERM putative protein-sorting
domain at the C-terminus, while more distant homologs
(excluded by the trusted cutoff) instead have what
appear to be lipoprotein signal peptides at the
N-terminus.
Length = 330
Score = 30.4 bits (69), Expect = 0.51
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 163 NTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGG 200
T TTTT+T T T G GV
Sbjct: 277 TEADTTYDDSTTDAEDGTTTTSTGTATDDSIPGFGVAA 314
Score = 30.0 bits (68), Expect = 0.75
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 163 NTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVG 199
T A T TT TTTT+TG G
Sbjct: 273 ETADTEADTTYDDSTTDAEDGTTTTSTGTATDDSIPG 309
Score = 28.1 bits (63), Expect = 2.8
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVG 199
T TTTT+T T G G
Sbjct: 276 DTEADTTYDDSTTDAEDGTTTTSTGTATDDSIPGFG 311
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 30.5 bits (69), Expect = 0.56
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 137 STEIHHNNNNNNNNNNNNNNNNNNNNN 163
S EI+ N NN +N NNN N NN
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKE 239
Score = 30.5 bits (69), Expect = 0.72
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTN 165
N N NN +N NNN N NN
Sbjct: 217 NINKEEKNNGSNVNNNGNKNNKE 239
Score = 28.9 bits (65), Expect = 2.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 140 IHHNNNNNNNNNNNNNNNNNNNNNTNTD 167
I+ NN +N NNN N NN D
Sbjct: 218 INKEEKNNGSNVNNNGNKNNKEEQKGND 245
Score = 28.5 bits (64), Expect = 2.5
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNN 163
T I+ NN +N NNN N NN
Sbjct: 209 TLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKG 243
Score = 28.1 bits (63), Expect = 3.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 145 NNNNNNNNNNNNNNNNNNNTNTD 167
N N NN +N NNN N N +
Sbjct: 217 NINKEEKNNGSNVNNNGNKNNKE 239
Score = 27.8 bits (62), Expect = 4.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 138 TEIHHNNNNNNNNNNNNNNNNNNNNNTN 165
T I N N NN +N NNN N N
Sbjct: 209 TLIKSKEININKEEKNNGSNVNNNGNKN 236
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 30.5 bits (69), Expect = 0.60
Identities = 8/61 (13%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTT 188
++ S ++ +++ + + ++ + + +NNN +N D +T ++T+ +
Sbjct: 34 STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKF---STIDSSTSDSNN 90
Query: 189 T 189
Sbjct: 91 I 91
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 30.0 bits (67), Expect = 0.85
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 149 NNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
N + +N+ N N +TT P + TT T T +
Sbjct: 57 NLTSPFGTGTDNSTNANGTESTTQASQPHSHETTITCTKSL 97
Score = 27.7 bits (61), Expect = 5.4
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 137 STEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGV 191
ST + +N + +N+ N T++ T P + TT T T + V
Sbjct: 46 STPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPHSHETTITCTKSLISV 100
Score = 26.9 bits (59), Expect = 9.8
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 154 NNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTT 188
N++N+ + T T T+ T T +T
Sbjct: 36 NSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNST 70
>gnl|CDD|224707 COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer
membrane].
Length = 230
Score = 29.5 bits (67), Expect = 0.92
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 21/86 (24%)
Query: 43 GWSSTEIFFETIKHIQNQIKASKENPALILM-----------DNHETHQSMEAI------ 85
G ST ++ I K + A +L+ I
Sbjct: 11 GPESTAPYYRKINEAVRA-KLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAK 69
Query: 86 --EYCRASGITLLTFPPHK-TDELQP 108
E A I L T HK D++Q
Sbjct: 70 KLERAGADFIVLPTNTMHKVADDIQK 95
>gnl|CDD|221195 pfam11737, DUF3300, Protein of unknown function (DUF3300). This
hypothetical bacterial gene product has a long
hydrophobic segment and is thus likely to be a membrane
protein.
Length = 230
Score = 29.6 bits (67), Expect = 0.92
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 140 IHHNNNNNNNNNNNNNNNNNNNNNTN 165
++HN+NN N NN+ ++ +
Sbjct: 204 VNHNHNNRINRNNDRVVSSGGQRWQH 229
Score = 28.4 bits (64), Expect = 1.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 142 HNNNNNNNNNNNNNNNNNNNNNTNTDTAT 170
++ N+N+NN N NN+ ++
Sbjct: 198 GGHDVVVNHNHNNRINRNNDRVVSSGGQR 226
Score = 28.4 bits (64), Expect = 2.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTN 165
H N+N+NN N NN+ ++
Sbjct: 200 HDVVVNHNHNNRINRNNDRVVSSGG 224
Score = 28.0 bits (63), Expect = 3.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTNT 166
++ N+N+NN N NN+ ++
Sbjct: 198 GGHDVVVNHNHNNRINRNNDRVVSSG 223
Score = 27.6 bits (62), Expect = 4.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTN 165
H++NN N NN+ ++ N
Sbjct: 206 HNHNNRINRNNDRVVSSGGQRWQHN 230
Score = 27.2 bits (61), Expect = 5.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTNTDT 168
H+ N+N+NN N NN+ ++
Sbjct: 199 GHDVVVNHNHNNRINRNNDRVVSSGGQR 226
Score = 26.9 bits (60), Expect = 6.9
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 140 IHHNNN-NNNNNNNNNNNNNNNNNN 163
+HNN N NN+ ++ +N
Sbjct: 206 HNHNNRINRNNDRVVSSGGQRWQHN 230
>gnl|CDD|117094 pfam08517, AXH, Ataxin-1 and HBP1 module (AXH). AXH is a
protein-protein and RNA binding motif found in Ataxin-1
(ATX1). ATX1 is responsible for the autosomal-dominant
neurodegenerative disorder Spinocerebellar ataxia type-1
(SCA1) in humans. The AXH module has also been
identified in the apparently unrelated transcription
factor HBP1 which is thought to be involved in the
architectural regulation of chromatin and in specific
gene expression.
Length = 115
Score = 28.5 bits (64), Expect = 1.00
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 83 EAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPF--KNRLKAGFKKWTSDNPGSISTEI 140
E IE + LTF P L ++ V PF K K W+S P S++ +
Sbjct: 43 ERIESVSGPSVVKLTFDPGTERGLLTVECQVEHPFFVKG------KGWSSCYP-SLTVVL 95
Query: 141 H 141
H
Sbjct: 96 H 96
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 29.7 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 117 FKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTN 165
FK R+ A FKK ++ N E +N NN N + N+ N
Sbjct: 108 FKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIE 156
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.8 bits (67), Expect = 1.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 NNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
N+ N ++ + P TTTTTTTTTTTT
Sbjct: 237 NSENIQRINSQPSKRPNNTTTTTTTTTTTTF 267
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 157 NNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
N+ N N+ + P TTTTTTTTTT
Sbjct: 237 NSENIQRINSQPSKRPNNTTTTTTTTTTTTFQP 269
Score = 28.3 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 150 NNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
N+ N N+ + +T TT TTTTTTTT T
Sbjct: 237 NSENIQRINSQPSKRPNNTTTT-----TTTTTTTTFQPRT 271
Score = 28.3 bits (63), Expect = 3.4
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 148 NNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTT 188
N+ N N+ + NT T TT TTTTTT T
Sbjct: 237 NSENIQRINSQPSKRPNNTTTTTT-----TTTTTTFQPRTR 272
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been detected
as spore proteins but not vegetative proteins in
Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 131 DNPGSISTEIHHNNNNNNNNNNNNNNNNNN---NNNTNTDTATTP 172
DN +++ + NN NN NN NNNN NN T +
Sbjct: 18 DNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNI 62
Score = 28.1 bits (63), Expect = 2.3
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNN---NNNNNNNNNNNNTNTDTA 169
+D + ++ NNNN NN N NN + A
Sbjct: 25 DNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNIERGEVA 68
Score = 27.7 bits (62), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTD 167
T++ + + +N+ N NN NN NN NNNN
Sbjct: 11 TNNAADDDNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLT 49
Score = 27.7 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 142 HNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIP 174
+N NN NN NNNN NN + I
Sbjct: 31 NNVNNRNNRNNNNGYGRLTKNNVTGENGYNNIE 63
Score = 27.3 bits (61), Expect = 3.8
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
+N N +N+ N NN NN NN N + + T G
Sbjct: 18 DNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNIERG 65
Score = 26.5 bits (59), Expect = 7.0
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGV 191
NN +++N N +N+ N N + T T G
Sbjct: 11 TNNAADDDNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGY 59
>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown function
(DUF912). This family consists of several
Nucleopolyhedrovirus proteins of unknown function.
Length = 101
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 142 HNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPP 176
N++N++NN N NN + N T
Sbjct: 23 LNDDNDDNNAPINANNTQSVYPKNDITNEDSNASK 57
Score = 26.5 bits (59), Expect = 4.6
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPP 175
+++N++NN N NN + + +
Sbjct: 23 LNDDNDDNNAPINANNTQSVYPKNDITNEDSNASK 57
>gnl|CDD|238870 cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Myxobacterial members of this subfamily have been
reported to be involved in adventurous gliding motility.
Length = 185
Score = 29.2 bits (66), Expect = 1.2
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 31/112 (27%)
Query: 28 LLGAPEGSLGFAN--KSGWSSTEIFFETIKHIQNQI-KASKENPALI-----------LM 73
L A + + +AN G + +I Q+ A P L+
Sbjct: 32 ALAAADPGIEYANLAVRGRRTAQIL-------AEQLPAALALRPDLVTLLAGGNDILRPG 84
Query: 74 DNHETHQS--MEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKA 123
+ +T+++ EA+ RA+G ++ F D AV PF+ R++A
Sbjct: 85 TDPDTYRADLEEAVRRLRAAGARVVVFTIP--------DPAVLEPFRRRVRA 128
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/47 (17%), Positives = 11/47 (23%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
N NN + + T T + T T T
Sbjct: 262 NPGFYNNALWISTTTTSKGKTLLITLYKTVTYYNTFETPAQLKPKTK 308
>gnl|CDD|132198 TIGR03154, sulfolob_CbsA, cytochrome b558/566, subunit A. Members
of this protein family are CbsA, one subunit of a highly
glycosylated, heterodimeric, mono-heme cytochrome
b558/566, found in Sulfolobus acidocaldarius and several
other members of the Sulfolobales, a branch of the
Crenarchaeota.
Length = 465
Score = 29.2 bits (65), Expect = 1.4
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 170 TTPIPPPTTTTTTTTTTTTT 189
TTP PPT+TTT+T+ +TTT
Sbjct: 414 TTPPTPPTSTTTSTSPSTTT 433
Score = 28.4 bits (63), Expect = 2.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 168 TATTPIPPPTTTTTTTTTTTTT 189
T P PP +TTT+T+ +TTT+
Sbjct: 413 VTTPPTPPTSTTTSTSPSTTTS 434
>gnl|CDD|220096 pfam09052, SipA, Salmonella invasion protein A. Salmonella
invasion protein A is an actin-binding protein that
contributes to host cytoskeletal rearrangements by
stimulating actin polymerisation and counteracting
F-actin destabilising proteins. Members of this family
possess an all-helical fold consisting of eight
alpha-helices arranged so that six long, amphipathic
helices form a compact fold that surrounds a final,
predominantly hydrophobic helix in the middle of the
molecule.
Length = 674
Score = 29.2 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 129 TSDNPGSIS--TEIHHNNNNNNNNNNNNNNNNNNNNNTNTD 167
T G S EIH++ N +N+N + +N +N +T
Sbjct: 287 TPGGNGKTSQPVEIHYHINIHNDNRSYDNRVFDNRGDTYLG 327
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1
and 2 and related proteins; solute-binding domain.
SMCT1 is a high-affinity transporter of various
monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. Human SMCT1 (hSMCT1, also
called AIT) is encoded by the tumor suppressor gene
SLC5A8. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. It also mediates
iodide transport from thyrocyte into the colloid lumen
in thyroid gland and, through transporting L-lactate and
ketone bodies, helps maintain the energy status and the
function of neurons. SMCT2 is a low-affinity transporter
for short-chain fatty acids, lactate, pyruvate, and
nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2
is expressed in the kidney, small intestine, skeletal
muscle, and retina. In the kidney, SMCT2 may initiate
lactate absorption in the early parts of the tubule,
SMCT1 in the latter parts of the tubule. In the retina,
SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner. This subgroup belongs to the solute carrier 5
(SLC5) transporter family.
Length = 536
Score = 28.9 bits (65), Expect = 1.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 162 NNTNTDTATTPIPPPTTTTTTTTTTTTTGV 191
N TNT++ TT TT T ++ +
Sbjct: 475 NFTNTESNTTTTTEMPTTIFPTQPSSRPPL 504
>gnl|CDD|236016 PRK07424, PRK07424, bifunctional sterol desaturase/short chain
dehydrogenase; Validated.
Length = 406
Score = 28.9 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 42 SGWSSTEIFFETIKHIQNQIKASKE----------NPAL 70
S W E+FF T+K N+ KA+KE NPA
Sbjct: 276 SAWRLMELFFTTVK--TNRDKATKEVWVNTSEAEVNPAF 312
>gnl|CDD|220387 pfam09763, Sec3, Exocyst complex component Sec3. This entry is the
conserved middle and C-terminus of the Sec3 protein.
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1
(glycine transporter protein 1). Sec3 is the exocyst
component that is closest to the plasma membrane docking
site and it serves as a spatial landmark in the plasma
membrane for incoming secretory vesicles. Sec3 is
recruited to the sites of polarised membrane growth
through its interaction with Rho1p, a small GTP-binding
protein.
Length = 691
Score = 28.8 bits (65), Expect = 1.9
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 32/134 (23%)
Query: 5 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIF-----------FET 53
+++ +P V FP VF K E L A + G + FE+
Sbjct: 465 VKSRKGVLPFVRNFP-VFAK------RVEDMLSSAERRGLDVRTLVDKAYEKLIEAVFES 517
Query: 54 IKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAV 113
++ I + NP + E + + L+ H + L L+ V
Sbjct: 518 LERI------APLNPNKSDAADE----DKEKLNRH----VLLIENMNHFLETLSVLNNGV 563
Query: 114 FSPFKNRLKAGFKK 127
++ K F +
Sbjct: 564 LESLRDEAKQIFDE 577
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 26.6 bits (59), Expect = 1.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 140 IHHNNNNNNNNNNNNNNNNNNNNNT 164
+ NN + N +N+++N +++NNN
Sbjct: 27 LLLNNWPSTNASNSSSNTSSSNNNN 51
Score = 25.8 bits (57), Expect = 3.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTN 165
NN + N +N+++N +++NN N
Sbjct: 29 LNNWPSTNASNSSSNTSSSNNNN 51
Score = 25.4 bits (56), Expect = 4.8
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNT 166
NN + N +N+++N +++N N
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNNN 51
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate
reductase [General function prediction only].
Length = 280
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 53 TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITL 95
++H++ + +K PA+ ++ H + E + +C+ GI +
Sbjct: 144 GVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAV 186
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 28.4 bits (63), Expect = 2.7
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 131 DNPGSISTEIHHNNNNNNNNNNN-------NNNNNNNNNNTNTDTATTPIP 174
DN S + N N +N+ + NN N N NN N+D P
Sbjct: 444 DNERDQSNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNKNSDIPKHPER 494
>gnl|CDD|236782 PRK10871, nlpD, lipoprotein NlpD; Provisional.
Length = 319
Score = 28.3 bits (63), Expect = 2.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 161 NNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGG 196
NN T T P+ PT +TT T ++T+ +
Sbjct: 164 NNKPAATTVTAPVTAPTASTTEPTASSTSTSTPIST 199
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 28.3 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 13 PPVFVFPRVFMK-DEFLLGAPEGSLGF 38
PPV + +FM D + L +PE SLGF
Sbjct: 75 PPVLLQHGLFMAGDAWFLNSPEQSLGF 101
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 28.6 bits (63), Expect = 2.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 161 NNNTNTDTATTPIPPPTTTTTTTTTTTTTGVG 192
+ ++ ATTP PPP+++++++ + +T G
Sbjct: 1229 SAASSPPAATTPTPPPSSSSSSSAQSISTSPG 1260
>gnl|CDD|220959 pfam11059, DUF2860, Protein of unknown function (DUF2860). This
bacterial family of proteins has no known function.
Length = 297
Score = 28.0 bits (63), Expect = 3.2
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 134 GSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIP 174
G IS ++ +N N +++ ++ N++ ++++ P P
Sbjct: 4 GEISLGAGVVSSKSNLNTDDSATTSSLNSSGESESSALPAP 44
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under
the control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 28.2 bits (63), Expect = 3.3
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 162 NNTNTDTATTPIPPPTTTTTTTTTTTTTGV 191
N TNT++ TT T T + +
Sbjct: 475 NFTNTESNTTTTTEMPFTIFPTQPSPRPPL 504
>gnl|CDD|146097 pfam03290, Peptidase_C57, Vaccinia virus I7 processing peptidase.
Length = 423
Score = 28.1 bits (63), Expect = 3.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 131 DNPGSISTEIHHNNN----NNNNNNNNNNNNNNNNNNTNTD 167
D+ G+I E HH +N + ++ N N + +N +N N D
Sbjct: 260 DSGGNIPNEFHHYDNFYFYSFSDGFNTNKKSTSNLDNENCD 300
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes, Sporulation
and germination].
Length = 158
Score = 27.3 bits (61), Expect = 3.6
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDTAT 170
N + NNN N N+ N+ D A
Sbjct: 30 ETNVMSKNNNGMNTTNDTNDGDLYDVAD 57
Score = 26.2 bits (58), Expect = 9.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTN 165
NN N + NNN N N+TN
Sbjct: 26 NNVGETNVMSKNNNGMNTTNDTN 48
Score = 26.2 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNTDT 168
NNN N + NNN N N D
Sbjct: 25 NNNVGETNVMSKNNNGMNTTNDTNDG 50
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 28.2 bits (63), Expect = 3.7
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNT 166
S NP H +N N + N+
Sbjct: 29 DSSNPYGNYQANHQDNYGGFRPGYGNYSGGYGGFGMNS 66
>gnl|CDD|185760 cd08977, SusD, starch binding outer membrane protein SusD.
SusD-like proteins from Bacteroidetes, members of the
human distal gut microbiota, are part of the starch
utilization system (Sus). Sus is one of the large
clusters of glycosyl hydrolases, called polysaccharide
utilization loci (PULs), which play an important role in
polysaccharide recognition and uptake, and it is needed
for growth on amylose, amylopectin, pullulan, and
maltooligosaccharides. SusD, together with SusC, a
predicted beta-barrel porin, forms the minimum
outer-membrane starch-binding complex. The adult human
distal gut microbiota is essential for digestion of a
large variety of dietary polysaccharides, for which
humans lack the necessary glycosyl hydrolases.
Length = 359
Score = 27.8 bits (62), Expect = 3.8
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 112 AVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNN 161
A FK + + + S ++ +N+N + NNNN
Sbjct: 203 AAEKSFKGGVTLLTNLFGENAANSKEDIFEIYYADSGDNSNPLGSLNNNN 252
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 27.8 bits (62), Expect = 3.9
Identities = 8/45 (17%), Positives = 26/45 (57%)
Query: 149 NNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGG 193
+ NNN++ + + + + + ++++++++T T++G GG
Sbjct: 269 SRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSSSSSTRTSSGFGG 313
>gnl|CDD|218869 pfam06043, Reo_P9, Reovirus P9-like family.
Length = 333
Score = 27.9 bits (62), Expect = 3.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 138 TEIHHNNNNNNNNNNNNNNNNNNNNNTNT 166
EI NN NN N N NN+N N N+
Sbjct: 15 YEITTTNNQNNFNTNTQNNSNTENRNSTK 43
Score = 27.1 bits (60), Expect = 6.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 149 NNNNNNNNNNNNNNNTNTDTATTPIP 174
NN NN N N NN+NT +T P
Sbjct: 21 NNQNNFNTNTQNNSNTENRNSTKRKP 46
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 28.0 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 148 NNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTT 182
NN N+NN NNN+ N + I TTT T
Sbjct: 304 NNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWT 338
Score = 27.6 bits (61), Expect = 5.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 146 NNNNNNNNNNNNNNNNNNT 164
NN N+NN NNN+ NN
Sbjct: 304 NNKRENSNNGNNNSTNNVC 322
Score = 27.6 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 142 HNNNNNNNNNNNNNNNNNNNNNTNTDT---ATTPIPPPT 177
+NN N+NN NNN+ NN +++ TTP P+
Sbjct: 303 YNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPS 341
Score = 27.2 bits (60), Expect = 6.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 152 NNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTT 186
NN N+NN NN +T+ TTT T
Sbjct: 304 NNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWT 338
>gnl|CDD|213986 cd07431, PHP_PolIIIA, Polymerase and Histidinol Phosphatase
domain of alpha-subunit of bacterial polymerase III.
PolIIIAs that contain an N-terminal PHP domain have
been classified into four basic groups based on genome
composition, phylogenetic, and domain structural
analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. DNA
polymerase III holoenzyme is one of the five
eubacterial DNA polymerases that is responsible for the
replication of the DNA duplex. The alpha subunit of DNA
polymerase III core enzyme catalyzes the reaction for
polymerizing both DNA strands. The PolIIIA PHP domain
has four conserved sequence motifs and contains an
invariant histidine that is involved in metal ion
coordination, and like other PHP structures, exhibits a
distorted (beta/alpha) 7 barrel and coordinates up to 3
metals. Initially, it was proposed that PHP region
might be involved in pyrophosphate hydrolysis, but such
activity has not been found. It has been shown that the
PHP domain of PolIIIA has a trinuclear metal complex
and is capable of proofreading activity.
Length = 179
Score = 27.2 bits (61), Expect = 4.7
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 61 IKASKEN--PALILMDNHETHQSMEAIEYCRASGI 93
+ +KE AL L D + + ++ + C+ +GI
Sbjct: 22 VARAKELGYSALALTDRNVLYGAVRFYKACKKAGI 56
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 27.7 bits (61), Expect = 5.0
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 126 KKWTSDNPGSISTEIHHNNNNNNNNNNNNNN------NNNNNNNTNTD 167
K W D +I E +H N + N+ ++NNN D
Sbjct: 2 KDWPIDEDINIYEEKNHKANKGGSGKFEMNDKKLDEEERSHNNNAGED 49
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 27.6 bits (61), Expect = 5.0
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 102 KTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNN 161
K D +PL + AG++ + S NN+NNNN++N+N
Sbjct: 161 KADNSKPLAALQEKRSSSISPAGYQLEVESSSSS---------KINNSNNNNHSNSNLMT 211
Query: 162 NNTNTD 167
N D
Sbjct: 212 PTPNKD 217
>gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1). This
family consists of the yeast mitochondrial ribosomal
proteins VAR1. Mitochondria possess their own ribosomes
responsible for the synthesis of a small number of
proteins encoded by the mitochondrial genome. In yeast
the two ribosomal RNAs and a single ribosomal protein,
VAR1, are products of mitochondrial genes, and the
remaining approximately 80 ribosomal proteins are
encoded in the nucleus. VAR1 along with 15S rRNA are
necessary for the formation of mature 37S subunits.
Length = 350
Score = 27.6 bits (61), Expect = 5.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTN 165
NNNNN NN NN+NNN N N
Sbjct: 234 NNNNNIKYNNMINNSNNNLNINN 256
Score = 27.2 bits (60), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 136 ISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDT 168
I+ ++NN NN NN+NNN N NN N
Sbjct: 230 INNINNNNNIKYNNMINNSNNNLNINNIYNNLN 262
Score = 27.2 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTN 165
NN+NNN N NN NN N N +
Sbjct: 246 NNSNNNLNINNIYNNLNINKISM 268
>gnl|CDD|214702 smart00507, HNHc, HNH nucleases.
Length = 52
Score = 25.1 bits (55), Expect = 5.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 131 DNPGSISTEIHHNNNNNNNNNNNNNN 156
P S E+ H ++ N++ +N
Sbjct: 17 GKPASEGLEVDHIIPLSDGGNDDLDN 42
>gnl|CDD|213640 TIGR01601, PYST-C1, Plasmodium yoelii subtelomeric domain PYST-C1.
This model represents the N-terminal domain of a
paralogous family of Plasmodium yoelii genes
preferentially located in the subtelomeric regions of
the chromosomes. There are no obvious homologs to these
genes in any other organism. The C-terminal portions of
the genes which contain this domain are divergent and
some contain other yoelii-specific paralogous domains
such as PYST-C2 (TIGR01604).
Length = 82
Score = 26.1 bits (57), Expect = 5.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 137 STEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTP 172
EI+ +N N+ + NNNN + D P
Sbjct: 39 IKEINRSNEKNDIETKSEIQLNNNNPKDDIDDKDNP 74
>gnl|CDD|224790 COG1878, COG1878, Kynurenine formamidase [Amino acid transport and
metabolism].
Length = 218
Score = 26.9 bits (60), Expect = 5.9
Identities = 12/50 (24%), Positives = 15/50 (30%)
Query: 64 SKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAV 113
SK H S+EA EY G+ + TD D
Sbjct: 117 SKRWGDEPAFQYHFPGISIEAAEYLIERGVKAVGIDTPSTDPGLSEDFPA 166
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 27.0 bits (60), Expect = 5.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 164 TNTDTATTPIPPPTTTTTTTTTTTTT 189
+T TT P T T TTT +T
Sbjct: 104 VSTTVTTTTSPSETDTEEATTTVSTE 129
>gnl|CDD|177645 PHA03417, PHA03417, E4 protein; Provisional.
Length = 118
Score = 26.6 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 152 NNNNNNNNNNNNTNTDTAT---TPIPPPTTTTTTTTTTTTTGV 191
N++ + +N N+ AT TP P T TTT++ T T
Sbjct: 63 NDHEDLHNLQEKPNSPLATLCVTPTLDPLTVETTTSSITITAS 105
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 27.3 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 167 DTATTPIPPPTTTTTTTTTTTTTGVGGVGG 196
D+ ++P + +TTTTT ++G GG
Sbjct: 272 DSTSSPSTTRPSGSTTTTTPASSGPSAPGG 301
Score = 27.0 bits (59), Expect = 8.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 169 ATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGG 200
+T P T + +TTTTT G G G
Sbjct: 272 DSTSSPSTTRPSGSTTTTTPASSGPSAPGGPG 303
>gnl|CDD|227159 COG4822, CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase
[Coenzyme metabolism].
Length = 265
Score = 27.1 bits (60), Expect = 6.5
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 48 EIFFETIKHIQNQIKASKENPALILMDNHETHQSMEA 84
EI E IK QI ++ L+LM + H S A
Sbjct: 121 EICVEAIKD---QIPPLNKDEILVLMGHGTDHHSNAA 154
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 27.0 bits (61), Expect = 6.8
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 69 ALILMDNHETHQSMEAI-EYCRASGITLLTFPP 100
L+L E + EA+ E R IT+L P
Sbjct: 161 TLVLAPP-EVLRDPEALAELLREHRITVLHLVP 192
>gnl|CDD|227121 COG4782, COG4782, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 377
Score = 27.0 bits (60), Expect = 6.9
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 91 SGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGS 135
S L F + L DV V P K+ K G +W P
Sbjct: 38 SEDPALLFGGERAAMLSYADVTVSIPPKSVRKVGAVEWPKRLPVP 82
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 27.2 bits (61), Expect = 7.0
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 4 IIRASGEAIPPVFVFPRVFMKDEFL---LGAPEGSLGFANKSGWSSTEIFFETIKH---- 56
+ SG FV R F E L LG L + + W FFETIK
Sbjct: 235 LAAGSGGLCGSTFV-DRAFE--ELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGG 291
Query: 57 IQNQIKASKENPALILMDNHE 77
N + + E
Sbjct: 292 TDNDTNIVLPGSLALSKKDPE 312
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 27.2 bits (61), Expect = 7.0
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 148 NNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTT 181
+NNNNN N N N P P P
Sbjct: 21 WQSNNNNNTPNPPNPPPNPPPPPPPPPTPEDYHD 54
Score = 27.2 bits (61), Expect = 7.8
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 146 NNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTT 179
+NNNNN N N N P P
Sbjct: 21 WQSNNNNNTPNPPNPPPNPPPPPPPPPTPEDYHD 54
Score = 26.8 bits (60), Expect = 8.8
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 144 NNNNNNNNNNNNNNNNNNNNTNTDTATTP 172
+NNNNN N N N TP
Sbjct: 21 WQSNNNNNTPNPPNPPPNPPPPPPPPPTP 49
Score = 26.8 bits (60), Expect = 9.3
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 147 NNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTT 180
+NNNNN N N P P
Sbjct: 21 WQSNNNNNTPNPPNPPPNPPPPPPPPPTPEDYHD 54
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 27.1 bits (60), Expect = 7.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 129 TSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIP 174
++N I + + + NNNN +NN N + N ++T+ P P
Sbjct: 42 PNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDP 87
>gnl|CDD|151365 pfam10918, DUF2718, Protein of unknown function (DUF2718). This
viral family of proteins has no known function.
Length = 140
Score = 26.5 bits (58), Expect = 7.3
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 142 HNNNNNNNNNNNNNNN 157
+ N N N
Sbjct: 104 YYEYCYPYPNKNAKNQ 119
>gnl|CDD|225872 COG3335, COG3335, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 132
Score = 26.2 bits (57), Expect = 8.4
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 46 STEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAI-EYCRASGITLLTFPPHKTD 104
+ + F ++ + P ++++DN + +A+ E +GI LL PP+ D
Sbjct: 24 NKKFFIGFLRIYL---WLVLKKPIVLILDNVASFHRKKALKEDAEENGIHLLFLPPYSPD 80
>gnl|CDD|185274 PRK15376, PRK15376, pathogenicity island 1 effector protein SipA;
Provisional.
Length = 670
Score = 26.9 bits (59), Expect = 8.5
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 137 STEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTA 169
T I+ N N +++N++ +N+ + NN+ ++ D +
Sbjct: 273 PTGINININIDSSNHSVDNSKHINNSRSHVDNS 305
>gnl|CDD|240387 PTZ00371, PTZ00371, aspartyl aminopeptidase; Provisional.
Length = 465
Score = 26.9 bits (60), Expect = 8.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 136 ISTEIHHNNNNNNNNNNNNNNNN 158
ISTE++ N +N+N+NNN++
Sbjct: 182 ISTEVYEQLNGKQDNDNSNNNHS 204
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 26.6 bits (60), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 67 NPALILMD------NH-ETHQSMEAIEYCRASGITLL 96
+P L+L+D N ET + E I R GIT+L
Sbjct: 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,135,216
Number of extensions: 909321
Number of successful extensions: 4152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3033
Number of HSP's successfully gapped: 422
Length of query: 201
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 109
Effective length of database: 6,857,034
Effective search space: 747416706
Effective search space used: 747416706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.5 bits)