RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16521
(201 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.006
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 52 ETIKHIQNQIK--ASKENPALILMDNHETHQSME 83
+ +K +Q +K A PAL + +ME
Sbjct: 20 QALKKLQASLKLYADDSAPALAI------KATME 47
Score = 27.6 bits (60), Expect = 2.1
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 118 KNRLK---AGFKKWTSDN-PG-SISTEI 140
K LK A K + D+ P +I +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription,
epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A
3u86_A 3u88_A*
Length = 550
Score = 31.0 bits (69), Expect = 0.24
Identities = 3/47 (6%), Positives = 7/47 (14%)
Query: 132 NPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTT 178
+ + T ++ I T
Sbjct: 474 TAQVPAPTASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLT 520
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 29.6 bits (67), Expect = 0.73
Identities = 7/59 (11%), Positives = 12/59 (20%)
Query: 133 PGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGV 191
S + + N + PI T T+ + V
Sbjct: 348 VNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIV 406
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.77
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 12 IPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSST-EIFFETIKHIQNQIKASKENP 68
+P F ++++F PE + GFA ++ E+ + + ++ + ++ SK
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 28.7 bits (65), Expect = 1.4
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 86 EYCRASGITLLTFPPHKTDELQPLDV---AVFSPFKNRLKA 123
+ C +GI + + L P + F+ F N +
Sbjct: 112 KVCEENGIEFKAYEDY---LLTPKSLFHHRNFTSFYNEVSK 149
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 27.7 bits (62), Expect = 2.2
Identities = 3/37 (8%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 67 NPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKT 103
P +++ ++ +G+ + T
Sbjct: 59 RPDILIGTEEMGPP--PVLKQLEGAGVRVETLSAKPD 93
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex
(hydrolase- immunoglobulin) complex; HET: NAG BMA MAN;
2.20A {Influenza a virus} SCOP: b.68.1.1
Length = 470
Score = 28.1 bits (62), Expect = 2.5
Identities = 10/41 (24%), Positives = 12/41 (29%)
Query: 135 SISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPP 175
S S N + NN N N +NTN
Sbjct: 44 SRSQPEATNASQTIINNYYNETNITQISNTNIQVEERASRE 84
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A
{Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E
1n4a_A* 1n4d_A
Length = 245
Score = 27.6 bits (62), Expect = 2.7
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 67 NPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDEL 106
P L++ + ++ + GI ++ +++
Sbjct: 57 KPDLVIAWRGGNAE--RQVDQLASLGIKVMWVDATSIEQI 94
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Length = 368
Score = 27.5 bits (60), Expect = 3.0
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 122 KAGFKKWTSDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNT 166
KAG GS E N+ N N N++ + + N +T
Sbjct: 19 KAGMADQERRTFGSYKIEELTIKNDQPNRNTNSSTSQSTENRLST 63
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 26.7 bits (60), Expect = 4.8
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 67 NPALILMD------NH-ETHQSMEAIEYCRASGITLL 96
NP +I+MD H + +A GIT L
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFL 207
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 26.9 bits (59), Expect = 4.8
Identities = 8/75 (10%), Positives = 24/75 (32%)
Query: 80 QSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSISTE 139
+S + G+ + H+ + + +++ K+ SD + E
Sbjct: 25 ESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGAE 84
Query: 140 IHHNNNNNNNNNNNN 154
I++ + +
Sbjct: 85 IYYTPDVLDKLEKKR 99
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha
beta protein, rigid helical backbon substrate-free, heme
transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Length = 255
Score = 26.8 bits (60), Expect = 5.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 67 NPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDE 105
P ++L+ + +SG+ ++T P T E
Sbjct: 59 KPTMLLVSELAQPS--LVLTQIASSGVNVVTVPGQTTPE 95
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 25.9 bits (57), Expect = 5.6
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 157 NNNNNNNTNTDTATTPIPPPT--TTTTTTTTTTTTG 190
N + + T TT + P T + ++G
Sbjct: 80 RGPNLTSPASITFTTGLEAPRDLEAKEVTPSGPSSG 115
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 26.8 bits (58), Expect = 5.7
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 130 SDNPGSISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
+ PG S + + ++ ++ N + + N T + + T+
Sbjct: 16 AGAPGPTSVPLVKAHRSSVSDYVNYDIIVRHYNYTGKLNISA--DKENSIKLTSVVFILI 73
Query: 190 GVGGVGG 196
+
Sbjct: 74 CCFIILE 80
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 26.4 bits (56), Expect = 7.5
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 167 DTATTPIPPPTTTTTTTTTTTTTGVGGVGGGVGGL 201
D+A P + VGGG GG+
Sbjct: 35 DSALVSYPVAAAAPLGRLPAGNYRIAIVGGGAGGI 69
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 26.3 bits (59), Expect = 8.8
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 76 HETHQSMEAI-EYCRASGITLLTFPP 100
+ + + E + SG+ + T P
Sbjct: 217 KDAVNKPKVLFEELKKSGLNVWTSTP 242
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 26.3 bits (57), Expect = 9.1
Identities = 5/52 (9%), Positives = 17/52 (32%)
Query: 145 NNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTGVGGVGG 196
++++ + + +++ N T +T + + V G
Sbjct: 4 DDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFG 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,042,182
Number of extensions: 167136
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 107
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)