RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16521
(201 letters)
>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 533
Score = 28.7 bits (64), Expect = 0.45
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 135 SISTEIHHNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTT 185
S S ++ N N +N N+ N DT + T + T
Sbjct: 461 SFSDDLSKNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLT 511
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 28.6 bits (64), Expect = 0.47
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 142 HNNNNNNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTT 189
H+ N +N ++ N N N + + + T +T T
Sbjct: 12 HSTQNMVSNGSSLNYFNINYFKDAASSGASRLDSDRIIQITRGDSTIT 59
Score = 25.9 bits (57), Expect = 3.8
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 137 STEIHHNNNNNNNNNNNNNNNNNNNN---NTNTDTATTPIPPPTTTTTTTTTTTTT 189
S + ++ N +N ++ N N N + + A+ T +T T+
Sbjct: 5 SRQNVGTHSTQNMVSNGSSLNYFNINYFKDAASSGASRLDSDRIIQITRGDSTITS 60
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 26.8 bits (58), Expect = 1.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 137 STEIHHNNNNNNNNNNNNNNNNNNNNNTN 165
S + H + + N +NN N +N
Sbjct: 304 SYDFHGDTDAGGPNVPVHNNGNLECFASN 332
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
virus type 1 [TaxId: 11676]}
Length = 316
Score = 26.6 bits (59), Expect = 2.4
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 143 NNNNNNNNNNNNNNNNNNNNNTNT 166
N+ N+ + +NN ++T T
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDTIT 240
Score = 25.8 bits (57), Expect = 3.8
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 147 NNNNNNNNNNNNNNNNNTNTDTATTPI 173
N+ N+ + +NN +DT T P
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDTITLPC 243
>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
{Thermoanaerobacterium [TaxId: 28895]}
Length = 406
Score = 26.2 bits (56), Expect = 3.6
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 19 PRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPAL 70
P ++ E + G+ N++ +S I+ K NPA+
Sbjct: 356 PAIYYGTEQYM---TGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKSNPAI 404
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 382
Score = 25.8 bits (55), Expect = 3.9
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 19 PRVFMKDEFLLGAPEGSLGFANKSG--WSSTEIFFETIKHIQNQIKASKENPAL 70
P ++ DE L +G + W T+ + Q I+ + + AL
Sbjct: 329 PCIYYGDEVGL---DGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAAL 379
>d1hwma_ d.165.1.1 (A:) Ebulin A-chain {Sambucus ebulus [TaxId:
28503]}
Length = 251
Score = 25.3 bits (55), Expect = 4.7
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 112 AVFSPFKNRLKAGFKKWTSDNP-----------GSISTEIHHNNNNNNNNNNNNNNNNNN 160
A F + ++ ++ TS P S+S E+ + +N + + N +
Sbjct: 165 ARFRYIEQEVRRSLQQLTSFTPNALMLSMENNWSSMSLEVQLSGDNVSPFSGTVQLQNYD 224
Query: 161 NNNTNTDTATTPIP 174
+ D
Sbjct: 225 HTPRLVDNFEELYK 238
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 25.6 bits (56), Expect = 4.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 142 HNNNNNNNNNNNNNNNNNN 160
H + + N+ + N N
Sbjct: 12 HETSLSAAGNSIIHYTNIN 30
Score = 25.2 bits (55), Expect = 6.1
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTN 165
+ + + N+ + TN
Sbjct: 4 VSTQKTGAHETSLSAAGNSIIHYTN 28
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 25.5 bits (56), Expect = 5.2
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 141 HHNNNNNNNNNNNNNNNNNNNNNTN 165
+ + N+N + N T
Sbjct: 4 VSSQKVGAHENSNRAYGGSTINYTT 28
Score = 24.8 bits (54), Expect = 9.0
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 142 HNNNNNNNNNNNNNNNNNN 160
H N+N + N N
Sbjct: 12 HENSNRAYGGSTINYTTIN 30
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 25.2 bits (55), Expect = 5.7
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 165 NTDTATTPIPPPTTTTTTTTTTTTTGVG 192
++DT + T T + T G
Sbjct: 123 DSDTPQSGYDVTLRGDTATNWSKTNTYG 150
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 25.2 bits (55), Expect = 5.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 147 NNNNNNNNNNNNNNNNNTNTDTATTPIPPPTTTTTTTTTTTTTG 190
N N N ++ + T P+PP T + TT+TT+
Sbjct: 147 NPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSI 190
>d1hn6a_ g.61.1.1 (A:) Apical membrane antigen 1 {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 110
Score = 24.1 bits (52), Expect = 7.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 136 ISTEIHHNNNNNNNNNNNNNNNN 158
I EI + N+N++ N
Sbjct: 15 IMKEIERESKRIKLNDNDDEGNK 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 740,940
Number of extensions: 33245
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 54
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)