Query psy16523
Match_columns 85
No_of_seqs 107 out of 425
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:28:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u95_A Glycoside hydrolase, fa 17.4 49 0.0017 25.6 1.5 14 13-26 153-166 (477)
2 1up7_A 6-phospho-beta-glucosid 14.9 63 0.0022 24.6 1.5 15 12-26 134-148 (417)
3 2vqp_A Matrix protein; viral p 13.7 1.2E+02 0.0041 22.2 2.6 39 13-51 202-241 (257)
4 3fef_A Putative glucosidase LP 9.1 1.3E+02 0.0043 23.3 1.5 14 13-26 140-153 (450)
5 1s6y_A 6-phospho-beta-glucosid 8.3 1.4E+02 0.0049 22.8 1.5 13 14-26 147-159 (450)
6 1u8x_X Maltose-6'-phosphate gl 7.4 1.6E+02 0.0056 22.7 1.5 12 14-25 166-177 (472)
7 2kzb_A Autophagy-related prote 6.4 2.5E+02 0.0087 18.1 1.8 27 10-37 23-56 (118)
8 2lyd_A Decapping protein 1; DC 6.2 4.7E+02 0.016 16.8 3.1 35 9-43 68-102 (134)
9 2v31_A Ubiquitin-activating en 6.1 2.4E+02 0.0083 17.7 1.6 16 29-44 61-77 (112)
10 1obb_A Maltase, alpha-glucosid 6.1 2.1E+02 0.0071 22.3 1.5 14 13-26 146-159 (480)
No 1
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=17.43 E-value=49 Score=25.60 Aligned_cols=14 Identities=7% Similarity=0.142 Sum_probs=11.8
Q ss_pred EEEEeccChhhhhc
Q psy16523 13 IFIYNVTNADEFLS 26 (85)
Q Consensus 13 ~y~FNvTN~eevl~ 26 (85)
-++.|+|||.+++.
T Consensus 153 A~~in~tNP~~i~t 166 (477)
T 3u95_A 153 AYLMQTANPVFEIT 166 (477)
T ss_dssp CEEEECSSCHHHHH
T ss_pred eEEEEecChHHHHH
Confidence 47999999998874
No 2
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=14.91 E-value=63 Score=24.56 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.3
Q ss_pred EEEEEeccChhhhhc
Q psy16523 12 RIFIYNVTNADEFLS 26 (85)
Q Consensus 12 ~~y~FNvTN~eevl~ 26 (85)
+-++.|+|||.+++.
T Consensus 134 ~A~lin~TNPvdi~t 148 (417)
T 1up7_A 134 NATIVNFTNPSGHIT 148 (417)
T ss_dssp CCEEEECSSSHHHHH
T ss_pred CEEEEEeCChHHHHH
Confidence 457899999999873
No 3
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus} PDB: 2ykd_A
Probab=13.69 E-value=1.2e+02 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=26.7
Q ss_pred EEEEeccChhhhhcCCCC-CceeEEeCCeEEEeEEEeeee
Q psy16523 13 IFIYNVTNADEFLSVPGT-KPVLDEIGPYVYVLLTSFVAN 51 (85)
Q Consensus 13 ~y~FNvTN~eevl~g~g~-kP~v~EvGPY~Y~e~~~k~ni 51 (85)
+-+-++||+.....--|+ .-.+.|+|||+=.|...++--
T Consensus 202 ilvit~~~~KG~FK~l~agsQ~iveLG~Y~~~eSi~~v~~ 241 (257)
T 2vqp_A 202 LLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTT 241 (257)
T ss_dssp EEEEECCCSSGGGTTSCTTCEEEEECGGGCTTSCHHHHHH
T ss_pred EEEEEecCCcchHhhcCCCcEEEEeccchhhHhHHHHHHh
Confidence 457789999877641222 346899999987776665443
No 4
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=9.15 E-value=1.3e+02 Score=23.33 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=11.9
Q ss_pred EEEEeccChhhhhc
Q psy16523 13 IFIYNVTNADEFLS 26 (85)
Q Consensus 13 ~y~FNvTN~eevl~ 26 (85)
-++.|+|||.+++.
T Consensus 140 a~~i~~tNPvdi~t 153 (450)
T 3fef_A 140 SWVINYTNPMSVCT 153 (450)
T ss_dssp SEEEECCSSHHHHH
T ss_pred eEEEEecCchHHHH
Confidence 47889999999885
No 5
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=8.30 E-value=1.4e+02 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=10.8
Q ss_pred EEEeccChhhhhc
Q psy16523 14 FIYNVTNADEFLS 26 (85)
Q Consensus 14 y~FNvTN~eevl~ 26 (85)
++.|+|||.+++.
T Consensus 147 ~ii~~tNPvdivT 159 (450)
T 1s6y_A 147 WLINFTNPAGMVT 159 (450)
T ss_dssp EEEECSSSHHHHH
T ss_pred EEEEeCCcHHHHH
Confidence 6779999998874
No 6
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=7.42 E-value=1.6e+02 Score=22.72 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=10.5
Q ss_pred EEEeccChhhhh
Q psy16523 14 FIYNVTNADEFL 25 (85)
Q Consensus 14 y~FNvTN~eevl 25 (85)
++.|+|||.+++
T Consensus 166 ~ii~~TNPvdi~ 177 (472)
T 1u8x_X 166 WMLNYSNPAAIV 177 (472)
T ss_dssp EEEECCSCHHHH
T ss_pred EEEEeCCcHHHH
Confidence 677999999987
No 7
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=6.40 E-value=2.5e+02 Score=18.12 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=17.2
Q ss_pred eEEEEEEeccChh-------hhhcCCCCCceeEEe
Q psy16523 10 VIRIFIYNVTNAD-------EFLSVPGTKPVLDEI 37 (85)
Q Consensus 10 ~~~~y~FNvTN~e-------evl~g~g~kP~v~Ev 37 (85)
.+.|-+||=||.. ++.. .|+||.++-+
T Consensus 23 sL~F~lyNntn~~lpGnCtl~fs~-~g~~ptv~si 56 (118)
T 2kzb_A 23 SLYFQLFNNTNSVLAGNCKLKFTD-AGDKPTTQII 56 (118)
T ss_dssp EEEEEEEECSSSCCCSSCEECCCS-SSSSCCCCCE
T ss_pred eEEEEEecCCceeccCccEEEEec-CCCCceEEEE
Confidence 4567788888752 2323 4888987643
No 8
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=6.18 E-value=4.7e+02 Score=16.81 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred ceEEEEEEeccChhhhhcCCCCCceeEEeCCeEEE
Q psy16523 9 PVIRIFIYNVTNADEFLSVPGTKPVLDEIGPYVYV 43 (85)
Q Consensus 9 ~~~~~y~FNvTN~eevl~g~g~kP~v~EvGPY~Y~ 43 (85)
..+.|++.|=.+++.+..+-...-.++-.|||.+-
T Consensus 68 P~~~~ivLNR~~~~n~~~~l~~~~~~e~~~~~li~ 102 (134)
T 2lyd_A 68 PFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLY 102 (134)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSCEEEEETTEEEE
T ss_pred CceEEEEEcCCCCcceeEEcCCCcEEEeeCCEEEE
Confidence 35789999999999887633445679999999875
No 9
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=6.14 E-value=2.4e+02 Score=17.74 Aligned_cols=16 Identities=31% Similarity=0.966 Sum_probs=11.9
Q ss_pred CCCc-eeEEeCCeEEEe
Q psy16523 29 GTKP-VLDEIGPYVYVL 44 (85)
Q Consensus 29 g~kP-~v~EvGPY~Y~e 44 (85)
+.+| ++.=+|||+|+-
T Consensus 61 ~~~p~~i~v~~p~tf~I 77 (112)
T 2v31_A 61 GCQPMEIKVLGPYTFSI 77 (112)
T ss_dssp GGCCEEEEECSSSEEEE
T ss_pred CCcceEEEEcCCCEEEE
Confidence 3445 688899999973
No 10
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=6.10 E-value=2.1e+02 Score=22.26 Aligned_cols=14 Identities=7% Similarity=-0.161 Sum_probs=11.5
Q ss_pred EEEEeccChhhhhc
Q psy16523 13 IFIYNVTNADEFLS 26 (85)
Q Consensus 13 ~y~FNvTN~eevl~ 26 (85)
-++.|+|||.+++.
T Consensus 146 A~ii~~TNPvdi~t 159 (480)
T 1obb_A 146 AWYLQAANPIFEGT 159 (480)
T ss_dssp CEEEECSSCHHHHH
T ss_pred eEEEEeCCcHHHHH
Confidence 36789999999874
Done!