RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16523
         (85 letters)



>gnl|CDD|216316 pfam01130, CD36, CD36 family.  The CD36 family is thought to be a
          novel class of scavenger receptors. There is also
          evidence suggesting a possible role in signal
          transduction. CD36 is involved in cell adhesion.
          Length = 460

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 1  MWRKPPVHPVIRIFIYNVTNADEFLSVPGTKPVLDEIGPYVY 42
           W  PPV    +++++NVTN +E L+  G KP+++E+GPYVY
Sbjct: 43 SWENPPVPLYFKVYLFNVTNPEEVLN-GGAKPIVEEVGPYVY 83


>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
           conversion].
          Length = 1149

 Score = 27.7 bits (62), Expect = 0.72
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 3   RKPPVHPVIRIFIYNVTNADEFLSVPGTKPVLDEIGP 39
           R  P +   ++ + NV+         GTK +LDE+GP
Sbjct: 491 RPKPAYDDAKLPVINVSKP----PPRGTKQILDELGP 523


>gnl|CDD|233729 TIGR02103, pullul_strch, alpha-1,6-glucosidases, pullulanase-type. 
           Members of this protein family include secreted (or
           membrane-anchored) pullulanases of Gram-negative
           bacteria and pullulanase-type starch debranching enzymes
           of plants. Both enzymes hydrolyze alpha-1,6 glycosidic
           linkages. Pullulan is an unusual, industrially important
           polysaccharide in which short alpha-1,4 chains
           (maltotriose) are connected in alpha-1,6 linkages.
           Enzymes that cleave alpha-1,6 linkages in pullulan and
           release maltotriose are called pullulanases although
           pullulan itself may not be the natural substrate. This
           family is closely homologous to, but architecturally
           different from, the Gram-positive pullulanases of
           Gram-positive bacteria (TIGR02102) [Energy metabolism,
           Biosynthesis and degradation of polysaccharides].
          Length = 898

 Score = 27.5 bits (61), Expect = 0.92
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 10  VIRIFIYNVTNADEFLSVPGTKPVLDEIGPYVYVLLTSF 48
           V+   +YN TNA    S P  + VLD+I P  Y  L   
Sbjct: 420 VVMDVVYNHTNA----SGPNDRSVLDKIVPGYYHRLNED 454


>gnl|CDD|165309 PHA03008, PHA03008, hypothetical protein; Provisional.
          Length = 234

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 8  HPVIRIFIYNVTNADEFLSVPGTKPVL 34
          H +I+IF     + DE + VPG   +L
Sbjct: 35 HNIIKIFFDKFDDFDEIIFVPGDIDIL 61


>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
          dehydrogenase, ALDH family 12.
          Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
          EC=1.5.1.12), family 12: a proline catabolic enzyme of
          the aldehyde dehydrogenase (ALDH) protein superfamily.
          P5CDH is a mitochondrial enzyme involved in proline
          degradation and catalyzes the NAD + -dependent
          conversion of P5C to glutamate.  The P5CDH, ALDH12A1
          gene, in Arabidopsis, has been identified as an
          osmotic-stress-inducible ALDH gene. This CD contains
          both Viridiplantae and Alveolata P5CDH sequences.
          Length = 489

 Score = 25.5 bits (56), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 20 NADEFLSVPGTKPVLDEIGPYV 41
          N D+F+SVP T    DEI  +V
Sbjct: 21 NGDKFISVPDTD--EDEINEFV 40


>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and
          Rab33B.  Rab33B/Rab33A subfamily. Rab33B is
          ubiquitously expressed in mouse tissues and cells,
          where it is localized to the medial Golgi cisternae. It
          colocalizes with alpha-mannose II. Together with the
          other cisternal Rabs, Rab6A and Rab6A', it is believed
          to regulate the Golgi response to stress and is likely
          a molecular target in stress-activated signaling
          pathways. Rab33A (previously known as S10) is expressed
          primarily in the brain and immune system cells. In
          humans, it is located on the X chromosome at Xq26 and
          its expression is down-regulated in tuberculosis
          patients. Experimental evidence suggests that Rab33A is
          a novel CD8+ T cell factor that likely plays a role in
          tuberculosis disease processes. GTPase activating
          proteins (GAPs) interact with GTP-bound Rab and
          accelerate the hydrolysis of GTP to GDP. Guanine
          nucleotide exchange factors (GEFs) interact with
          GDP-bound Rabs to promote the formation of the
          GTP-bound state. Rabs are further regulated by guanine
          nucleotide dissociation inhibitors (GDIs), which
          facilitate Rab recycling by masking C-terminal lipid
          binding and promoting cytosolic localization. Most Rab
          GTPases contain a lipid modification site at the
          C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
          binding is essential for membrane attachment, a key
          feature of most Rab proteins. Due to the presence of
          truncated sequences in this CD, the lipid modification
          site is not available for annotation.
          Length = 170

 Score = 24.7 bits (54), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 7  VHPVIRIFIYNVTNADEFLSVP 28
          VH V+  F+Y+VTN   F S+P
Sbjct: 76 VHAVV--FVYDVTNMASFHSLP 95


>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
           Provisional.
          Length = 344

 Score = 25.1 bits (56), Expect = 5.7
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 13  IFIYNVTNADEFLSVPGTKPVLDEIGPYVYVLLTSFV 49
           + +Y + +    L++P  K +  ++G  +Y+    FV
Sbjct: 131 LLLYLLGSTSTSLTIPFFKDLSLDLGVILYIPFAYFV 167


>gnl|CDD|220313 pfam09612, HtrL_YibB, Bacterial protein of unknown function
           (HtrL_YibB).  The protein from this rare,
           uncharacterized protein family is designated HtrL or
           YibB in E. coli, where its gene is found in a region of
           LPS core biosynthesis genes. Homologues are found in
           Shigella flexneri, Campylobacter jejuni, and
           Caenorhabditis elegans only. The htrL gene may represent
           an insertion to the LPS core biosynthesis region, rather
           than an LPS biosynthetic protein.
          Length = 279

 Score = 24.4 bits (53), Expect = 8.4
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 38  GPYVYVLL--TSFVANVIQVNKLERNSMTWSGLGF 70
             Y YV+   T FV + I  N    N   W   G+
Sbjct: 116 PEYNYVMNLKTHFVHDAIMRNLTNTNHFAWLDFGY 150


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.141    0.470 

Gapped
Lambda     K      H
   0.267   0.0739    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,383,303
Number of extensions: 338708
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 13
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)