BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16524
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 6 GKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKF 65
GK+TVYLGKRDF+DH++ V+P+DGV++V+ EYLK R+V+ + +RYGRE+ +V+G+ F
Sbjct: 16 GKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTF 75
Query: 66 SKEMIVDRGQIVPSTNE-KPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDED 124
K++ V Q P E K LT +QE+L+KKLG +AYPFTF P P SVTLQPG ED
Sbjct: 76 RKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPED 135
Query: 125 TGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
TGK GV++ +K F ++++EK HKR+SV L I+K
Sbjct: 136 TGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRK 170
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 15/231 (6%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+QYAP G + P++ ++ F S ++LE +LD+EIYYHGE ++ + V N + K+VK
Sbjct: 171 VQYAPERPGPQ-PTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVK 229
Query: 282 NIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIA 341
IK V Q+ ++ + N+ + ++E + V P + F K + L P ++N+++RG+A
Sbjct: 230 KIKISVRQYADICLFNTAQYKCPVAMEEADDT-VAPSSTFCKVYTLTPFLANNREKRGLA 288
Query: 342 LDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKL--SCGTLGGELQT-----DV 394
LDG LK +D NLASSTL+ EG E +GI++SY ++VKL S G L G+L + ++
Sbjct: 289 LDGKLKHEDTNLASSTLLREG-ANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVEL 347
Query: 395 PFKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFAR 445
PF LM+P P + + +D N +DD+IVFEDFAR
Sbjct: 348 PFTLMHPKP-KEEPPHREVPEHETPVD----TNLIELDTNDDDIVFEDFAR 393
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 6 GKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKF 65
GK+TVYLGKRDF+DH++ V+P+DGV++V+ EYLK R+V+ + +RYGRE+ +V+G+ F
Sbjct: 16 GKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTF 75
Query: 66 SKEMIVDRGQIVPSTNE-KPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDED 124
K++ V Q P E K LT +QE+L+KKLG +AYPFTF P P SVTLQPG ED
Sbjct: 76 RKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPED 135
Query: 125 TGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
TGK GV++ +K F ++++EK HKR+SV L I+K
Sbjct: 136 TGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRK 170
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 133/224 (59%), Gaps = 9/224 (4%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+QYAP G + P++ ++ F S ++LE +LD+EIYYHGE ++ + V N + K+VK
Sbjct: 171 VQYAPERPGPQ-PTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVK 229
Query: 282 NIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIA 341
IK V Q+ ++ + N+ + ++E + V P + F K + L P ++N+++RG+A
Sbjct: 230 KIKISVRQYADICLFNTAQYKCPVAMEEADDT-VAPSSTFCKVYTLTPFLANNREKRGLA 288
Query: 342 LDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMNP 401
LDG LK +D NLASSTL+ EG E +GI++SY ++VKL + GG++ ++PF LM+P
Sbjct: 289 LDGKLKHEDTNLASSTLLREG-ANREILGIIVSYKVKVKLVV-SRGGDVAVELPFTLMHP 346
Query: 402 DPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFAR 445
P + + +D N +DD+IVFEDFAR
Sbjct: 347 KP-KEEPPHREVPEHETPVD----TNLIELDTNDDDIVFEDFAR 385
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 6 GKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKF 65
GK+TVYLGKRDF+DH++ V+P+DGV++V+ EYLK R+V+ + +RYGRE+ +V+G+ F
Sbjct: 16 GKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTF 75
Query: 66 SKEMIVDRGQIVPSTNE-KPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDED 124
K++ V Q P E K LT +QE+L+KKLG +AYPFTF P P SVTLQPG ED
Sbjct: 76 RKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPED 135
Query: 125 TGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
TGK GV++ +K F ++++EK HKR+SV L I+K
Sbjct: 136 TGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRK 170
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 137/234 (58%), Gaps = 15/234 (6%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+QYAP G + P++ ++ F S ++LE +LD+EIYYHGE ++ + V N + K+VK
Sbjct: 171 VQYAPERPGPQ-PTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVK 229
Query: 282 NIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIA 341
IK V Q+ ++ + N+ + ++E + V P + F K + L P ++N+++RG+A
Sbjct: 230 KIKISVRQYADICLFNTAQYKCPVAMEEADDT-VAPSSTFCKVYTLTPFLANNREKRGLA 288
Query: 342 LDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKL--SCGTLGGELQT-----DV 394
LDG LK +D NLASSTL+ EG E +GI++SY ++VKL S G L G+L + ++
Sbjct: 289 LDGKLKHEDTNLASSTLLREG-ANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVEL 347
Query: 395 PFKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRL 448
PF LM+P P + + +D N +DD+IVFEDFAR RL
Sbjct: 348 PFTLMHPKP-KEEPPHREVPEHETPVD----TNLIELDTNDDDIVFEDFARQRL 396
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 6 GKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKF 65
GK+TVYLGKRDF+DH++ V+P+DGV++V+ EYLK R+V+ + +RYGRE+ +V+G+ F
Sbjct: 16 GKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVVGLTF 75
Query: 66 SKEMIVDRGQIVPSTNE-KPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDED 124
K++ V Q P E K LT +QE+L+KKLG +AYPFTF P P SVTLQPG ED
Sbjct: 76 RKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPED 135
Query: 125 TGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
TGK GV++ +K F ++++EK HKR+SV L I+K
Sbjct: 136 TGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRK 170
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 137/234 (58%), Gaps = 15/234 (6%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+QYAP G + P++ ++ F S ++LE +LD+EIYYHGE ++ + V N + K+VK
Sbjct: 171 VQYAPERPGPQ-PTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVK 229
Query: 282 NIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIA 341
IK V Q+ ++ + N+ + ++E + V P + F K + L P ++N+++RG+A
Sbjct: 230 KIKISVRQYADICLFNTAQYKCPVAMEEADDT-VAPSSTFCKVYTLTPFLANNREKRGLA 288
Query: 342 LDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKL--SCGTLGGELQT-----DV 394
LDG LK +D NLASSTL+ EG E +GI++SY ++VKL S G L G+L + ++
Sbjct: 289 LDGKLKHEDTNLASSTLLREG-ANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVEL 347
Query: 395 PFKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRL 448
PF LM+P P + + +D N +DD+IVFEDFAR RL
Sbjct: 348 PFTLMHPKP-KEEPPHREVPEHETPVD----TNLIELDTNDDDIVFEDFARQRL 396
>pdb|1SUJ|A Chain A, X-Ray Crystal Structure Of Ambystoma Tigrinum Cone
Arrestin
Length = 392
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 6 GKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKF 65
K+++YLGKRDF+DH+E V+P+DGV++++ EYLK RKVF + +RYGR++ +++G+ F
Sbjct: 15 AKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSF 74
Query: 66 SKEMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDT 125
K++ Q+ P ++P LT +QEKL+KKLG +AYPF F + P SVTLQPG +DT
Sbjct: 75 RKDLYSLATQVYPPETKEP-LTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDT 133
Query: 126 GKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
GK GV+ +K F ++++EK HKR+SV L I+K
Sbjct: 134 GKSCGVDFEVKAFCAENLEEKIHKRNSVQLVIRK 167
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 36/235 (15%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+Q+AP + G P + +++ F S ++LE +LD+EIYYHGE + + +NNT+ K VK
Sbjct: 168 VQFAPANLGVA-PKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVK 226
Query: 282 NIKCYVVQHCEVTMVN-SQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGI 340
IK V Q +V + + ++ + V + ET + V + +KTF + P+ ++N+++RG+
Sbjct: 227 KIKIIVEQVTDVVLFSLDKYVKTVCAEETNDT--VAANSTLSKTFSVTPMLANNREKRGL 284
Query: 341 ALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSC---GTLGGELQTDV--- 394
ALDG LK +D NLAS+T+I G E +GI++SY ++V L G LG +DV
Sbjct: 285 ALDGKLKHEDTNLASTTVIRPG-MDKEVLGILVSYKVKVHLVVARGGILGDLTSSDVAVE 343
Query: 395 -PFKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRL 448
P LM+P P S D+ R E ++I+ E+FAR +L
Sbjct: 344 LPLTLMHPKP---------------SDDKPRSE---------EDIIIEEFARQKL 374
>pdb|3P2D|A Chain A, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
pdb|3P2D|B Chain B, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
Length = 393
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 7 KVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFS 66
K+TVYLGKRDF+DHL++VDP+DGV++V+ +YLK RKVF + +RYGRE+ +V+G+ F
Sbjct: 18 KLTVYLGKRDFVDHLDKVDPVDGVVLVDPDYLKDRKVFVTLTCAFRYGREDLDVLGLSFR 77
Query: 67 KEMIVDRGQ-IVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDT 125
K++ + Q P+ N T +QE+LL+KLG +A+PF F P P SVTLQPG EDT
Sbjct: 78 KDLFIANYQAFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLPCSVTLQPGPEDT 137
Query: 126 GKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
GK GV+ I+ F S++EK HKR+SV L I+K
Sbjct: 138 GKACGVDFEIRAFCAKSLEEKSHKRNSVRLVIRK 171
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 143/229 (62%), Gaps = 12/229 (5%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+Q+AP G + PS+ ++ F S ++LE +LD+E+YYHGE + + V N S K+VK
Sbjct: 172 VQFAPEKPGPQ-PSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVK 230
Query: 282 NIKCYVVQHCEVTMVNS-QFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGI 340
IK V Q+ ++ + ++ Q+ VA +E + V+P + F K + + PL S+N+++RG+
Sbjct: 231 KIKVSVRQYADICLFSTAQYKCPVAQVEQDDQ--VSPSSTFCKVYTITPLLSNNREKRGL 288
Query: 341 ALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMN 400
ALDG LK +D NLASST++ EG E +GI++SY ++VKL + GG++ ++PF LM+
Sbjct: 289 ALDGKLKHEDTNLASSTIVKEG-ANKEVLGILVSYRVKVKLVV-SRGGDVSVELPFVLMH 346
Query: 401 PDP---LLADKDKTNALKKSKSIDRARYE-NSCYATDDDDNIVFEDFAR 445
P P + + ++ A + +D E + YATDDD IVFEDFAR
Sbjct: 347 PKPHDHIALPRPQSAAPETDAPVDTNLIEFETNYATDDD--IVFEDFAR 393
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 134/238 (56%), Gaps = 30/238 (12%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+Q+AP G + P + S F S + L V+L +EIYYHGE + T+ V N++ K+VK
Sbjct: 187 VQHAPRDMGPQ-PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVK 245
Query: 282 NIKCYVVQHCEVTMVNSQFS-RYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGI 340
IK V Q V + +S + + VA+ E +E P P ++ TKT LVPL ++N++RRGI
Sbjct: 246 KIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGI 303
Query: 341 ALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGEL-----QTDVP 395
ALDG +K +D NLASST+I EG MGI++SY ++VKL+ L GEL T+VP
Sbjct: 304 ALDGKIKHEDTNLASSTIIKEG-IDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVP 362
Query: 396 FKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRLNEPDE 453
F+LM+P P D K + D+N VFE+FAR L + E
Sbjct: 363 FRLMHPQPEDPDTAKESF--------------------QDENFVFEEFARQNLKDAGE 400
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 6/166 (3%)
Query: 8 VTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSK 67
VT+YLGKRD+IDH+E V+P+DGV++V+ E +KG++V+ + +RYG+E+ +VMG+ F +
Sbjct: 32 VTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRR 91
Query: 68 EMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGK 127
++ + Q+ P T +QE L+KKLG N YPF FP P SV LQP +D GK
Sbjct: 92 DLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGK 151
Query: 128 PLGVEHAIKTFVGDSID---EKGHKRSSVALAIKKCYVVQHCEVTM 170
GV+ IK F S D +K K+SSV L I+K VQH M
Sbjct: 152 SCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRK---VQHAPRDM 194
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 134/238 (56%), Gaps = 30/238 (12%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+Q+AP G + P + S F S + L V+L +EIYYHGE + T+ V N++ K+VK
Sbjct: 177 VQHAPRDMGPQ-PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVK 235
Query: 282 NIKCYVVQHCEVTMVNSQFS-RYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGI 340
IK V Q V + +S + + VA+ E +E P P ++ TKT LVPL ++N++RRGI
Sbjct: 236 KIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGI 293
Query: 341 ALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGEL-----QTDVP 395
ALDG +K +D NLASST+I EG MGI++SY ++VKL+ L GEL T+VP
Sbjct: 294 ALDGKIKHEDTNLASSTIIKEG-IDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVP 352
Query: 396 FKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRLNEPDE 453
F+LM+P P D K + D+N VFE+FAR L + E
Sbjct: 353 FRLMHPQPEDPDTAKESF--------------------QDENFVFEEFARQNLKDAGE 390
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 6/166 (3%)
Query: 8 VTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSK 67
VT+YLGKRD+IDH+E V+P+DGV++V+ E +KG++V+ + +RYG+E+ +VMG+ F +
Sbjct: 22 VTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRR 81
Query: 68 EMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGK 127
++ + Q+ P T +QE L+KKLG N YPF FP P SV LQP +D GK
Sbjct: 82 DLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGK 141
Query: 128 PLGVEHAIKTFVGDSID---EKGHKRSSVALAIKKCYVVQHCEVTM 170
GV+ IK F S D +K K+SSV L I+K VQH M
Sbjct: 142 SCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRK---VQHAPRDM 184
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+Q+AP G + P + S F S + L V+L +EIYYHGE + T+ V N++ K+VK
Sbjct: 187 VQHAPRDMGPQ-PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVK 245
Query: 282 NIKCYVVQHCEVTMVNSQFS-RYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGI 340
IK V Q V + +S + + VA+ E +E P P ++ TKT LVPL ++N++RRGI
Sbjct: 246 KIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGI 303
Query: 341 ALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGEL-----QTDVP 395
ALDG +K +D NLASST+I EG MGI++SY ++VKL+ L GEL T+VP
Sbjct: 304 ALDGKIKHEDTNLASSTIIKEG-IDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVP 362
Query: 396 FKLMNPDPLLADKDKTNA 413
F+LM+P P D K +A
Sbjct: 363 FRLMHPQPEDPDTAKESA 380
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 103/162 (63%), Gaps = 6/162 (3%)
Query: 8 VTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSK 67
VT+YLGKRD+IDH+E V+P+DGV++V+ E +KG++V+ + +RYG+E+ +VMG+ F +
Sbjct: 32 VTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRR 91
Query: 68 EMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGK 127
++ + Q+ P T +QE L+KKLG N YPF FP P SV LQP +D GK
Sbjct: 92 DLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGK 151
Query: 128 PLGVEHAIKTFVGDSID---EKGHKRSSVALAIKKCYVVQHC 166
GV+ IK F S D +K K+SSV L I+K VQH
Sbjct: 152 SCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRK---VQHA 190
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 118/188 (62%), Gaps = 10/188 (5%)
Query: 222 LQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281
+Q+AP G + P + S F S + L V+L +EIYYHGE + T+ V N++ K+VK
Sbjct: 177 VQHAPRDMGPQ-PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVK 235
Query: 282 NIKCYVVQHCEVTMVNSQFS-RYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGI 340
IK V Q V + +S + + VA+ E +E P P ++ TKT LVPL ++N++RRGI
Sbjct: 236 KIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGI 293
Query: 341 ALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGEL-----QTDVP 395
ALDG +K +D NLASST+I EG MGI++SY ++VKL+ L GEL T+VP
Sbjct: 294 ALDGKIKHEDTNLASSTIIKEG-IDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVP 352
Query: 396 FKLMNPDP 403
F+LM+P P
Sbjct: 353 FRLMHPQP 360
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 103/162 (63%), Gaps = 6/162 (3%)
Query: 8 VTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSK 67
VT+YLGKRD+IDH+E V+P+DGV++V+ E +KG++V+ + +RYG+E+ +VMG+ F +
Sbjct: 22 VTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRR 81
Query: 68 EMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGK 127
++ + Q+ P T +QE L+KKLG N YPF FP P SV LQP +D GK
Sbjct: 82 DLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGK 141
Query: 128 PLGVEHAIKTFVGDSID---EKGHKRSSVALAIKKCYVVQHC 166
GV+ IK F S D +K K+SSV L I+K VQH
Sbjct: 142 SCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRK---VQHA 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,488,589
Number of Sequences: 62578
Number of extensions: 572177
Number of successful extensions: 1277
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 20
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)