Query psy16524
Match_columns 453
No_of_seqs 223 out of 377
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:29:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugu_A S-arrestin; arrestin fo 100.0 3E-124 1E-128 951.3 39.6 342 2-409 26-376 (380)
2 1suj_A CONE arrestin; sensory 100.0 5E-118 2E-122 914.2 42.2 359 2-451 11-377 (392)
3 1g4m_A Beta-arrestin1; sensory 100.0 3E-101 1E-105 791.7 40.3 369 2-445 12-393 (393)
4 2r51_A Vacuolar protein sortin 99.7 1.9E-14 6.4E-19 145.7 31.1 246 25-403 48-301 (340)
5 2fau_A Vacuolar protein sortin 99.6 7.8E-13 2.7E-17 133.9 29.2 243 25-403 48-301 (341)
6 2r51_A Vacuolar protein sortin 94.8 0.2 6.9E-06 50.6 11.8 107 259-401 43-156 (340)
7 2fau_A Vacuolar protein sortin 93.9 0.41 1.4E-05 48.4 11.7 106 259-400 43-155 (341)
8 2p9r_A Alpha-2-M, alpha-2-macr 83.4 1.5 5.3E-05 35.6 5.1 32 250-281 3-34 (102)
9 3hrz_B Cobra venom factor; ser 79.8 5 0.00017 38.3 8.0 74 245-329 78-154 (252)
10 3isy_A Bsupi, intracellular pr 79.6 1.9 6.6E-05 37.5 4.6 48 244-296 2-49 (120)
11 1yew_A Particulate methane mon 77.7 4.8 0.00016 41.3 7.4 74 251-327 250-334 (382)
12 3rfr_A PMOB; membrane, oxidore 77.5 2.7 9.4E-05 43.4 5.6 72 251-327 284-366 (419)
13 2hr0_A Complement C3 beta chai 63.0 20 0.00067 38.1 8.6 44 237-280 94-137 (645)
14 4fxk_B Complement C4-A alpha c 61.8 4.8 0.00016 43.9 3.6 74 245-329 150-224 (767)
15 2pn5_A TEP1R, thioester-contai 53.9 20 0.00068 41.5 7.2 46 236-281 87-132 (1325)
16 3idu_A Uncharacterized protein 51.7 1.1E+02 0.0037 26.4 9.9 65 249-329 19-84 (127)
17 2icn_B Prolactin-inducible pro 50.4 11 0.00037 32.6 3.2 57 246-304 5-62 (118)
18 4fxk_A Complement C4 beta chai 47.3 22 0.00075 37.3 5.7 43 240-282 111-153 (656)
19 3es6_B Prolactin-inducible pro 46.9 33 0.0011 29.4 5.8 53 247-301 6-59 (118)
20 1vjj_A Protein-glutamine gluta 42.7 1.3E+02 0.0044 33.2 10.8 75 247-327 480-554 (692)
21 2hr0_B Complement C3 alpha' ch 40.3 53 0.0018 36.7 7.6 42 245-288 77-119 (915)
22 2hr0_A Complement C3 beta chai 40.0 2.4E+02 0.0084 29.6 12.4 34 249-282 210-245 (645)
23 2bm3_A Type 2 cohesin, scaffol 38.0 39 0.0013 30.9 5.0 35 243-277 1-35 (166)
24 1ex0_A Coagulation factor XIII 37.3 1.5E+02 0.005 33.0 10.3 74 247-327 516-589 (731)
25 1kyf_A Alpha-adaptin C; protei 37.1 1.5E+02 0.0052 28.0 9.3 79 239-328 21-99 (247)
26 3hrz_A Cobra venom factor; ser 36.1 38 0.0013 36.3 5.4 44 237-280 92-135 (627)
27 3cu7_A Complement C5; Mg domai 35.7 52 0.0018 39.3 7.0 44 237-280 112-155 (1676)
28 1g0d_A Protein-glutamine gamma 35.0 82 0.0028 34.8 7.8 49 247-300 471-519 (695)
29 2q3z_A Transglutaminase 2; tra 34.2 1.7E+02 0.0059 32.2 10.2 74 248-327 472-546 (687)
30 3hs8_A Adaptor protein complex 33.4 1.7E+02 0.0058 28.3 9.1 77 240-327 48-124 (273)
31 2b39_A C3; thioester, immune d 33.3 71 0.0024 38.1 7.6 72 247-329 826-901 (1661)
32 3vmn_A Dextranase; TIM barrel, 30.6 44 0.0015 36.5 4.8 30 251-280 9-38 (643)
33 2b39_A C3; thioester, immune d 30.6 89 0.003 37.3 7.8 44 237-280 115-158 (1661)
34 3prx_B Cobra venom factor; imm 29.1 67 0.0023 38.7 6.4 47 247-295 812-858 (1642)
35 1xwv_A DER F II; beta sheets, 28.2 2.2E+02 0.0076 24.0 8.0 65 259-330 28-94 (129)
36 1g4m_A Beta-arrestin1; sensory 27.9 1E+02 0.0035 31.3 6.8 37 250-287 17-57 (393)
37 4acq_A Alpha-2-macroglobulin; 27.2 79 0.0027 37.4 6.5 72 247-329 767-839 (1451)
38 4acq_A Alpha-2-macroglobulin; 26.8 1.1E+02 0.0039 36.1 7.7 45 237-281 92-136 (1451)
39 2pn5_A TEP1R, thioester-contai 21.5 2.4E+02 0.0083 32.6 9.0 39 247-287 664-702 (1325)
40 3prx_B Cobra venom factor; imm 20.9 1E+02 0.0036 37.0 5.9 44 237-280 114-157 (1642)
No 1
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=100.00 E-value=3.1e-124 Score=951.28 Aligned_cols=342 Identities=44% Similarity=0.742 Sum_probs=322.9
Q ss_pred CCCCceEEEEecceeeeecCCCceeeeeEEEEcceeeeceeEEEEEEEEEeccccCccccCcccchheeeeeeEEeeCCC
Q psy16524 2 TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSKEMIVDRGQIVPSTN 81 (453)
Q Consensus 2 ~spn~klt~YlgkRd~vd~~~~vd~v~Gvv~vd~~~l~~rkV~~ql~~tfRYGred~eVmgl~F~ke~~~~~~qi~P~~~ 81 (453)
+||||||||||||||||||+++||||||||+||||||+|||||+||+|||||||||+|||||+||||||+++.|+||+.+
T Consensus 26 ~s~n~klt~YlgkRdfvdh~~~vdpvdGvv~vd~~~~~~rkvf~~l~~~fRYGred~dV~Gl~F~kdl~~~~~qvyP~~~ 105 (380)
T 3ugu_A 26 ISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVG 105 (380)
T ss_dssp ECTTSSEEEEESCSEEEECSSCBCCEEEEEEECHHHHTTCEEEEEEEEEEEECC------CCCEEEEEEEEEEEEESCCS
T ss_pred eCCCCcEEEEecCceEEeecCcccccceEEEECHHHhCCCEEEEEEEEEEecCCCccccccchhhhhhhheeEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcHHHHHHhhccCCCeeeeEeeCCCCCCceEEecCCCCCCCCcceeEEEEEEEEcCCC---cccCcccceeEEeEE
Q psy16524 82 EKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHAIKTFVGDSI---DEKGHKRSSVALAIK 158 (453)
Q Consensus 82 ~~~~lt~lQe~L~kklG~~a~PF~f~lp~~~P~Sv~Lqp~~~~~G~p~gv~Y~Vka~iad~~---~ek~~kr~sv~~~Ir 158 (453)
.+.+||+||||||||||.|||||+|+||+++||||+|||||+|+|+||||+|+||||+|++. +||.|||++|+|+||
T Consensus 106 ~~~~lT~lQe~L~kKlG~nayPF~f~LP~~lPsSv~LQp~p~d~Gk~cgV~YeVKafia~~~~~~~dk~~Kr~sV~L~Ir 185 (380)
T 3ugu_A 106 ASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIR 185 (380)
T ss_dssp CCCCCCHHHHHHHHHHCTTEEEEEECCCSSCCCSEEECCCTTCCSCCEEEEEEEEEEEEBCCSSSSSBCCGGGEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCcCceeEEEeCCCCCCCEEEeccCCccCCCccceEEEEEEEEccCcccccccccccceEEEeee
Confidence 88999999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred EeeEEeeeeeeeecccchhhhcccchhhhhccccchhhhcccccccccccccccccCCCCCcccccCCCCCCCCCCceee
Q psy16524 159 KCYVVQHCEVTMVNSQFSRYVASLETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLV 238 (453)
Q Consensus 159 k~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~aP~~~~~~~p~~e~ 238 (453)
+ +||||...+++ |++|+
T Consensus 186 k--------------------------------------------------------------lq~aP~~~~~~-P~~e~ 202 (380)
T 3ugu_A 186 K--------------------------------------------------------------VQHAPRDMGPQ-PRAEA 202 (380)
T ss_dssp E--------------------------------------------------------------EEBCCSCCCCC-CEEEE
T ss_pred e--------------------------------------------------------------cccCCcccCCC-CcceE
Confidence 9 99999988887 99999
Q ss_pred eeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEEEeeeeccCCcCCC
Q psy16524 239 SKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYVASLETREGCPVTP 317 (453)
Q Consensus 239 ~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~Va~~E~~eG~pV~p 317 (453)
+|+|||++|+|+|+|+|||++|+|||+|+|+++|+|+|+++|++||++|+|+++++|| +|+|+++||.+|+.+ ||+|
T Consensus 203 ~K~F~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~y~~~Va~~E~~e--pV~p 280 (380)
T 3ugu_A 203 SWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQE--KVPP 280 (380)
T ss_dssp EEECTTCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCEEEEEEEEEECSC--CBCT
T ss_pred EEEeEecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCCeEEEEEEEeccCC--cCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999876 9999
Q ss_pred CCeEEEEEEEeeccCCCCccceeeecCcccCCCCcCCCceeecCCCCCCCceeeEEEEEEEEEEEEcCCC-----cceeE
Q psy16524 318 GAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLG-----GELQT 392 (453)
Q Consensus 318 gst~~k~~~L~Pll~~nr~krglALdG~Lk~edtnLASSTil~~~~~~ke~~gI~VSY~VKVkL~vsg~g-----sdv~v 392 (453)
|++|+++|+|+|++++||+||||||||+|||||||||||||+.++. +||++||.|||+|||+|++|++| |||.+
T Consensus 281 gst~~k~~~l~P~l~~n~~krglALdG~lk~edtnLASsT~~~~~~-~ke~~GI~VsY~VkVkl~v~~lgg~~~~sdv~~ 359 (380)
T 3ugu_A 281 NSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGI-DKTVMGILVSYQIKVKLTVSGLLGELTSSEVAT 359 (380)
T ss_dssp TEEEEEEEEECCCGGGCSCCTTSCBSSCTTCTTCCBCCCCCCCTTC-CGGGGSEEEEEEEEEEEEECCCTTCSSCEEEEE
T ss_pred CCeEEeeEEEEEecccCCceeeEEecceeccCCCcccceeEecCCC-CCcceEEEEEEEEEEEEEEecccCCccccceEE
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999644 59999
Q ss_pred EeeEEeeCCCCCCcCcc
Q psy16524 393 DVPFKLMNPDPLLADKD 409 (453)
Q Consensus 393 eLPf~L~hp~P~~~~~~ 409 (453)
||||+||||+|+++...
T Consensus 360 elPf~Lmhp~P~~~~~~ 376 (380)
T 3ugu_A 360 EVPFRLMHPQPEDPDTA 376 (380)
T ss_dssp EEEEEEEBCCC------
T ss_pred EecccccCCCCCCcccc
Confidence 99999999999876543
No 2
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=100.00 E-value=5.5e-118 Score=914.22 Aligned_cols=359 Identities=42% Similarity=0.766 Sum_probs=339.2
Q ss_pred CCCCceEEEEecceeeeecCCCceeeeeEEEEcceeeeceeEEEEEEEEEeccccCccccCcccchheeeeeeEEeeCCC
Q psy16524 2 TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSKEMIVDRGQIVPSTN 81 (453)
Q Consensus 2 ~spn~klt~YlgkRd~vd~~~~vd~v~Gvv~vd~~~l~~rkV~~ql~~tfRYGred~eVmgl~F~ke~~~~~~qi~P~~~ 81 (453)
+||||||||||||||||||+++||||||||+|||+||+|||||+||+|||||||||+|||||+|+||+|+++.|+||+.
T Consensus 11 ~s~n~~~t~yl~krd~vd~~~~vd~vdGvV~vd~~~lk~rkv~~~l~~~fryGred~~v~Gl~f~kel~~~~~qv~p~~- 89 (392)
T 1suj_A 11 TCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQVYPPE- 89 (392)
T ss_dssp ECTTSSEEEEESCSEEEECSSCBCCEEEEEEECTTTSSSCEEEEEEEEEEEEECCSSCCSSCEEEEEEEEEEEEEESCC-
T ss_pred cCCCCeEEEEECCceEEeecCccCceeeEEEEcHHHhccceEEEEEEEeeccCCCchhcCcceEEEEEEEEEEEEeCCC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHhhccCCCeeeeEeeCCCCCCceEEecCCCCCCCCcceeEEEEEEEEcCCCcccCcccceeEEeEEEee
Q psy16524 82 EKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKCY 161 (453)
Q Consensus 82 ~~~~lt~lQe~L~kklG~~a~PF~f~lp~~~P~Sv~Lqp~~~~~G~p~gv~Y~Vka~iad~~~ek~~kr~sv~~~Irk~~ 161 (453)
.++.+|+|||||++++|.|+|||+|+||+++||||+|||+++|+|++|||+|+|||+++++.++|.|||++|+|+||+
T Consensus 90 ~~~~~t~lQe~Ll~~~G~h~fPFsFqLP~~lPsSf~lqp~~~~eGk~g~VrY~VKa~i~~~~~dk~~Kr~tv~l~ir~-- 167 (392)
T 1suj_A 90 TKEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHKRNSVQLVIRK-- 167 (392)
T ss_dssp SCCCCCHHHHHHHHHHCSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEESCTTSCCCGGGEEEEEEEE--
T ss_pred CCccccHHHHHhhhcccCeeEeEEeeCCCCCCCeEEeccCCccCCCceeEEEEEEEEEcCChhhccceEEEEEEeeec--
Confidence 677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeeecccchhhhcccchhhhhccccchhhhcccccccccccccccccCCCCCcccccCCCCCCCCCCceeeeee
Q psy16524 162 VVQHCEVTMVNSQFSRYVASLETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLVSKG 241 (453)
Q Consensus 162 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~aP~~~~~~~p~~e~~K~ 241 (453)
++|+|...+++ |+.+..|+
T Consensus 168 ------------------------------------------------------------l~~~P~~~~~~-p~~e~~k~ 186 (392)
T 1suj_A 168 ------------------------------------------------------------VQFAPANLGVA-PKTEITRQ 186 (392)
T ss_dssp ------------------------------------------------------------EECCCSSCCCC-CCCEEEEE
T ss_pred ------------------------------------------------------------cccCccccCCC-CeeEEEEE
Confidence 89999888776 99999999
Q ss_pred eeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEEEeeeeccCCcCCCCCe
Q psy16524 242 FTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYVASLETREGCPVTPGAA 320 (453)
Q Consensus 242 F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~Va~~E~~eG~pV~pgst 320 (453)
|||++|+|+|+|+|||++|+|||+|+|++.|+|+|+++|++|+++|.|+++++|| +++|+++|+.+|+.+ +|.||++
T Consensus 187 f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~~k~~Va~~e~~e--~V~pgst 264 (392)
T 1suj_A 187 FMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETND--TVAANST 264 (392)
T ss_dssp EEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCCEEEEEEEEEECCC--CBCTTEE
T ss_pred eEecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCCcEEEEEEEEecCC--CcCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999876 9999999
Q ss_pred EEEEEEEeeccCCCCccceeeecCcccCCCCcCCCceeecCCCCCCCceeeEEEEEEEEEEEEcCCC-------cceeEE
Q psy16524 321 FTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLG-------GELQTD 393 (453)
Q Consensus 321 ~~k~~~L~Pll~~nr~krglALdG~Lk~edtnLASSTil~~~~~~ke~~gI~VSY~VKVkL~vsg~g-------sdv~ve 393 (453)
|++++.|+|++++||+||||||||+|||||||||||||+.++. +|++|||.|||+|||+++++++| +|+.++
T Consensus 265 ~~k~~~L~P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~-~~~~~gI~VsY~vkVkl~v~~gg~~~~~~s~d~~ve 343 (392)
T 1suj_A 265 LSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTVIRPGM-DKEVLGILVSYKVKVHLVVARGGILGDLTSSDVAVE 343 (392)
T ss_dssp EEEEEEECCCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTS-CGGGGSEEEEEEEEEEEEEETTSSTTCCCCEEEEEE
T ss_pred EEEEEEEeccccCCCccceeeecccccCCCccccccccccCCC-CccccceEEEEEEEEEEEEcCCcccccccccCeeEE
Confidence 9999999999999999999999999999999999999999998 99999999999999999999733 499999
Q ss_pred eeEEeeCCCCCCcCcccccccccCCccccccccccCCCCCCCCCeEeeeccccccCCC
Q psy16524 394 VPFKLMNPDPLLADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRLNEP 451 (453)
Q Consensus 394 LPf~L~hp~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~ 451 (453)
|||+||||+|.+... .+|||||||||||+||++.
T Consensus 344 lPf~L~~p~P~~~~~------------------------~~~~~~v~e~f~r~~~~~~ 377 (392)
T 1suj_A 344 LPLTLMHPKPSDDKP------------------------RSEEDIIIEEFARQKLDGE 377 (392)
T ss_dssp EEEEEECCCCCCC-------------------------------CEEEECSCCBC---
T ss_pred ECeEEeCCCCCCccc------------------------CCCCcEEEhhhhhhhhccc
Confidence 999999999997321 1368999999999999765
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=100.00 E-value=2.9e-101 Score=791.68 Aligned_cols=369 Identities=45% Similarity=0.787 Sum_probs=334.1
Q ss_pred CCCCceEEEEecceeeeecCCCceeeeeEEEEcceeeeceeEEEEEEEEEeccccCccccCcccchheeeeeeEEeeCCC
Q psy16524 2 TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSKEMIVDRGQIVPSTN 81 (453)
Q Consensus 2 ~spn~klt~YlgkRd~vd~~~~vd~v~Gvv~vd~~~l~~rkV~~ql~~tfRYGred~eVmgl~F~ke~~~~~~qi~P~~~ 81 (453)
+|||||||+||||||||||++++|+|+|+|+||++++|+|+||++|+|+|||||||+||||++|+|++|+.+.|+||+..
T Consensus 12 ~s~n~~i~~yl~krdfvd~~~~~d~V~GvV~id~~~lk~r~v~v~l~~~frygr~~~~v~g~~f~ke~~~~~~~v~p~~~ 91 (393)
T 1g4m_A 12 ASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAP 91 (393)
T ss_dssp ECTTSSCEEEESCSEEEECSSCBCCEEEEEECCHHHHTTCEEEEEEEEEEEESCTTCCCTTTCEEEEEEEEEEEEESCST
T ss_pred eCCCCeEEEEeCCceEEEecCCCCEEEEEEEEehhHhcccEEEEEEEEEEEecCCcceecccccceeEEEEEEEEeCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred -CCCCCcHHHHHHhhccCCCeeeeEeeCCCCCCceEEecCCCCCCCCcceeEEEEEEEEcCCCcccCcccceeEEeEEEe
Q psy16524 82 -EKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKC 160 (453)
Q Consensus 82 -~~~~lt~lQe~L~kklG~~a~PF~f~lp~~~P~Sv~Lqp~~~~~G~p~gv~Y~Vka~iad~~~ek~~kr~sv~~~Irk~ 160 (453)
.+.+||+|||+|++++|.|+|||+|+||+++|+||.|||+++|.|++|+|+|.|||++++..++|.||+++++++||+
T Consensus 92 ~~~~~lt~lqe~l~~~~G~h~fPF~f~LP~~lPsSfelq~~~~d~G~~g~IrY~Vka~i~~~~~~k~~K~~~v~l~i~~- 170 (393)
T 1g4m_A 92 EDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRK- 170 (393)
T ss_dssp TSCCCCCHHHHHHHHHSCTTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEESSTTSCCCGGGEEEEEEEE-
T ss_pred cccCccchhhhhhhccCCceEEEEEeeCCCCCCceEEEccccccCCCcEEEEEEEEEEEcCCcccccceEEEEEEeccc-
Confidence 567899999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred eEEeeeeeeeecccchhhhcccchhhhhccccchhhhcccccccccccccccccCCCCCcccccCCCCCCCCCCceeeee
Q psy16524 161 YVVQHCEVTMVNSQFSRYVASLETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLVSK 240 (453)
Q Consensus 161 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~aP~~~~~~~p~~e~~K 240 (453)
++++|...+++ |..+..|
T Consensus 171 -------------------------------------------------------------l~~~p~~~~~~-~~~e~~k 188 (393)
T 1g4m_A 171 -------------------------------------------------------------VQYAPERPGPQ-PTAETTR 188 (393)
T ss_dssp -------------------------------------------------------------EECCCCCCSSC-CCCEEEE
T ss_pred -------------------------------------------------------------cccCchhhcCC-CceEEEE
Confidence 88888776655 8899999
Q ss_pred eeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEEEeeeeccCCcCCCCC
Q psy16524 241 GFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYVASLETREGCPVTPGA 319 (453)
Q Consensus 241 ~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~Va~~E~~eG~pV~pgs 319 (453)
.|||++|+|+|+|+|||++|+|||+|.|++.|+|+|++.|++|+++|.|++++++| +++|+++|+.+|+.+ +|.||+
T Consensus 189 ~fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~~s~~~~k~~Va~~e~~~--~V~~gs 266 (393)
T 1g4m_A 189 QFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADD--TVAPSS 266 (393)
T ss_dssp ECBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEEECC--CBCTTE
T ss_pred EEEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEEecCCceEEEEEEEecCC--cCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999876 899999
Q ss_pred eEEEEEEEeeccCCCCccceeeecCcccCCCCcCCCceeecCCCCCCCceeeEEEEEEEEEEEEcCCC-------cceeE
Q psy16524 320 AFTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLG-------GELQT 392 (453)
Q Consensus 320 t~~k~~~L~Pll~~nr~krglALdG~Lk~edtnLASSTil~~~~~~ke~~gI~VSY~VKVkL~vsg~g-------sdv~v 392 (453)
++++++.|+|+++.||+||||||||+||||||+||+++|+.++. ++|++||.|+|+|+|+|.++++| +++.+
T Consensus 267 ~~~~~~~L~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~-~~~~~gi~VsY~vkV~l~v~~gg~~~~~~~~~l~~ 345 (393)
T 1g4m_A 267 TFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGA-NREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAV 345 (393)
T ss_dssp EEEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTC-CSGGGSEEEEEEEEEEEEECCC--------CEEEE
T ss_pred EEeeEEEEcCCCCCcccccceeeccccccCCcccccceeecCCC-CccccceEEEEEEEEEEEecCCCcccccccccEEE
Confidence 99999999999999999999999999999999999999999998 99999999999999999998632 49999
Q ss_pred EeeEEeeCCCCCCcCc----ccccccccCCccccccccccCCCCCCCCCeEeeeccc
Q psy16524 393 DVPFKLMNPDPLLADK----DKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFAR 445 (453)
Q Consensus 393 eLPf~L~hp~P~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~~ 445 (453)
+|||+||||+|.+... ....++.+.|+|++++. |||||||||||
T Consensus 346 ~lPi~i~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 393 (393)
T 1g4m_A 346 ELPFTLMHPKPKEEPPHREVPEHETPVDTNLIELDTN---------DDDIVFEDFAR 393 (393)
T ss_dssp EEEEEEECCCCC----------------------------------CCCEEEEECCC
T ss_pred EeCEEEecCCCCccccccccccccCccccccccccCC---------CCcEEEeeecC
Confidence 9999999999998421 22346778899988864 69999999998
No 4
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=99.70 E-value=1.9e-14 Score=145.69 Aligned_cols=246 Identities=14% Similarity=0.192 Sum_probs=164.9
Q ss_pred eeeeeEEEEcc----eeeeceeEEEEEEEEEe--ccccCccccCcccchheeeeeeEEeeCCCCCCCCcHHHHHHhhccC
Q psy16524 25 DPIDGVIVVEN----EYLKGRKVFGQIITTYR--YGREEDEVMGVKFSKEMIVDRGQIVPSTNEKPELTVIQEKLLKKLG 98 (453)
Q Consensus 25 d~v~Gvv~vd~----~~l~~rkV~~ql~~tfR--YGred~eVmgl~F~ke~~~~~~qi~P~~~~~~~lt~lQe~L~kklG 98 (453)
|.|.|.|.|.. +.++-+-|.+.+.+.+. |.+. -.-+++-.+..++++. .|+ .|
T Consensus 48 E~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~--------~~~~f~~~~~eL~~pG----~L~---------~G 106 (340)
T 2r51_A 48 ETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRG--------NHHEFVSLVKDLARPG----EIT---------QS 106 (340)
T ss_dssp CCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTT--------CCEEEEEEEEEEECSE----EEC---------SC
T ss_pred CEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCC--------CcEEEEEEEEEecCCC----ccC---------CC
Confidence 88999999944 46777888888888764 4331 1123333445666653 355 78
Q ss_pred CCeeeeEeeCCCCCCceEEecCCCCCCCCcceeEEEEEEEEcCCCcccCcccceeEEeEEEeeEEeeeeeeeecccchhh
Q psy16524 99 PNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKCYVVQHCEVTMVNSQFSRY 178 (453)
Q Consensus 99 ~~a~PF~f~lp~~~P~Sv~Lqp~~~~~G~p~gv~Y~Vka~iad~~~ek~~kr~sv~~~Irk~~~~q~~~~~~~~~~~~~~ 178 (453)
.+ |||.|.||..+|+|+ +|+.+.++|.|||.+ +| .++--+....+.+ . .
T Consensus 107 ~~-fpF~F~lp~~l~eSy--------~G~~g~IrY~vkv~i-~R----p~~di~~~~eF~V----~--~----------- 155 (340)
T 2r51_A 107 QA-FDFEFTHVEKPYESY--------TGQNVKLRYFLRATI-SR----RLNDVVKEMDIVV----H--T----------- 155 (340)
T ss_dssp EE-EEEEECSBCCCSCCE--------ECSSEEEEEEEEEEE-CC----SSCCEEEEEEEEE----E--C-----------
T ss_pred cE-EeeEeCCCCCCCcCe--------EeeeEEEEEEEEEEE-Ee----cCCCceEEEEEEE----E--e-----------
Confidence 88 999999999999997 999999999999998 33 3331133444444 0 0
Q ss_pred hcccchhhhhccccchhhhcccccccccccccccccCCCCCcccccCCCCCCCCCCceeeeeeeeeecCceEEEEEeccc
Q psy16524 179 VASLETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDRE 258 (453)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~aP~~~~~~~p~~e~~K~F~~ssGpl~LeasLdK~ 258 (453)
..-.|.... +-+.|+ .+ ..-+++++.+||.
T Consensus 156 -------------------------------------------~~~~p~~~~--pIk~Ev----gi-~~cl~Ie~~~~ks 185 (340)
T 2r51_A 156 -------------------------------------------LSTYPELNS--SIKMEV----GI-EDCLHIEFEYNKS 185 (340)
T ss_dssp -------------------------------------------CCCCCCCCC--CEEEEE----EE-TTTEEEEEEESCS
T ss_pred -------------------------------------------CCCCCccCC--CEeccc----cC-CceEEEEEEECcc
Confidence 000122111 122222 11 1228999999999
Q ss_pred cccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceE--EEEEEeeeeccCCcCCCCCeEEEEEEEeeccCCCCc
Q psy16524 259 IYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQF--SRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKD 336 (453)
Q Consensus 259 ~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~y--k~~Va~~E~~eG~pV~pgst~~k~~~L~Pll~~nr~ 336 (453)
+|.+||.|...+.+. .|+..|+.|++.|++..++..-.+.+ .+.++..+..+|.|+. |.++.-.+.|.| +
T Consensus 186 ~y~lgd~I~G~I~f~-~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImdG~p~r-ge~IPirl~Lp~-~----- 257 (340)
T 2r51_A 186 KYHLKDVIVGKIYFL-LVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVR-GESIPIRLFLAG-Y----- 257 (340)
T ss_dssp EEETTCEEEEEEEEE-EECSCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEESCCCT-TCEEEEEEEGGG-S-----
T ss_pred cccCCCeEEEEEEEE-EeeceeEEEEEEEEEEEEEecCCCeeEEEEEEEEEEEecCCccC-CCEEEEEEECCC-C-----
Confidence 999999999888888 77899999999999987632112222 2467888877876555 555433333422 1
Q ss_pred cceeeecCcccCCCCcCCCceeecCCCCCCCceeeEEEEEEEEEEEEcCCCcceeEEeeEEeeCCCC
Q psy16524 337 RRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMNPDP 403 (453)
Q Consensus 337 krglALdG~Lk~edtnLASSTil~~~~~~ke~~gI~VSY~VKVkL~vsg~gsdv~veLPf~L~hp~P 403 (453)
.|.||....++. |.|+|.|.|.+...+ +......+||+|..-.+
T Consensus 258 ---------------~l~PT~~~~~~~-------fsV~Y~Lnlvl~~e~-~~~~~kq~pI~L~R~~~ 301 (340)
T 2r51_A 258 ---------------ELTPTMRDINKK-------FSVRYYLNLVLIDEE-ERRYFKQQEVVLWRKGD 301 (340)
T ss_dssp ---------------CCCCCEEEETTT-------EEEEEEEEEEEEETT-CCEEEEEEEEEEECCC-
T ss_pred ---------------CCCCCccccCCe-------EEEEEEEEEEEEeCC-CcEEEEEeeEEEEECCC
Confidence 355565422332 999999999999997 45999999999998766
No 5
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=99.59 E-value=7.8e-13 Score=133.92 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=157.9
Q ss_pred eeeeeEEEEcce----eeeceeEEEEEEEEEe--ccccCccccCcccchheeeeeeEEeeCCCCCCCCcHHHHHHhhccC
Q psy16524 25 DPIDGVIVVENE----YLKGRKVFGQIITTYR--YGREEDEVMGVKFSKEMIVDRGQIVPSTNEKPELTVIQEKLLKKLG 98 (453)
Q Consensus 25 d~v~Gvv~vd~~----~l~~rkV~~ql~~tfR--YGred~eVmgl~F~ke~~~~~~qi~P~~~~~~~lt~lQe~L~kklG 98 (453)
|.|.|.|.|... .++-+-|.+++.+.+. |.+- -.-+++-...+++|+. .|+ .|
T Consensus 48 E~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~~~~--------~~~~fls~~~eL~~~G----~L~---------~g 106 (341)
T 2fau_A 48 ESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKS--------NTHEFVNLVKELALPG----ELT---------QS 106 (341)
T ss_dssp CCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECSTTC--------CEEEEEEEEEEEECSE----EEC---------SC
T ss_pred CEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEecCC--------CcEEEEEEEEEEcCCC----ccC---------CC
Confidence 889999999664 6788888888888764 3321 1234455566787764 344 67
Q ss_pred CCeeeeEeeCCCCCCceEEecCCCCCCCCcceeEEEEEEEEcCCCcccCcccceeEEeEEEeeEEeeeeeeeecccchhh
Q psy16524 99 PNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKCYVVQHCEVTMVNSQFSRY 178 (453)
Q Consensus 99 ~~a~PF~f~lp~~~P~Sv~Lqp~~~~~G~p~gv~Y~Vka~iad~~~ek~~kr~sv~~~Irk~~~~q~~~~~~~~~~~~~~ 178 (453)
+.|||.|.+|+.+|+|+ +|+.+.++|.|||.+ ++.++--+..+.+.+
T Consensus 107 -~~fpF~F~~~~~~~eSy--------~G~~~~IrY~vrv~i-----~R~~~di~~~~eF~V------------------- 153 (341)
T 2fau_A 107 -RSYDFEFMQVEKPYESY--------IGANVRLRYFLKVTI-----VRRLTDLVKEYDLIV------------------- 153 (341)
T ss_dssp -EEEEEEECSCCCCSCCE--------ECSSEEEEEEEEEEE-----CCSSSCEEEEEEEEE-------------------
T ss_pred -cEEeeEeCCCCCCCcce--------EeeEEEEEEEEEEEE-----EecCcceeEEEEEEE-------------------
Confidence 99999999988899987 999999999999999 333442244444444
Q ss_pred hcccchhhhhccccchhhhcccccccccccccccccCCCCCcccccC--CCCCCCCCCceeeeeeeeeecCceEEEEEec
Q psy16524 179 VASLETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYA--PPSRGRRLPSSLVSKGFTFSQGKINLEVTLD 256 (453)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a--P~~~~~~~p~~e~~K~F~~ssGpl~LeasLd 256 (453)
..+. |.... +-..++. -+++|++++.++
T Consensus 154 -------------------------------------------~~~~~~p~~~~--pi~~evg-----ied~L~ieF~~~ 183 (341)
T 2fau_A 154 -------------------------------------------HQLATYPDVNN--SIKMEVG-----IEDXLHIEFEYN 183 (341)
T ss_dssp -------------------------------------------CCCBCCCCCCC--CEEEEEE-----ETTTEEEEEEES
T ss_pred -------------------------------------------EeCCCCCCCCC--CeEEEEe-----ccccEEEEEEEc
Confidence 1111 11111 0111111 146799999999
Q ss_pred cccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceE--EEEEEeeeeccCCcCCCCCeEEEEEEEeeccCCC
Q psy16524 257 REIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQF--SRYVASLETREGCPVTPGAAFTKTFYLVPLASSN 334 (453)
Q Consensus 257 K~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~y--k~~Va~~E~~eG~pV~pgst~~k~~~L~Pll~~n 334 (453)
|..|.+||.|...+.+. .|+..|+.|+++|++..++..-.+++ .++++..+..+|.|+. |.++.-.+.|.+ +
T Consensus 184 ks~y~l~d~I~G~I~f~-~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImDG~p~r-ge~IPirl~Lp~-~--- 257 (341)
T 2fau_A 184 KSKYHLKDVIVGKIYFL-LVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVK-GESIPIRLFLAG-Y--- 257 (341)
T ss_dssp CSEEETTCEEEEEEEEE-EECSCEEEEEEEEEEEEEESCGGGCEEEEEEEEEEECCCC-------CEEEEEESTT-T---
T ss_pred cccccCCCeEEEEEEEE-EeccceEEEEEEEEEEEEEcCCCCeeeEEEEEEEEEEeCCCccC-CCEEEEEEEcCC-C---
Confidence 99999999999998888 68899999999999987621112233 2578888887776555 444433344422 1
Q ss_pred CccceeeecCcccCCCCcCCCceeecCCCCCCCcee-eEEEEEEEEEEEEcCCCcceeEEeeEEeeCCCC
Q psy16524 335 KDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMG-IVISYSLRVKLSCGTLGGELQTDVPFKLMNPDP 403 (453)
Q Consensus 335 r~krglALdG~Lk~edtnLASSTil~~~~~~ke~~g-I~VSY~VKVkL~vsg~gsdv~veLPf~L~hp~P 403 (453)
.|.||.. +.++ |.|+|.|.|.++..+ +.-.....-|+|..-.+
T Consensus 258 -----------------~l~PT~~--------~~~~~fsV~Y~Lnlvlvde~-~rryfk~~EI~L~R~~~ 301 (341)
T 2fau_A 258 -----------------DPTPTMR--------DVNKKFSVRYFLNLVLVDEE-DRRYFKQQEIILWRKAP 301 (341)
T ss_dssp -----------------CCCCCEE--------EEETTEEEEEEEEEEEEETT-CCEEEEEEEEEEECBCC
T ss_pred -----------------CCCCcch--------hcCCeEEEEEEEEEEEEeCC-CCeeeeeeEEEEEECCC
Confidence 2455543 2233 999999999998875 22344445577776444
No 6
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=94.82 E-value=0.2 Score=50.65 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=70.1
Q ss_pred cccCCCeEEEEEEEeCC---CCceeEeEEEEEEEEEEEEEE-cceEE---EEEEeeeeccCCcCCCCCeEEEEEEEeecc
Q psy16524 259 IYYHGEKVAATIVVNNT---SRKSVKNIKCYVVQHCEVTMV-NSQFS---RYVASLETREGCPVTPGAAFTKTFYLVPLA 331 (453)
Q Consensus 259 ~Y~pGE~I~V~v~I~N~---Ssk~VkkIKv~l~Q~~~v~lf-~g~yk---~~Va~~E~~eG~pV~pgst~~k~~~L~Pll 331 (453)
+|++||+|.=+|.|+.. .....+.|++.+.=.++. .| .+... .....+. ..| .+++|.++.-.|.+ |
T Consensus 43 vY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~-~~~~~~~~~f~~~~~eL~-~pG-~L~~G~~fpF~F~l-p-- 116 (340)
T 2r51_A 43 LFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIEL-YYDRGNHHEFVSLVKDLA-RPG-EITQSQAFDFEFTH-V-- 116 (340)
T ss_dssp EEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEE-GGGTTCCEEEEEEEEEEE-CSE-EECSCEEEEEEECS-B--
T ss_pred cCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEE-EecCCCcEEEEEEEEEec-CCC-ccCCCcEEeeEeCC-C--
Confidence 79999999999999988 667889999999887663 23 44322 2222222 222 35555554334433 1
Q ss_pred CCCCccceeeecCcccCCCCcCCCceeecCCCCCCCceeeEEEEEEEEEEEEcCCCcceeEEeeEEeeCC
Q psy16524 332 SSNKDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMNP 401 (453)
Q Consensus 332 ~~nr~krglALdG~Lk~edtnLASSTil~~~~~~ke~~gI~VSY~VKVkL~vsg~gsdv~veLPf~L~hp 401 (453)
..+.+| .. |. -..|.|.|||.+.-++ . ++..+.+|++...
T Consensus 117 -------------------~~l~eS-y~--G~------~g~IrY~vkv~i~Rp~-~-di~~~~eF~V~~~ 156 (340)
T 2r51_A 117 -------------------EKPYES-YT--GQ------NVKLRYFLRATISRRL-N-DVVKEMDIVVHTL 156 (340)
T ss_dssp -------------------CCCSCC-EE--CS------SEEEEEEEEEEECCSS-C-CEEEEEEEEEECC
T ss_pred -------------------CCCCcC-eE--ee------eEEEEEEEEEEEEecC-C-CceEEEEEEEEeC
Confidence 123333 31 21 2789999999888886 4 9999999999864
No 7
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=93.92 E-value=0.41 Score=48.44 Aligned_cols=106 Identities=21% Similarity=0.330 Sum_probs=66.8
Q ss_pred cccCCCeEEEEEEEeCCC---CceeEeEEEEEEEEEEEEEE-cce---EEEEEEeeeeccCCcCCCCCeEEEEEEEeecc
Q psy16524 259 IYYHGEKVAATIVVNNTS---RKSVKNIKCYVVQHCEVTMV-NSQ---FSRYVASLETREGCPVTPGAAFTKTFYLVPLA 331 (453)
Q Consensus 259 ~Y~pGE~I~V~v~I~N~S---sk~VkkIKv~l~Q~~~v~lf-~g~---yk~~Va~~E~~eG~pV~pgst~~k~~~L~Pll 331 (453)
+|++||+|.=+|.|+... ....+.|++.+.=.++. .| .+. |-..+..+. ..| .+++|.++.-.|.+.+
T Consensus 43 vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~-~~~~~~~~~fls~~~eL~-~~G-~L~~g~~fpF~F~~~~-- 117 (341)
T 2fau_A 43 LFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIEL-FNDKSNTHEFVNLVKELA-LPG-ELTQSRSYDFEFMQVE-- 117 (341)
T ss_dssp EECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEE-CSTTCCEEEEEEEEEEEE-CSE-EECSCEEEEEEECSCC--
T ss_pred cCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEE-EecCCCcEEEEEEEEEEc-CCC-ccCCCcEEeeEeCCCC--
Confidence 899999999999999874 44779999998877663 23 333 222222332 123 3455533433333211
Q ss_pred CCCCccceeeecCcccCCCCcCCCceeecCCCCCCCceeeEEEEEEEEEEEEcCCCcceeEEeeEEeeC
Q psy16524 332 SSNKDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMN 400 (453)
Q Consensus 332 ~~nr~krglALdG~Lk~edtnLASSTil~~~~~~ke~~gI~VSY~VKVkL~vsg~gsdv~veLPf~L~h 400 (453)
.+.+| . .|. -+.|.|.|||.+.-++ . |+..+.+|++..
T Consensus 118 --------------------~~~eS-y--~G~------~~~IrY~vrv~i~R~~-~-di~~~~eF~V~~ 155 (341)
T 2fau_A 118 --------------------KPYES-Y--IGA------NVRLRYFLKVTIVRRL-T-DLVKEYDLIVHQ 155 (341)
T ss_dssp --------------------CCSCC-E--ECS------SEEEEEEEEEEECCSS-S-CEEEEEEEEECC
T ss_pred --------------------CCCcc-e--Eee------EEEEEEEEEEEEEecC-c-ceeEEEEEEEEe
Confidence 22222 2 111 2889999999888876 3 999999999865
No 8
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=83.40 E-value=1.5 Score=35.58 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=26.7
Q ss_pred EEEEEeccccccCCCeEEEEEEEeCCCCceeE
Q psy16524 250 NLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281 (453)
Q Consensus 250 ~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk 281 (453)
.+-+..||.+|.|||+|.+.+-+.|...+.+.
T Consensus 3 ~~fi~tDr~iYrPGetV~~~~~~~~~~~~p~~ 34 (102)
T 2p9r_A 3 LVFVQTDKSIYKPGQTVKFRVVSMDENFHPLN 34 (102)
T ss_dssp EEEEEESCSEECTTCEEEEEEEEECGGGCBCC
T ss_pred eEEEECCCcccCCCCEEEEEEEEECCCCcCCC
Confidence 35578999999999999999999988766554
No 9
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=79.78 E-value=5 Score=38.27 Aligned_cols=74 Identities=9% Similarity=0.242 Sum_probs=52.2
Q ss_pred ecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-c--ceEEEEEEeeeeccCCcCCCCCeE
Q psy16524 245 SQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-N--SQFSRYVASLETREGCPVTPGAAF 321 (453)
Q Consensus 245 ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~--g~yk~~Va~~E~~eG~pV~pgst~ 321 (453)
...|+.++.+||+.+ ..||.+.+.+.|-|...+.++ +++.|...-++|+. . +.+...+ .|.++++-
T Consensus 78 v~kpffv~~~LP~sv-~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~~~~~~~~~~~~~~~~v---------~v~a~~~~ 146 (252)
T 3hrz_B 78 VMKVFFIDLQMPYSV-VKNEQVEIRAILHNYVNEDIY-VRVELLYNPAFCSASTKGQRYRQQF---------PIKALSSR 146 (252)
T ss_dssp BCCSEEEEECCCSCE-ETTCCEEEEEEEEECSSSCEE-EEEEECCCTTEEESCCSSCCEEEEE---------EECTTEEE
T ss_pred EECCEEEEcCCCcEE-eeCCEEEEEEEEEcccCceEE-EEEEEEcCCceEeecCCCCceEEEE---------EECCCCeE
Confidence 346778888999875 589999999999999998865 66766655455554 2 2232222 46677776
Q ss_pred EEEEEEee
Q psy16524 322 TKTFYLVP 329 (453)
Q Consensus 322 ~k~~~L~P 329 (453)
.-.|.|.|
T Consensus 147 ~v~f~i~p 154 (252)
T 3hrz_B 147 AVPFVIVP 154 (252)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 66777877
No 10
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=79.59 E-value=1.9 Score=37.45 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=39.2
Q ss_pred eecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE
Q psy16524 244 FSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV 296 (453)
Q Consensus 244 ~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf 296 (453)
|..|.|.++++-++ .|+.+.+.+.|.|.|+..|. +...=-|..|+.++
T Consensus 2 ~~~~~l~~~v~~~~----~g~~v~~~ltv~N~s~~~v~-l~f~Sgq~~Df~v~ 49 (120)
T 3isy_A 2 MENQEVVLSIDAIQ----EPEQIKFNMSLKNQSERAIE-FQFSTGQKFELVVY 49 (120)
T ss_dssp --CCSEEEEEEEEE----CSSCEEEEEEEEECSSSCEE-EEESSSCCEEEEEE
T ss_pred ccccEEEEEEeecc----CCCeEEEEEEEEcCCCCcEE-EEeCCCCEEEEEEE
Confidence 46788888888887 88999999999999999987 56666677777777
No 11
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=77.72 E-value=4.8 Score=41.25 Aligned_cols=74 Identities=15% Similarity=0.338 Sum_probs=49.5
Q ss_pred EEEEeccccc-cCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEc-ce------EEE-EEEe--eeeccCCcCCCCC
Q psy16524 251 LEVTLDREIY-YHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVN-SQ------FSR-YVAS--LETREGCPVTPGA 319 (453)
Q Consensus 251 LeasLdK~~Y-~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~-g~------yk~-~Va~--~E~~eG~pV~pgs 319 (453)
+++.+.+..| +||-++.++++|+|++++.|+ +.=.+.+++.+-+ +- |.. .+|. +..++..||+||.
T Consensus 250 V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvr---lgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGE 326 (382)
T 1yew_A 250 VSVKVEDATYRVPGRAMRMKLTITNHGNSPIR---LGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGE 326 (382)
T ss_dssp EEEEEEEEEEESSCSEEEEEEEEEECSSSCEE---EEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTC
T ss_pred eEEEeeccEEecCCcEEEEEEEEEcCCCCceE---eeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCc
Confidence 4444555666 899999999999999999976 6666778777643 21 221 2332 3334557999999
Q ss_pred eEEEEEEE
Q psy16524 320 AFTKTFYL 327 (453)
Q Consensus 320 t~~k~~~L 327 (453)
|-+-.+..
T Consensus 327 Tr~~~v~a 334 (382)
T 1yew_A 327 TRTVDVTA 334 (382)
T ss_dssp EEEEEEEE
T ss_pred eeEEEEEe
Confidence 86444443
No 12
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=77.53 E-value=2.7 Score=43.41 Aligned_cols=72 Identities=17% Similarity=0.343 Sum_probs=49.6
Q ss_pred EEEEeccccc-cCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcce-------EEE-EEEe--eeeccCCcCCCCC
Q psy16524 251 LEVTLDREIY-YHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQ-------FSR-YVAS--LETREGCPVTPGA 319 (453)
Q Consensus 251 LeasLdK~~Y-~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~-------yk~-~Va~--~E~~eG~pV~pgs 319 (453)
+++.+.+..| +||-++.++++|+|+|++.|+ +.=.|.+++.+-+.. |.. .++. +. ++. ||.||.
T Consensus 284 V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvr---lgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~-pI~PGE 358 (419)
T 3rfr_A 284 VTTELNGGVYKVPGRELTINVKVKNGTSQPVR---LGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDD-VIAPGE 358 (419)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEECCSSSCBE---EEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCC-CBCTTC
T ss_pred eEEEEeceEEecCCcEEEEEEEEecCCCCceE---EeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCC-CcCCCc
Confidence 5666677777 899999999999999999985 666677777654331 211 2222 44 445 999999
Q ss_pred eEEEEEEE
Q psy16524 320 AFTKTFYL 327 (453)
Q Consensus 320 t~~k~~~L 327 (453)
|-+-.+.+
T Consensus 359 Trt~~V~a 366 (419)
T 3rfr_A 359 SKEIVVKI 366 (419)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEe
Confidence 86444443
No 13
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=63.03 E-value=20 Score=38.13 Aligned_cols=44 Identities=27% Similarity=0.212 Sum_probs=35.2
Q ss_pred eeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCcee
Q psy16524 237 LVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSV 280 (453)
Q Consensus 237 e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~V 280 (453)
...+..+++.....+-+..||.+|.|||+|.+.+-+.|...+.+
T Consensus 94 ~~~~~v~~~~~~~~~fi~TDR~iYrPGqtV~~r~i~~d~~~~p~ 137 (645)
T 2hr0_A 94 VVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPV 137 (645)
T ss_dssp EEEEEEEEECCCCEEEEEESCSBCCTTSEEEEEEEEECTTSCBC
T ss_pred EEEEEEEEecCCccEEEEcCCccCCCCCEEEEEEEEECCCCccc
Confidence 34566777777777889999999999999998888777665554
No 14
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=61.80 E-value=4.8 Score=43.86 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=50.0
Q ss_pred ecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEEEeeeeccCCcCCCCCeEEE
Q psy16524 245 SQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYVASLETREGCPVTPGAAFTK 323 (453)
Q Consensus 245 ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~Va~~E~~eG~pV~pgst~~k 323 (453)
...|+.++.+||+. ...||.+.|.+.|.|.+.+.++ ++|.|.-.-.+++. .+.....+ .|++|++-.-
T Consensus 150 v~kpf~v~~~lP~~-v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~~~~~~~~~~~~~~~---------~v~a~~~~~v 218 (767)
T 4fxk_B 150 VFREFHLHLRLPMS-VRRFEQLELRPVLYNYLDKNLT-VSVHVSPVEGLCLAGGGGLAQQV---------LVPAGSARPV 218 (767)
T ss_dssp CCCSEEEECCCCSC-EETTCEEEECCEEEECSSSCEE-EEEEECCCTTEECSSSSCCCEEE---------EECSSCEEEC
T ss_pred EeccEEEecCCCCe-eccCCEEEEEEEEEECCCCCEE-EEEEEEecCCeEEecCCceeEEE---------EEcCCCeEEE
Confidence 34788889999986 5899999999999999998875 56655433334443 33322222 3566666555
Q ss_pred EEEEee
Q psy16524 324 TFYLVP 329 (453)
Q Consensus 324 ~~~L~P 329 (453)
.|.|.|
T Consensus 219 ~f~i~~ 224 (767)
T 4fxk_B 219 AFSVVP 224 (767)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 666766
No 15
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=53.88 E-value=20 Score=41.53 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=37.9
Q ss_pred eeeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeE
Q psy16524 236 SLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281 (453)
Q Consensus 236 ~e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk 281 (453)
....+..+++.....+-+..||.+|.|||+|.+.+-+.|...+.+.
T Consensus 87 f~~~~~v~~~~~~~~~fi~TDr~iYrPGqtV~~r~~~~~~~~~p~~ 132 (1325)
T 2pn5_A 87 FHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPA 132 (1325)
T ss_dssp CEEEEEEEECSCSEEEEEEESCSEECTTCEEEEEEEEEETTSSCCS
T ss_pred EEEEEEEEEEcccccEEEecCCCccCCCCEEEEEEEEecCCccccc
Confidence 3455677888888899999999999999999998888877766554
No 16
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=51.65 E-value=1.1e+02 Score=26.36 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=43.7
Q ss_pred eEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEEEeeeeccCCcCCCCCeEEEEEEE
Q psy16524 249 INLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYVASLETREGCPVTPGAAFTKTFYL 327 (453)
Q Consensus 249 l~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~Va~~E~~eG~pV~pgst~~k~~~L 327 (453)
|.++++-|. -...|+.+.+++.|.|.-+......+|. +| +|..-. ... . .+++|.+-+-.|..
T Consensus 19 L~V~is~P~-~v~~G~~~ti~vtV~N~G~~~a~~~~V~--------lyvng~~v~---t~~-v---~La~G~s~tv~f~~ 82 (127)
T 3idu_A 19 LTVEIKGPD-VVGVNKLAEYEVHVKNLGGIGVPSTKVR--------VYINGTLYK---NWT-V---SLGPKEEKVLTFNW 82 (127)
T ss_dssp EEEEEESCS-EECTTCCEEEEEEEEECSSSCEEEEEEE--------EEETTEEEE---EEE-E---EECTTCEEEEEEEE
T ss_pred eEEEecCCC-cccCCCEEEEEEEEEECCCCccCCcEEE--------EEECCEEEe---eEE-e---ccCCCCeEEEEEEE
Confidence 444445444 4478999999999999999999876665 45 676421 111 1 36778876666666
Q ss_pred ee
Q psy16524 328 VP 329 (453)
Q Consensus 328 ~P 329 (453)
.|
T Consensus 83 ~~ 84 (127)
T 3idu_A 83 TP 84 (127)
T ss_dssp CC
T ss_pred Ec
Confidence 55
No 17
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=50.37 E-value=11 Score=32.62 Aligned_cols=57 Identities=12% Similarity=0.291 Sum_probs=43.5
Q ss_pred cCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEE
Q psy16524 246 QGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYV 304 (453)
Q Consensus 246 sGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~V 304 (453)
..|+.|+.+||..+ ..||...+.++|-|.=++-|. |++.|....++-+- +.+|+.++
T Consensus 5 ~qPffveltlPySv-~rgE~f~lkatVfNyL~~Ci~-V~v~L~~S~~~~~~~~~~~s~Cl 62 (118)
T 2icn_B 5 RKIIIKNFDIPKSV-RPNDEVTAVLAVQTELKECMV-VKTYLISSIPLQGAFNYKYTACL 62 (118)
T ss_dssp CCCSEECCCCCSEE-CSSCCEEEEEEEEECCSSCEE-EEEEEEESSCCCGGGGCEEEEEE
T ss_pred cCCEEEEEeCCCcc-cCCCEEEEEEEEEeccCcCEE-EEEEEcCCCCeEeecCCcCCEEE
Confidence 35778888999876 899999999999999888776 88888877664332 34455444
No 18
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=47.30 E-value=22 Score=37.25 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.8
Q ss_pred eeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEe
Q psy16524 240 KGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKN 282 (453)
Q Consensus 240 K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~Vkk 282 (453)
+...++...-.+=+..||.+|.|||+|.+.+-+.|..-+.+..
T Consensus 111 ~~v~~~~~~~~vFIqTDr~iYrPGqtV~~r~i~~d~~~~p~~~ 153 (656)
T 4fxk_A 111 INLLFSSRRGHLFLQTDQPIYNPGQRVRYRVFALDQKMRPSTD 153 (656)
T ss_dssp EEEEECCCCSEEEEEESCSEECTTCEEEEEEEEECSSSSBCCC
T ss_pred eEEEEeccCccEEEECCCCCcCCCCEEEEEEEEECCccCcCcc
Confidence 4555665555677789999999999999999988887776553
No 19
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=46.88 E-value=33 Score=29.38 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=38.2
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFS 301 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk 301 (453)
.++.++.+||..+ ..||.+.+.+.|-|.=...++ +++.|.-..++.+- +.+++
T Consensus 6 k~~~~~l~lPysv-~rgE~~~~~~~V~nyl~~~~~-v~v~L~~s~~~~~~~~~~~t 59 (118)
T 3es6_B 6 KIIIKNFDIPKSV-RPNDEVTAVLAVQTELKECMV-VKTYLISSIPLQGAFNYKYT 59 (118)
T ss_dssp CCCEECCCCCSEE-CSSCCEEEEEEEEECCSSCEE-EEEEEEESSCCCSGGGCEEE
T ss_pred ceEEEEeeCCceE-ecCCEEEEEEEEEecccceEE-EEEEecCCcCEEccCCCccc
Confidence 4577778888754 689999999999999888776 77777655454333 44443
No 20
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=42.65 E-value=1.3e+02 Score=33.23 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=48.0
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceEEEEEEeeeeccCCcCCCCCeEEEEEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFY 326 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~yk~~Va~~E~~eG~pV~pgst~~k~~~ 326 (453)
..|++++.+..... -|+.+.|.+.+.|.|+.. +.+++. -.+...+|+|.-...+...... ..+.|+++-.-.+.
T Consensus 480 ~~v~~~~~~~~~~~-~G~df~v~l~~~N~s~~~-~~v~~~--l~a~~v~YtG~~~~~~~~~~~~--v~L~p~~~~~i~~~ 553 (692)
T 1vjj_A 480 PSIIGKLKVAGMLA-VGKEVNLVLLLKNLSRDT-KTVTVN--MTAWTIIYNGTLVHEVWKDSAT--MSLDPEEEAEHPIK 553 (692)
T ss_dssp CSEEEEEEECSCCB-TTSCEEEEEEEEECSSSC-EEEEEE--EEEEEECTTCCEEEEEEEEEEE--EEECTTCEEEEEEE
T ss_pred CCeEEEEEcCCCCC-CCCCEEEEEEEEECCCCC-EEEEEE--EEEEEEeeCCccccceEEeeEE--EEECCCceEEEEEE
Confidence 34777777755543 599999999999999976 544444 4555556688765555443332 25677766444444
Q ss_pred E
Q psy16524 327 L 327 (453)
Q Consensus 327 L 327 (453)
|
T Consensus 554 i 554 (692)
T 1vjj_A 554 I 554 (692)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=40.28 E-value=53 Score=36.68 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=34.1
Q ss_pred ecCceEEEEEeccccccCCCeEEEEEEEeCCCC-ceeEeEEEEEE
Q psy16524 245 SQGKINLEVTLDREIYYHGEKVAATIVVNNTSR-KSVKNIKCYVV 288 (453)
Q Consensus 245 ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ss-k~VkkIKv~l~ 288 (453)
...|+.++.+||+. ..+||.+.+.+.|.|.+. +.++ ++|.|.
T Consensus 77 v~kp~~v~~~LP~~-v~~GD~~~i~~~v~N~~~~~~~~-v~v~l~ 119 (915)
T 2hr0_B 77 VMQDFFIDLRLPYS-VVRNEQVEIRAVLYNYRQNQELK-VRVELL 119 (915)
T ss_dssp ECCSSEEEEECCSE-EETTCCEEEEEEEEECCSSCCEE-EEEEEC
T ss_pred EeccEEEEccCCCE-EecCcEEEEEEEEEcCCCCeeEE-EEEEEe
Confidence 45788899999985 579999999999999999 8764 555543
No 22
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=40.03 E-value=2.4e+02 Score=29.64 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.7
Q ss_pred eEEEEEeccccccCC--CeEEEEEEEeCCCCceeEe
Q psy16524 249 INLEVTLDREIYYHG--EKVAATIVVNNTSRKSVKN 282 (453)
Q Consensus 249 l~LeasLdK~~Y~pG--E~I~V~v~I~N~Ssk~Vkk 282 (453)
+++++..++..|..| +.+.++++......++|..
T Consensus 210 feV~i~~~~~~~~~~~~~~~~v~v~a~Y~~G~Pv~G 245 (645)
T 2hr0_A 210 FEVIVEPTEKFYYIYNEKGLEVTITARFLYGKKVEG 245 (645)
T ss_dssp CEEEEEESSSSEETTCTTCEEEEEEEECTTSCBCCE
T ss_pred EEEEEEcCceeEecCCCcEEEEEEEEEEcCCCeeee
Confidence 556778888888888 8999999999999888876
No 23
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=38.01 E-value=39 Score=30.90 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=29.0
Q ss_pred eeecCceEEEEEeccccccCCCeEEEEEEEeCCCC
Q psy16524 243 TFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSR 277 (453)
Q Consensus 243 ~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ss 277 (453)
+++++.-.+++.|||+--.-||.|..++.|+|-++
T Consensus 1 ~~a~~~~~I~~~lDKT~~~VGdII~Atv~vnnI~n 35 (166)
T 2bm3_A 1 MASDKASSIELKFDRNKGEVGDILIGTVRINNIKN 35 (166)
T ss_dssp ----CCCEEEEEESCSCCCTTCEEEEEEEEESCTT
T ss_pred CCcCCCCeEEEEecCcceeeCCEEEEEEEEccccc
Confidence 35667788999999999999999999999999876
No 24
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=37.30 E-value=1.5e+02 Score=32.96 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=46.3
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceEEEEEEeeeeccCCcCCCCCeEEEEEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFY 326 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~yk~~Va~~E~~eG~pV~pgst~~k~~~ 326 (453)
..|++++.+ +...-|+.+.|.+.+.|.|+.. +.+++. -.+...+|+|.-...+...... ..+.|+++-.-.+.
T Consensus 516 ~~v~~~i~~--~~~~iG~df~v~l~~~N~s~~~-~~v~~~--l~a~~v~YtG~~~~~~~~~~~~--~~L~p~~~~~i~~~ 588 (731)
T 1ex0_A 516 SNVDMDFEV--ENAVLGKDFKLSITFRNNSHNR-YTITAY--LSANITFYTGVPKAEFKKETFD--VTLEPLSFKKEAVL 588 (731)
T ss_dssp -CEEEEEEE--CCCBTTCCEEEEEEEEECSSSC-EEEEEE--EEEEEECTTSCEEEEEEEEEEE--EEECTTEEEEEEEE
T ss_pred CCeEEEEec--CCCCCCCCEEEEEEEEECCCCC-EEEEEE--EEEEEEeeCCccccceeEeeEE--EEECCCceEEEEEE
Confidence 347777777 4555699999999999999977 544444 4555555688755544443332 25666655333333
Q ss_pred E
Q psy16524 327 L 327 (453)
Q Consensus 327 L 327 (453)
|
T Consensus 589 i 589 (731)
T 1ex0_A 589 I 589 (731)
T ss_dssp E
T ss_pred E
Confidence 3
No 25
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=37.15 E-value=1.5e+02 Score=28.00 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=51.9
Q ss_pred eeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceEEEEEEeeeeccCCcCCCC
Q psy16524 239 SKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPG 318 (453)
Q Consensus 239 ~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~yk~~Va~~E~~eG~pV~pg 318 (453)
.++.++.+.-|++-+... +.|..-.+.+.+.|.|+..+..+.+.+..-.+ -..+....... . ...|.|+
T Consensus 21 ~~GVLyEd~~iQIg~kse----~~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~---~~~~l~~~~~~---~-~~~I~~~ 89 (247)
T 1kyf_A 21 NNGVLFENQLLQIGLKSE----FRQNLGRMFIFYGNKTSTQFLNFTPTLICADD---LQTNLNLQTKP---V-DPTVDGG 89 (247)
T ss_dssp CCEEEEECSSEEEEEEEE----EETTEEEEEEEEEECSSSCBEEEEEEEECCHH---HHHHEEEEECC---C-CSCBCTT
T ss_pred CceEEEECCCEEEEEEEE----EeCCeEEEEEEEEcCCCCceeeEEEEEecCcc---cCCCeeEecCC---C-CceeCCC
Confidence 356778888888777766 35668899999999999999887776543110 00112211111 1 1258999
Q ss_pred CeEEEEEEEe
Q psy16524 319 AAFTKTFYLV 328 (453)
Q Consensus 319 st~~k~~~L~ 328 (453)
++.++.+.+.
T Consensus 90 ~q~qq~i~v~ 99 (247)
T 1kyf_A 90 AQVQQVVNIE 99 (247)
T ss_dssp CEEEEEEEEE
T ss_pred cEEEEEEEEE
Confidence 9998888773
No 26
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=36.05 E-value=38 Score=36.34 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=32.1
Q ss_pred eeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCcee
Q psy16524 237 LVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSV 280 (453)
Q Consensus 237 e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~V 280 (453)
...|..+++...-.+=+..||.+|.|||++.+.+-..|...+.+
T Consensus 92 ~~~~~v~v~~~~~~~fi~TDr~iYrPGqtV~~r~i~~d~~~~p~ 135 (627)
T 3hrz_A 92 RLEKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKM 135 (627)
T ss_dssp EEEEEEEEECCCSCEEEEESCSEECTTCEECEEEEESCC-----
T ss_pred eEEEEEEEEcCCCcEEEECCCCccCCCCEEEEEEEEECCCCccc
Confidence 33566677776777788999999999999999988888765554
No 27
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=35.72 E-value=52 Score=39.26 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=36.1
Q ss_pred eeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCcee
Q psy16524 237 LVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSV 280 (453)
Q Consensus 237 e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~V 280 (453)
...+..++++....+-+..||.+|.|||+|.+.+-+.|..-+++
T Consensus 112 ~~~~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p~ 155 (1676)
T 3cu7_A 112 SKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKPA 155 (1676)
T ss_dssp EEEEEECEECCCSEEEEEESCSEECTTCEECEEEEEECTTCSCC
T ss_pred eEEEEEEEEcCCCcEEEECCCCccCCCCEEEEEEEEECCCCccc
Confidence 35567788888888999999999999999998888777655543
No 28
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=35.02 E-value=82 Score=34.75 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=36.0
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQF 300 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~y 300 (453)
..+++++.+.... -|+.+.|.+.+.|.|+.. +.+++. -.+...+|+|.-
T Consensus 471 ~~v~~~i~~~~~~--~G~df~v~v~~~N~s~~~-~~v~~~--l~a~~v~YtG~~ 519 (695)
T 1g0d_A 471 GRLQLSIKHAQPV--FGTDFDVIVEVKNEGGRD-AHAQLT--MLAMAVTYNSLR 519 (695)
T ss_dssp -CEEEEEEECCCB--TTCCEEEEEEEEECSSSC-EEEEEE--EEEEEECTTCBC
T ss_pred CCeEEEEEeCCCC--CCCCEEEEEEEEECCCCC-EEEEEE--EEEEEEeeCCcc
Confidence 4578888887777 699999999999999977 544444 455555567764
No 29
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=34.19 E-value=1.7e+02 Score=32.17 Aligned_cols=74 Identities=5% Similarity=0.079 Sum_probs=45.3
Q ss_pred ceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceEEEEE-EeeeeccCCcCCCCCeEEEEEE
Q psy16524 248 KINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYV-ASLETREGCPVTPGAAFTKTFY 326 (453)
Q Consensus 248 pl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~yk~~V-a~~E~~eG~pV~pgst~~k~~~ 326 (453)
.|++++.+.... .-|+.+.|.+.+.|.|+.. +.+++. -.+...+|+|.-...+ ...... ..+.|+.+-.-.+.
T Consensus 472 ~v~~~~~~~~~~-~~G~df~v~v~~~N~s~~~-~~v~~~--l~a~~v~YtG~~~~~~~~~~~~~--~~l~p~~~~~v~~~ 545 (687)
T 2q3z_A 472 GMAMRIRVGQSM-NMGSDFDVFAHITNNTAEE-YVCRLL--LCARTVSYNGILGPECGTKYLLN--LTLEPFSEKSVPLC 545 (687)
T ss_dssp CEEEEEECCSCC-BTTCCEEEEEEEEECSSSC-EEEEEE--EEEEEECTTCCEEEEEEEEEEEE--EEECTTEEEEEEEE
T ss_pred ceEEEEEeCCCC-cCCCCEEEEEEEEECCCCC-EEEEEE--EEEEEEeeCCcccceEeeeeeeE--EEECCCceEEEEEE
Confidence 366666654444 4699999999999999976 544444 4555555688765555 332221 24566655433333
Q ss_pred E
Q psy16524 327 L 327 (453)
Q Consensus 327 L 327 (453)
|
T Consensus 546 i 546 (687)
T 2q3z_A 546 I 546 (687)
T ss_dssp E
T ss_pred E
Confidence 3
No 30
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=33.39 E-value=1.7e+02 Score=28.29 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=50.9
Q ss_pred eeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEEcceEEEEEEeeeeccCCcCCCCC
Q psy16524 240 KGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYVASLETREGCPVTPGA 319 (453)
Q Consensus 240 K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf~g~yk~~Va~~E~~eG~pV~pgs 319 (453)
++.++.+..|++-+... +.|....|.+.+.|.|+.++..+++.+.-..+ -...+........ ..|.|++
T Consensus 48 ~GVLyED~~IQIg~kse----~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~---~~~~l~~~~~~~~----~tI~p~~ 116 (273)
T 3hs8_A 48 NGVLFENQLLQIGLKSE----FRQNLGRMFIFYGNKTSTQFLNFTPTLICADD---LQTNLNLQTKPVD----PTVDGGA 116 (273)
T ss_dssp CEEEEECSSEEEEEEEE----EETTEEEEEEEEEECSSSCBBSCCCEEECCTT---HHHHEEEEECCCC----SCBCTTC
T ss_pred CcEEEeCCcEEEEEEEE----EeCceEEEEEEEEcCCCCcceeEEEEEECCCC---CCcceEEEecCCC----CeECCCC
Confidence 56678888888888763 57889999999999999999887765432100 0001221111111 3688999
Q ss_pred eEEEEEEE
Q psy16524 320 AFTKTFYL 327 (453)
Q Consensus 320 t~~k~~~L 327 (453)
+.++.+.+
T Consensus 117 q~qq~i~v 124 (273)
T 3hs8_A 117 QVQQVVNI 124 (273)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888776
No 31
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=33.28 E-value=71 Score=38.09 Aligned_cols=72 Identities=10% Similarity=0.257 Sum_probs=48.9
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCC-ceeEeEEEEEEEEEEEEEE-cc--eEEEEEEeeeeccCCcCCCCCeEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSR-KSVKNIKCYVVQHCEVTMV-NS--QFSRYVASLETREGCPVTPGAAFT 322 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ss-k~VkkIKv~l~Q~~~v~lf-~g--~yk~~Va~~E~~eG~pV~pgst~~ 322 (453)
.|+.++.+||+. ...||.+.+.+.|.|.+. +.++ ++|.|.-.-.+|+. .+ .+...+ .|.++++-.
T Consensus 826 kpf~v~~~LP~s-v~~GD~~~i~~~V~N~~~~~~~~-v~v~l~~~~~~~~~~~~~~~~~~~v---------~v~a~~~~~ 894 (1661)
T 2b39_A 826 QDFFIDLRLPYS-VVRNEQVEIRAILYNYREAENLK-VRVELLYNPAFCSLATAKKRHQQTI---------TIPARSSVA 894 (1661)
T ss_dssp CSEEEEEECCSC-EESSCEEEEEEEEEECCTTCCEE-EEEEECCCTTEECSSCSSCCCEEEE---------EECTTCEEE
T ss_pred eeEEEEecCCcE-EEeCCEEEEEEEEEcCCCCccEE-EEEEEcCCCCeEeecCCCCcceEEE---------EECCCCcEE
Confidence 688999999985 578999999999999999 8765 56665433333332 11 111122 466777766
Q ss_pred EEEEEee
Q psy16524 323 KTFYLVP 329 (453)
Q Consensus 323 k~~~L~P 329 (453)
-.|.|.|
T Consensus 895 v~f~i~p 901 (1661)
T 2b39_A 895 VPYVIVP 901 (1661)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6777777
No 32
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*
Probab=30.59 E-value=44 Score=36.52 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.3
Q ss_pred EEEEeccccccCCCeEEEEEEEeCCCCcee
Q psy16524 251 LEVTLDREIYYHGEKVAATIVVNNTSRKSV 280 (453)
Q Consensus 251 LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~V 280 (453)
..++.||..|.|||.+.+++.+.|.+.+.-
T Consensus 9 ~~v~tDKA~Y~PGe~V~l~~~l~n~t~~~~ 38 (643)
T 3vmn_A 9 INLTTDKAVYQAGEAVHLNLTLNNTTSLAQ 38 (643)
T ss_dssp CCCEESCSSBCTTSCEEEECEEECCSSSCE
T ss_pred eeeeccccccCCCCeEEEEEEEecccCccc
Confidence 457899999999999999999999887643
No 33
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=30.58 E-value=89 Score=37.28 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=34.4
Q ss_pred eeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCcee
Q psy16524 237 LVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSV 280 (453)
Q Consensus 237 e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~V 280 (453)
...+..+++...-.+-+..||.+|.|||+|.+.+-+.|..-+++
T Consensus 115 ~~~~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p~ 158 (1661)
T 2b39_A 115 QVEKVVLISLQSGYLFIQTDKTIYTPGSTVLYRVFTVDHKLLPV 158 (1661)
T ss_dssp EEEEEEEECCCCCEEEEEESCSEECTTSEEEEEEEEECTTSCCC
T ss_pred EEEEEEEEecCCCcEEEecCCCccCCCCEEEEEEEEECCCCccc
Confidence 34566666655666889999999999999999988888766654
No 34
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=29.13 E-value=67 Score=38.66 Aligned_cols=47 Identities=6% Similarity=0.171 Sum_probs=35.9
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTM 295 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~l 295 (453)
.|+.++.+||+.+ ..||.+.+.+.|-|...+.++ ++|.|...-++|+
T Consensus 812 kpffv~l~LPysv-~rGEq~~l~v~VfNy~~~~~~-V~V~L~~s~~~~~ 858 (1642)
T 3prx_B 812 KVFFIDLQMPYSV-VKNEQVEIRAILHNYVNEDIY-VRVELLYNPAFCS 858 (1642)
T ss_dssp CSEEEECCCCSCE-ETTCCEEEEEEEEECSSSCEE-EEEEECCCTTEEE
T ss_pred CCEEEEccCCCEE-ecCCEEEEEEEEEcCCCCcEE-EEEEEEcCCCeEe
Confidence 3668888999864 699999999999999998765 6666654444444
No 35
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=28.21 E-value=2.2e+02 Score=23.99 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=36.7
Q ss_pred cccCCCeEEEEEEEeCCCCceeEeEEEEEEEEE-EEEE-EcceEEEEEEeeeeccCCcCCCCCeEEEEEEEeec
Q psy16524 259 IYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHC-EVTM-VNSQFSRYVASLETREGCPVTPGAAFTKTFYLVPL 330 (453)
Q Consensus 259 ~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~-~v~l-f~g~yk~~Va~~E~~eG~pV~pgst~~k~~~L~Pl 330 (453)
..+.|+...+++...- ++.+.++++.+.=.. .+.+ |-+. ....+ ..-+||+.+|..+...+.+ |+
T Consensus 28 ~l~rG~~~~i~~~f~~--~~~~~~l~~~v~~~~~g~~ip~p~~-~~daC---~~~~CPl~~G~~~~y~~~~-~v 94 (129)
T 1xwv_A 28 IIHRGKPFTLEALFDA--NQNTKTAKIEIKASLDGLEIDVPGI-DTNAC---HFMKCPLVKGQQYDAKYTW-NV 94 (129)
T ss_dssp EEETTSEEEEEEEEEC--CSCBSCCEEEEEEEETTEEECCCSC-CCBGG---GTSCSSBCTTCEEEEEEEE-EC
T ss_pred EEeCCCeEEEEEEEEC--CCccceEEEEEEEEEcCEEeecCCC-CCCcc---CCccCcccCCEEEEEEEEe-Ee
Confidence 6788999988888663 444566666643211 0111 1011 00011 1125999999998887777 53
No 36
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=27.86 E-value=1e+02 Score=31.31 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=27.2
Q ss_pred EEEEEecccccc----CCCeEEEEEEEeCCCCceeEeEEEEE
Q psy16524 250 NLEVTLDREIYY----HGEKVAATIVVNNTSRKSVKNIKCYV 287 (453)
Q Consensus 250 ~LeasLdK~~Y~----pGE~I~V~v~I~N~Ssk~VkkIKv~l 287 (453)
.|.+.|.|.-|+ +||+|.=.|.|++. .-..++|.+.|
T Consensus 17 ~i~~yl~krdfvd~~~~~d~V~GvV~id~~-~lk~r~v~v~l 57 (393)
T 1g4m_A 17 KLTVYLGKRDFVDHIDLVEPVDGVVLVDPE-YLKERRVYVTL 57 (393)
T ss_dssp SCEEEESCSEEEECSSCBCCEEEEEECCHH-HHTTCEEEEEE
T ss_pred eEEEEeCCceEEEecCCCCEEEEEEEEehh-HhcccEEEEEE
Confidence 345678888887 78999999999877 55556665554
No 37
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=27.24 E-value=79 Score=37.43 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=47.9
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEEEEEEEEEEE-cceEEEEEEeeeeccCCcCCCCCeEEEEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQFSRYVASLETREGCPVTPGAAFTKTF 325 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l~Q~~~v~lf-~g~yk~~Va~~E~~eG~pV~pgst~~k~~ 325 (453)
.|+.++++||+. ..+||.+.+.+.|.|...+.++ ++|.|...-.+++- .+.. ..-..|.+|+.-.-.|
T Consensus 767 kpf~v~~~LP~s-v~rGE~~~l~~~V~N~~~~~~~-v~V~l~~~~~~~~~~~~~~---------~~~v~l~~~~~~~v~f 835 (1451)
T 4acq_A 767 QPFFVELTMPYS-VIRGEAFTLKATVLNYLPKCIR-VSVQLEASPAFLAVPVEKE---------QAPHCICANGRQTVSW 835 (1451)
T ss_dssp CSEEEEEECCSE-EESSSCEEEEEEEEECSSSCEE-EEEEECCCTTEEEEESCSC---------CCCEEECTTEEEEEEE
T ss_pred CCEEEEccCCce-EecCCEEEEEEEEEeccCccEE-EEEEEEcCCCeEeecCCCC---------ceEEEECCCCeEEEEE
Confidence 588999999986 4799999999999999987754 55554433233332 1100 0112467777666677
Q ss_pred EEee
Q psy16524 326 YLVP 329 (453)
Q Consensus 326 ~L~P 329 (453)
.|.|
T Consensus 836 ~v~p 839 (1451)
T 4acq_A 836 AVTP 839 (1451)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7777
No 38
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=26.81 E-value=1.1e+02 Score=36.10 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=36.9
Q ss_pred eeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCceeE
Q psy16524 237 LVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVK 281 (453)
Q Consensus 237 e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk 281 (453)
...|..+++...-.+=+..||.+|.|||++.+.+-.-|..-+++.
T Consensus 92 ~~~~~v~v~~~~~~~fiqTDK~iY~Pgq~V~~rv~~~~~~~~p~~ 136 (1451)
T 4acq_A 92 KKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLN 136 (1451)
T ss_dssp EEEEEEEEECCCCEEEEEESCSEECTTCEEEEEEEEECTTCCBCC
T ss_pred EEEEEEEEEccCccEEEECCCCcCCCCCEEEEEEEEECCCCcCcc
Confidence 345667788877888899999999999999999888887766654
No 39
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=21.46 E-value=2.4e+02 Score=32.57 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=32.8
Q ss_pred CceEEEEEeccccccCCCeEEEEEEEeCCCCceeEeEEEEE
Q psy16524 247 GKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYV 287 (453)
Q Consensus 247 Gpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~VkkIKv~l 287 (453)
.|+.++.+||+ -..+||.+.+.+.|.|.+.+.++ +++.|
T Consensus 664 kp~~v~~~lP~-~v~~Gd~~~l~~~v~N~~~~~~~-v~v~l 702 (1325)
T 2pn5_A 664 QPFYIVENLPY-SIKRGEAVVLQFTLFNNLGAEYI-ADVTL 702 (1325)
T ss_dssp CSEEEEEECCS-EEETTCEEEEEEEEEECSSSCEE-EEEEE
T ss_pred eeEEEEcCCCc-EEEcCCEEEEEEEEEeCCCCcEE-EEEEE
Confidence 58889999996 45799999999999999998865 56665
No 40
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=20.87 E-value=1e+02 Score=37.01 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=32.4
Q ss_pred eeeeeeeeecCceEEEEEeccccccCCCeEEEEEEEeCCCCcee
Q psy16524 237 LVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSV 280 (453)
Q Consensus 237 e~~K~F~~ssGpl~LeasLdK~~Y~pGE~I~V~v~I~N~Ssk~V 280 (453)
...|..+++...-.+=+..||.+|.|||++.+.+-.-|..-+++
T Consensus 114 ~~~k~V~v~~~~~~~FiqTDk~iYrPGqtV~~rvi~~~~~~~p~ 157 (1642)
T 3prx_B 114 RLEKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKM 157 (1642)
T ss_dssp EEEEEEEEECCCCCEEEEESCSEECTTCEEEEEEEECCC-----
T ss_pred eEEEEEEEEcCCCeEEEEcCCCcCCCCCEEEEEEEEEcCCCccc
Confidence 34566778877778888999999999999998887777665543
Done!