RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16524
(453 letters)
>gnl|CDD|215866 pfam00339, Arrestin_N, Arrestin (or S-antigen), N-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with C-terminal domain.
Length = 148
Score = 106 bits (266), Expect = 2e-27
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 8 VTVYLGKRDFIDHLEEVDPIDGVIVVEN-EYLKGRKVFGQIITTYRYGREEDEVMGVKFS 66
T+YL K D + H E P+ G +++ + +K R V + R G EE EVMG+ F
Sbjct: 1 FTIYLDKPDPVYHPGE--PVSGKVLLTTKKPIKARAVKITLKGRARTGWEESEVMGLTFR 58
Query: 67 KEMIVDRGQIVPSTNEKPELTVIQEKLLKK--------LGPNAYPFTFHFPSGAPSSVTL 118
K K QE+L KK G +A+PF+F P P S
Sbjct: 59 K------QIYPTVNYSKETYLDTQERLWKKKDGSNELPAGTHAFPFSFELPPNCPPSFEG 112
Query: 119 QPGDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
QPG G+ + +K + D +K HKR V I+K
Sbjct: 113 QPG--------GIRYEVKVEL-DRPWKKDHKRKKVFTVIRK 144
Score = 28.1 bits (63), Expect = 6.5
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 251 LEVTLDR--EIYYHGEKVAATIVVNNTSRKSVKNIK 284
+ LD+ +Y+ GE V+ +++ + +K
Sbjct: 1 FTIYLDKPDPVYHPGEPVSGKVLLTTKKPIKARAVK 36
>gnl|CDD|214976 smart01017, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain. Arrestins comprise a family of
closely-related proteins that includes beta-arrestin-1
and -2, which regulate the function of beta-adrenergic
receptors by binding to their phosphorylated forms,
impairing their capacity to activate G(S) proteins; Cone
photoreceptors C-arrestin (arrestin-X). which could bind
to phosphorylated red/green opsins; and Drosophila
phosrestins I and II, which undergo light-induced
phosphorylation, and probably play a role in
photoreceptor transduction.
Length = 142
Score = 96.3 bits (240), Expect = 7e-24
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Query: 245 SQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYV 304
G ++LEV+L ++ Y GE + TI + N S+K+VK IK +VQ S
Sbjct: 1 WSGPLSLEVSLPKKGYVPGETIPVTIKITNLSKKTVKKIKVSLVQTVTYV---SSDGPVK 57
Query: 305 ASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLIGEGKC 364
SL + K P+ NKD+ +G LK + S T
Sbjct: 58 RSLAEKSKEKKADRKTLVKELDGGPVLPGNKDKF----EGQLKVPPLPPTSRT------- 106
Query: 365 PSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMNPDP 403
I + Y L+VKL EL+ ++P +
Sbjct: 107 ---CRLIKVEYKLKVKLRLSGKHSELRLELPITIGTVPL 142
>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain.
Length = 136
Score = 74.7 bits (184), Expect = 3e-16
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 33/164 (20%)
Query: 245 SQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNSQFSRYV 304
G ++L V+L ++ Y GE + T+ ++N S K +K IK +VQ
Sbjct: 1 WSGPVSLSVSLPKKGYVPGETIPITVEIDNQSSKKIKKIKISLVQQVTYKAKTPLRRTKN 60
Query: 305 AS--LETREGCPVTPG--AAFTKTFYL-VPLASSNKDRRGIALDGHLKDDDVNLASSTLI 359
+ E V PG F K L +P +L S+
Sbjct: 61 EERVVAKEESGGVEPGSSDKFEKELSLQIPT---------------------SLPPSST- 98
Query: 360 GEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDVPFKLMNPDP 403
++ I +SY L+V + EL+ ++P +
Sbjct: 99 ------TKCKIIKVSYKLKVTVDLSGSHSELRLELPITIGTSPL 136
>gnl|CDD|221105 pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an
enzyme that carries out the first glycosylation step of
hydroxylated Skp1, a ubiquitous eukaryotic protein, in
the cytoplasm.
Length = 321
Score = 37.7 bits (88), Expect = 0.009
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 212 CYATDDDDNILQY-----APPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIYYHGEKV 266
C+A I++ P ++ LP V+ GF F+ G +V D + + GE++
Sbjct: 159 CFAEFTPYGIVKLRSRWITPATQPSPLPQGFVAAGFLFADGSFVRDVPFDPHLLFDGEEI 218
Query: 267 AATI 270
+
Sbjct: 219 LYSA 222
>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member
of the Nudix hydrolase superfamily, show nucleoside
triphosphatase and dinucleoside polyphosphate
pyrophosphatase activities. Like other enzymes belonging
to this superfamily, it requires a divalent cation, in
this case Mg2+, for its activity. It also contains a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. In general,
substrates of nudix hydrolases include intact and
oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 142
Score = 30.2 bits (68), Expect = 1.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 81 NEKPELTVIQEKLLKKLGPNAYPFTFHFPSGA------PSSVTLQPGDEDTGKPLGVEHA 134
NE+ ++ ++QEK K G +H PSGA P ++ E+TG +
Sbjct: 22 NERNDVLLVQEKGGPKKG------LWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF 75
Query: 135 IKTFVG 140
+ T++G
Sbjct: 76 LGTYLG 81
>gnl|CDD|225739 COG3198, COG3198, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 172
Score = 29.9 bits (67), Expect = 1.5
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 335 KDRRGIALDGHLKDDDVNLASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQTDV 394
KD +GI + H +D+ A+ LIG S M + GGE
Sbjct: 46 KDGKGINIQLH-RDN----AARRLIGVAVVISPDMTAAKEFV----------GGEFDGKQ 90
Query: 395 PFKLMNPDPLLADKDKTNALKKSKSIDRARYE 426
P L+ P D+T ALK +++ RA YE
Sbjct: 91 PLNLLLMHPTRPADDQTVALKPAQN-GRAEYE 121
>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General
function prediction only].
Length = 340
Score = 29.2 bits (66), Expect = 4.2
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 21 LEEVD---PIDGVIVVENEYL------KGRKVFGQIITTYRYGREEDEVMGVKFSKEMIV 71
LEEVD P +G +++ YL +GR +Y E EVM +++
Sbjct: 29 LEEVDVPEPGEGQVLLRTLYLSLDPYMRGRM---SDAPSYAPPVELGEVMVGGTVAKVVA 85
Query: 72 DR------GQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDT 125
G IV + E + + L+KL P+ P + + +T G D
Sbjct: 86 SNHPGFQPGDIVVGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDI 145
Query: 126 GKP 128
G+P
Sbjct: 146 GQP 148
>gnl|CDD|176413 cd01818, TIAM1_RBD, Ubiquitin domain of Tiam1 guanine nucleotide
exchange factor. Tiam1 (T lymphoma invasion and
metastasis 1) a guanine nucleotide exchange factor that
activates Rac, is an important regulator of Rho GTPase
functions in tumor cells including regulation of cell
shape and invasiveness in epithelial cells and
fibroblasts. TIAM1 has an RBD (Ras-binding domain)
similar to that of Raf kinase as well as PH (pleckstrin
homology), PDZ, and RhoGEF domains.
Length = 77
Score = 27.1 bits (60), Expect = 4.5
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 103 PFTFHFPSGAPSSVTLQPGD 122
P P P L+PG
Sbjct: 1 PSWVCLPDNQPVLTYLRPGM 20
>gnl|CDD|222645 pfam14280, DUF4365, Domain of unknown function (DUF4365). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria,
eukaryotes and viruses. Proteins in this family are
typically between 182 and 530 amino acids in length.
There is a single completely conserved residue D that
may be functionally important.
Length = 139
Score = 28.1 bits (63), Expect = 5.7
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 27 IDGVI--VVENEYLKGRKVFGQIITTYRYGREEDEV 60
IDG I V ++ GR + Q+ + Y EE
Sbjct: 29 IDGEIEIVDDDGEATGRLIAVQLKSGESYFYEETGG 64
>gnl|CDD|213743 TIGR02829, spore_III_AE, stage III sporulation protein AE. A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AE [Cellular processes, Sporulation and
germination].
Length = 381
Score = 28.8 bits (65), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 362 GKCPSEAMGIVISYSLRVKLSCGTLG 387
GK ++A+ V SL +K + GTLG
Sbjct: 283 GKMLTDAVDTVAGASLLLKNAIGTLG 308
>gnl|CDD|221239 pfam11812, DUF3333, Domain of unknown function (DUF3333). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria. This presumed
domain is typically between 116 to 159 amino acids in
length.
Length = 155
Score = 28.0 bits (63), Expect = 6.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 235 SSLVSKGFT-FSQGKINLEVTLDREIYY 261
S+VS G+ F Q +I LEVTLD E+
Sbjct: 35 GSIVSNGYGAFQQTEITLEVTLDEEVLD 62
>gnl|CDD|238872 cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 191
Score = 28.0 bits (63), Expect = 6.8
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 138 FVGDSIDEKGHKRSSVALAIKKCYVVQHCEVTMVNSQFSRYVAS--LETREVLADKDKTN 195
F+G+SI ++G V + Y ++T N +S S R+ K +
Sbjct: 6 FIGNSITDRGGYVGYVETYLAARY--PELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPD 63
Query: 196 AL 197
+
Sbjct: 64 VV 65
>gnl|CDD|227393 COG5061, ERO1, Oxidoreductin, endoplasmic reticulum
membrane-associated protein involved in disulfide bond
formation [Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 425
Score = 28.3 bits (63), Expect = 9.6
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 158 KKCYVVQHCEVTMVNSQFSRYVASLETREVLADKDKTNALKKSKSIDRARYENSCYATDD 217
KC + +C V + Y++ LE E S I R YE +C+ T
Sbjct: 118 SKCPDLSYCYVDNKSIFNDVYISLLENPERFTGY----KGNHSAEIWRKIYEQNCFDTLL 173
Query: 218 DDNILQYAPPSRGRRLPSSLVSKGFTFS 245
P +R+ LVS GF S
Sbjct: 174 P-------PTLLEKRMFYRLVS-GFHAS 193
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.383
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,881,387
Number of extensions: 2211674
Number of successful extensions: 1676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 24
Length of query: 453
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 353
Effective length of database: 6,502,202
Effective search space: 2295277306
Effective search space used: 2295277306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)