RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16524
(453 letters)
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment,
SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A
1ayr_A
Length = 380
Score = 330 bits (847), Expect = e-110
Identities = 145/418 (34%), Positives = 214/418 (51%), Gaps = 69/418 (16%)
Query: 2 TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVM 61
S VT+YLGKRD+IDH+E V+P+DGV++V+ E +KG++V+ + +RYG+E+ +VM
Sbjct: 26 ISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVM 85
Query: 62 GVKFSKEMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPG 121
G+ F +++ + Q+ P T +QE L+KKLG N YPF FP P SV LQP
Sbjct: 86 GLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPA 145
Query: 122 DEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKCYVVQHCEVTMVNSQFSRYVAS 181
+D G K C V +
Sbjct: 146 PQDVG-------------------------------KSCGV--------------DFEIK 160
Query: 182 LETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLVSKG 241
++ D+ ++S +Q+AP G + P + S
Sbjct: 161 AFATHSTDVEE-----------DKIPKKSSVRLLIRK---VQHAPRDMGPQ-PRAEASWQ 205
Query: 242 FTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNS-QF 300
F S + L V+L +EIYYHGE + T+ V N++ K+VK IK V Q V + +S +
Sbjct: 206 FFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYY 265
Query: 301 SRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLIG 360
+ VA+ E +E P P ++ TKT LVPL ++N++RRGIALDG +K +D NLASST+I
Sbjct: 266 IKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIK 323
Query: 361 EGKCPSEAMGIVISYSLRVKLSCGTLGG-----ELQTDVPFKLMNPDPLLADKDKTNA 413
EG MGI++SY ++VKL+ L G E+ T+VPF+LM+P P D K +A
Sbjct: 324 EGID-KTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDTAKESA 380
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing,
signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11
b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A
2wtr_B 3gc3_A 3p2d_A
Length = 393
Score = 322 bits (827), Expect = e-107
Identities = 154/453 (33%), Positives = 231/453 (50%), Gaps = 80/453 (17%)
Query: 2 TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVM 61
S GK+TVYLGKRDF+DH++ V+P+DGV++V+ EYLK R+V+ + +RYGRE+ +V+
Sbjct: 12 ASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVL 71
Query: 62 GVKFSKEMIVDRGQIVP-STNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQP 120
G+ F K++ V Q P + +K LT +QE+L+KKLG +AYPFTF P P
Sbjct: 72 GLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPC------ 125
Query: 121 GDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKCYVVQHCEVTMVNSQFSRYVA 180
SV L + C V Y
Sbjct: 126 -------------------------------SVTLQPGPEDTGKACGV--------DYEV 146
Query: 181 SLETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLVSK 240
E L +K + K S+ +QYAP G + P++ ++
Sbjct: 147 KAFCAENLEEK-----IHKRNSVRLVI------------RKVQYAPERPGPQ-PTAETTR 188
Query: 241 GFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMVNS-Q 299
F S ++LE +LD+EIYYHGE ++ + V N + K+VK IK V Q+ ++ + N+ Q
Sbjct: 189 QFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQ 248
Query: 300 FSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLI 359
+ VA E + V P + F K + L P ++N+++RG+ALDG LK +D NLASSTL+
Sbjct: 249 YKCPVAMEEADD--TVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL 306
Query: 360 GEGKCPSEAMGIVISYSLRVKL--SCGTLGG-----ELQTDVPFKLMNPDPLLADKDKTN 412
EG E +GI++SY ++VKL S G L G ++ ++PF LM+P P +
Sbjct: 307 REG-ANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKP-----KEEP 360
Query: 413 ALKKSKSIDRARYENSCYATDDDDNIVFEDFAR 445
++ + N +DD+IVFEDFAR
Sbjct: 361 PHREVPEHETPVDTNLIELDTNDDDIVFEDFAR 393
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 306 bits (785), Expect = e-101
Identities = 134/460 (29%), Positives = 221/460 (48%), Gaps = 99/460 (21%)
Query: 2 TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVM 61
T K+++YLGKRDF+DH+E V+P+DGV++++ EYLK RKVF + +RYGR++ +++
Sbjct: 11 TCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLI 70
Query: 62 GVKFSKEMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPG 121
G+ F K++ Q+ P ++P LT +QEKL+KKLG +AYPF F + P
Sbjct: 71 GMSFRKDLYSLATQVYPPETKEP-LTPLQEKLMKKLGAHAYPFCFKMGTNLPC------- 122
Query: 122 DEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKKCYVVQHCEVTMVNSQFSRYVAS 181
SV L + C V +
Sbjct: 123 ------------------------------SVTLQPGPDDTGKSCGV--------DFEVK 144
Query: 182 LETREVLADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAPPSRGRRLPSSLVSKG 241
E L +K K++ + +Q+AP + G P + +++
Sbjct: 145 AFCAENLEEKIH----KRN-------------SVQLVIRKVQFAPANLGVA-PKTEITRQ 186
Query: 242 FTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEVTMV-NSQF 300
F S ++LE +LD+EIYYHGE + + +NNT+ K VK IK V Q +V + ++
Sbjct: 187 FMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKY 246
Query: 301 SRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVNLASSTLIG 360
+ V + ET + V + +KTF + P+ ++N+++RG+ALDG LK +D NLAS+T+I
Sbjct: 247 VKTVCAEETND--TVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTVIR 304
Query: 361 EGKCPSEAMGIVISYSLRVKLSCGTLG-------GELQTDVPFKLMNPDPLLADKDKTNA 413
G E +GI++SY ++V L G ++ ++P LM+P P
Sbjct: 305 PGM-DKEVLGILVSYKVKVHLVVARGGILGDLTSSDVAVELPLTLMHPKP---------- 353
Query: 414 LKKSKSIDRARYENSCYATDDDDNIVFEDFARLRLNEPDE 453
S +++I+ E+FAR +L+ +
Sbjct: 354 --------------SDDKPRSEEDIIIEEFARQKLDGEKD 379
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 8e-05
Identities = 68/372 (18%), Positives = 121/372 (32%), Gaps = 115/372 (30%)
Query: 26 PIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVMGV-KFSKEMIVDRGQIVPSTNEKP 84
P+ GVI + + Y+ K+ G + G + G S+ ++ + T+
Sbjct: 239 PLIGVIQLAH-YVVTAKLLG-----FTPGELRSYLKGATGHSQGLVT--AVAIAETDSWE 290
Query: 85 ELTVIQEKLLKKL------GPNAYPFTFHFPSGAPSSVTLQPGDEDTGKP---LGVEHAI 135
V K + L AYP + P S+ + + G P L + +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYP-----NTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 136 KTFVGDSIDE-----KGHKRSSVALAIKKCYVVQHCEVTMVNS--QF--SRYVASLETRE 186
+ V D +++ K+ ++L VN S SL
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISL---------------VNGAKNLVVSGPPQSLYG-- 388
Query: 187 VLADKDKTNALKKSK---SIDRARYENSCYATDDDDNILQYAPPSRGRRLP------SSL 237
L L+K+K +D++R S + R LP S L
Sbjct: 389 -LN-----LTLRKAKAPSGLDQSRIPFS-----------ERKLKFSNRFLPVASPFHSHL 431
Query: 238 VSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTS-----RKSVKNIKCYVVQHCE 292
+ + IN ++ + + ++ + + I V +T R +I +V C
Sbjct: 432 LVP----ASDLINKDL-VKNNVSFNAKDIQ--IPVYDTFDGSDLRVLSGSISERIVD-CI 483
Query: 293 VTM-VNSQFSRYVASLETRE------GCPVTPGAAFTKTFYLVPLASSNKDRRGI----- 340
+ + V + + + + G PG A L L NKD G+
Sbjct: 484 IRLPVK-----WETTTQFKATHILDFG----PGGASG----LGVLTHRNKDGTGVRVIVA 530
Query: 341 -ALDGHLKDDDV 351
LD + DDD
Sbjct: 531 GTLDIN-PDDDY 541
Score = 32.3 bits (73), Expect = 0.45
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 41/115 (35%)
Query: 173 SQF-----SRYVASLETREVL--ADKDKTNAL---------------------KKSKSID 204
SQ Y S ++V AD + +K K I
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI- 1684
Query: 205 RARYENSCYATDDDDNILQYAPPSRGRRLPSSL--VSKGFTFS--QGKINL-EVT 254
R Y + T D + + ++ + S +TF +G ++ + T
Sbjct: 1685 RENYSAMIFETIVDGKL-------KTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Score = 31.2 bits (70), Expect = 0.99
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 16/71 (22%)
Query: 385 TLGGELQTDVPFKLMNPDPLLADKDKT--NALKKSKSIDRARYENSCYATDDDDNIVFED 442
T G + V + NP + T +K K I R Y + T D + E
Sbjct: 1656 TYGFSILDIV---INNP------VNLTIHFGGEKGKRI-RENYSAMIFETIVDGKLKTEK 1705
Query: 443 FARLRLNEPDE 453
E +E
Sbjct: 1706 I----FKEINE 1712
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 70/500 (14%), Positives = 145/500 (29%), Gaps = 129/500 (25%)
Query: 19 DHLEEVDPIDGVIVVENEYLKGRKVFGQ---IITTYRYGREEDEVMGVKFSKEMI-VDRG 74
L E+ P V++ G G+ + + K ++ ++
Sbjct: 142 QALLELRPAKNVLID------GVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLNLK 190
Query: 75 QIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHA 134
N + + +KLL ++ PN D + L + H+
Sbjct: 191 N----CNSPETVLEMLQKLLYQIDPN----------------WTSRSDHSSNIKLRI-HS 229
Query: 135 IKTFVGDSIDEKGHKRSSVAL-------AIK----KCYVVQHCEVTMVNSQFSRYVASLE 183
I+ + + K ++ + L A C ++ +T Q + ++++
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAAT 285
Query: 184 TREV-LADKDKTNALKKSKSIDRARYENSCYATDDDDNILQYAP-------------PSR 229
T + L T + KS+ +Y + C D +L P +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSL-LLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 230 GRRLPSSLVSKGFTFSQGKIN-LEVTLDREIYYH------GEKV-AATIVV--NNTSRKS 279
K T + +N LE R+++ + + + + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 280 VKNIKCYVVQHCEV-TMVNSQ---FSRYVASLETREGCPVTPGAAFTKTF---YLVPLAS 332
V + V ++V Q + + S+ + A ++ Y +P
Sbjct: 404 VMVV----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 333 SNKDRRGIALDG--------HLK----DDDVNLASSTLIGEGKCPSEAMGIVISYS-LRV 379
+ D LD HLK + + L + + + L
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--------------VFLDFRFLEQ 505
Query: 380 KL-----SCGTLGGELQTDVPFKLMNPDPLLADKDKTNALKKSKSID-RARYENSCYATD 433
K+ + G L T K P + D D + +D + E + +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYK--PYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 434 DDDNIVFEDFARLRLNEPDE 453
+ D R+ L DE
Sbjct: 564 ------YTDLLRIALMAEDE 577
Score = 38.3 bits (88), Expect = 0.006
Identities = 42/387 (10%), Positives = 106/387 (27%), Gaps = 106/387 (27%)
Query: 157 IKKCY--VVQHCEVTMVNSQFSRYVASLETREVLADKDKTNALKKSKSIDRARY------ 208
+ Y ++ E V++ + V + + +L+ ++ + + ++
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 209 ---ENSCY-----ATDDDDNIL------QYAPPSRGRRLPSSLVSKGFT----FSQGKIN 250
E + L + PS R+ + + F++ ++
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 251 ------------LEVTLDREIYYHGEK-----VAATIVVNNTSRKSVKNIKCY--VVQHC 291
LE+ + + G A V + + + K + +++C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 292 ---EVTMVNSQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKD 348
E + Q L + T + + L + + RR + +
Sbjct: 193 NSPETVLEMLQ------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 349 ----DDV---------NLASSTLI------------------------GEGKCPSEAMGI 371
+V NL+ L+ P E +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 372 VISYSLRVKLSCGTLGGELQTDVPFKLMNPDPLLAD--KDKTNALKKSKSIDRARYEN-- 427
++ Y + L E+ T P +L ++A+ +D K ++ +
Sbjct: 307 LLKY---LDCRPQDLPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 428 -SCYATDDDDNI--VFEDFARLRLNEP 451
S + +F+ + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAH 386
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.16
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 14/41 (34%)
Query: 82 EKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPS---SVTLQ 119
EK L +Q L KL Y AP+ T++
Sbjct: 18 EKQALKKLQASL--KL----YA-----DDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 0.49
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 127 KPLGVEHAIKTFVGDSIDEKGHKRSSVALAIK 158
K L + ++K + DS + ALAIK
Sbjct: 23 KKL--QASLKLYADDS---------APALAIK 43
Score = 27.2 bits (59), Expect = 7.2
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 24/45 (53%)
Query: 192 DKTNALKKSKSIDRARYENSCYATDDDDNILQ-YAPPSRGRRLPS 235
+K ALKK + S L+ YA S P+
Sbjct: 18 EK-QALKK--------LQAS----------LKLYADDSA----PA 39
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 30.8 bits (70), Expect = 1.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 221 ILQYAPPSRGRRLPSSLVSKGFTFSQGKINL 251
+++Y + P LV KG TF G I++
Sbjct: 251 VIEYKGNASEDARPIVLVGKGLTFDSGGISI 281
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis,
developmental protein, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; 2.00A {Rattus
norvegicus}
Length = 405
Score = 30.7 bits (68), Expect = 1.2
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 163 VQHCEVTMVNSQFSRYVASLETREVLADKDKTNALKKSKSIDRARYENSCYATDDD---- 218
++ ++ Q YV + E+ A K A+ Y Y +D
Sbjct: 125 LEAKSCHILLDQLGTYVFTGESYSRSAVKRLQLAIFAPALCTSLEYSLRVYCLEDTPAAL 184
Query: 219 DNILQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDR 257
+L+ G + K F NL ++L
Sbjct: 185 KEVLELERTLGGYLVEE---PKPLLFKDSYHNLRLSLHD 220
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 3.8
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 183 ETREVLADKDKTNALKKSKSIDRARYE 209
E R+ L + D + + + + ++A+ +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKD 119
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 28.8 bits (65), Expect = 4.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 221 ILQYAPPSRGRRLPSSLVSKGFTFSQGKINL 251
+ Y P V KG TF G I++
Sbjct: 231 EIHYKGSPNASEPPLVFVGKGITFDSGGISI 261
>2c9e_A Peridinin-chlorophyll A protein; photosynthesis, carotenoids,
chloroplast, light harvesting P light-harvesting
polypeptide; HET: CL1 PID DGD; 2.10A {Amphidinium
carterae}
Length = 327
Score = 28.4 bits (62), Expect = 4.8
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 95 KKLGPNAYPFTFHFPSGAPSSVTLQPGDEDTGKPLGVEHAIKTFV--GDSIDEK------ 146
K+ YP F G S++ D G P A++ + G ++D K
Sbjct: 8 KRFSDATYPIAEKFDWGGSSAIAKYIADASAGNPRQAALAVEKLLEVGLTMDPKLVRAAV 67
Query: 147 -GHKRSSVALAIKKCYVVQHCEVTMVNSQFSRYVASLETREVLA 189
H ++ + + + VN +R +AS + ++ A
Sbjct: 68 EAHSKALDSAKKNAKLMASKEDFAAVNEALARMIASADKQKFAA 111
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like
hydrolase, structural GE joint center for structural
genomics, JCSG; 2.20A {Burkholderia xenovorans}
Length = 231
Score = 28.2 bits (62), Expect = 4.9
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 4 FPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENE---YLKGRKVFGQIITTYRYGR 55
G+V +Y+ K +D + E P ++V+++ +K +G +TT +
Sbjct: 138 VEGRVLIYIHKELMLDQVMECYPARHYVMVDDKLRILAAMKKAWGARLTTVFPRQ 192
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 28.1 bits (63), Expect = 6.5
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 221 ILQYAPPSRGRRLPSSLVSKGFTFSQGKINL 251
+L++ R LV KG TF G +NL
Sbjct: 245 VLKWNGGGDARPY--VLVGKGITFDTGGVNL 273
>2o2z_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus
halodurans} PDB: 2hzb_A
Length = 323
Score = 28.0 bits (62), Expect = 6.8
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 34 ENEYLKGRKVFGQIITTYRYGREEDEVMGVKFSKEMIVDRGQIVPSTNEKPELTVIQE 91
L G + ++ D G+ +++ RG+++P++N L E
Sbjct: 82 NGNGLSGHSLGNLLLAGM-TSITGDFARGISEMSKVLNVRGKVLPASNRSIILHGEME 138
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.9 bits (63), Expect = 8.2
Identities = 24/130 (18%), Positives = 34/130 (26%), Gaps = 48/130 (36%)
Query: 171 VNSQFSRYVASLETREVLAD----------------KDKTNALKKSKSIDRARYENSCYA 214
VN ++A E RE+LA + + +D
Sbjct: 1136 VN--LFTFLAE-EVREILAGLGFRSLNEVIGRTDLLHQVSRGAEHLDDLDLNP------- 1185
Query: 215 TDDDDNILQYAPPSRGRRLPSSLVSKGFTFSQGKINLEVTLDREIY-------YHGEKVA 267
L P R + QG+ + TLD I GEK+
Sbjct: 1186 ------RLAQVDPGENAR---------YCTLQGRNEVPDTLDARIVADARPLFEEGEKMQ 1230
Query: 268 ATIVVNNTSR 277
NT R
Sbjct: 1231 LAYNARNTQR 1240
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 27.8 bits (62), Expect = 8.3
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 221 ILQYAPPSRGRRLPSSLVSKGFTFSQGKINL 251
+L + P + +LV KG + G + +
Sbjct: 235 VLSHEVPGSTEHI--ALVGKGVVYDTGGLQI 263
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 27.7 bits (62), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 221 ILQYAPPSRGRRLPSSLVSKGFTFSQGKINL 251
+L Y + + P LV KG TF G I+L
Sbjct: 249 VLNYQGGKKADK-PFVLVGKGITFDTGGISL 278
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 27.8 bits (62), Expect = 9.6
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 221 ILQYAPPSRGRRLPSSLVSKGFTFSQGKINL 251
L Y P + SLV KG + G + L
Sbjct: 272 TLLYTPKGTPVK-KVSLVGKGIVYDCGGLAL 301
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.383
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,895,316
Number of extensions: 419957
Number of successful extensions: 874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 33
Length of query: 453
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 356
Effective length of database: 3,993,456
Effective search space: 1421670336
Effective search space used: 1421670336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)