RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16524
         (453 letters)



>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 171

 Score =  244 bits (626), Expect = 1e-80
 Identities = 83/159 (52%), Positives = 115/159 (72%), Gaps = 1/159 (0%)

Query: 2   TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVM 61
            S  GK+TVYLGKRDF+DH++ V+P+DGV++V+ EYLK R+V+  +   +RYGRE+ +V+
Sbjct: 8   ASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVL 67

Query: 62  GVKFSKEMIVDRGQIVPSTNE-KPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQP 120
           G+ F K++ V   Q  P   E K  LT +QE+L+KKLG +AYPFTF  P   P SVTLQP
Sbjct: 68  GLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQP 127

Query: 121 GDEDTGKPLGVEHAIKTFVGDSIDEKGHKRSSVALAIKK 159
           G EDTGK  GV++ +K F  ++++EK HKR+SV L I+K
Sbjct: 128 GPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRK 166


>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 173

 Score =  242 bits (620), Expect = 8e-80
 Identities = 71/161 (44%), Positives = 101/161 (62%), Gaps = 3/161 (1%)

Query: 2   TSFPGKVTVYLGKRDFIDHLEEVDPIDGVIVVENEYLKGRKVFGQIITTYRYGREEDEVM 61
            S    VT+YLGKRD+IDH+E V+P+DGV++V+ E +KG++V+  +   +RYG+E+ +VM
Sbjct: 7   ISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVM 66

Query: 62  GVKFSKEMIVDRGQIVPSTNEKPELTVIQEKLLKKLGPNAYPFTFHFPSGAPSSVTLQPG 121
           G+ F +++   + Q+ P        T +QE L+KKLG N YPF   FP   P SV LQP 
Sbjct: 67  GLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPA 126

Query: 122 DEDTGKPLGVEHAIKTFVGDSID---EKGHKRSSVALAIKK 159
            +D GK  GV+  IK F   S D   +K  K+SSV L I+K
Sbjct: 127 PQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRK 167


>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 211

 Score =  196 bits (499), Expect = 3e-61
 Identities = 88/223 (39%), Positives = 126/223 (56%), Gaps = 29/223 (13%)

Query: 234 PSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEV 293
           P +  S  F  S   + L V+L +EIYYHGE +  T+ V N++ K+VK IK  V Q   V
Sbjct: 6   PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNV 65

Query: 294 TMVNS-QFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVN 352
            + +S  + + VA+ E +E  P  P ++ TKT  LVPL ++N++RRGIALDG +K +D N
Sbjct: 66  VLYSSDYYIKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTN 123

Query: 353 LASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLGGELQ-----TDVPFKLMNPDPLLAD 407
           LASST+I EG      MGI++SY ++VKL+   L GEL      T+VPF+LM+P P    
Sbjct: 124 LASSTIIKEGIDK-TVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQP---- 178

Query: 408 KDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFARLRLNE 450
                              ++   +  D+N VFE+FAR  L +
Sbjct: 179 ----------------EDPDTAKESFQDENFVFEEFARQNLKD 205


>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 218

 Score =  187 bits (475), Expect = 2e-57
 Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 16/220 (7%)

Query: 234 PSSLVSKGFTFSQGKINLEVTLDREIYYHGEKVAATIVVNNTSRKSVKNIKCYVVQHCEV 293
           P++  ++ F  S   ++LE +LD+EIYYHGE ++  + V N + K+VK IK  V Q+ ++
Sbjct: 7   PTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADI 66

Query: 294 TMV-NSQFSRYVASLETREGCPVTPGAAFTKTFYLVPLASSNKDRRGIALDGHLKDDDVN 352
            +   +Q+   VA  E  +     P + F K + L P  ++N+++RG+ALDG LK +D N
Sbjct: 67  CLFNTAQYKCPVAMEEADDTVA--PSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN 124

Query: 353 LASSTLIGEGKCPSEAMGIVISYSLRVKLSCGTLG-------GELQTDVPFKLMNPDPLL 405
           LASSTL+ EG    E +GI++SY ++VKL     G        ++  ++PF LM+P P  
Sbjct: 125 LASSTLLREG-ANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKP-- 181

Query: 406 ADKDKTNALKKSKSIDRARYENSCYATDDDDNIVFEDFAR 445
               +    ++    +     N      +DD+IVFEDFAR
Sbjct: 182 ---KEEPPHREVPEHETPVDTNLIELDTNDDDIVFEDFAR 218


>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 120

 Score = 25.7 bits (56), Expect = 6.7
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 110 SGAPSSVTLQPGDEDTG 126
           +G  S + + P  E TG
Sbjct: 19  TGEYSKLIIHPEKEGTG 35


>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
           aggregans [TaxId: 54254]}
          Length = 481

 Score = 26.3 bits (57), Expect = 8.1
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 92  KLLKKLGPNAYPFTFH----FPSGAPSSVTLQPGDED-TGKPLGVEHAIKTFVGDSIDEK 146
            L +KLG N           FP    +       DE+ +   + V+      + +  +++
Sbjct: 67  DLAEKLGVNTIRVGVEWSRIFPKPTFNVKVPVERDENGSIVHVDVDDKAVERLDELANKE 126

Query: 147 G 147
            
Sbjct: 127 A 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,658,439
Number of extensions: 77828
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 8
Length of query: 453
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,199,356
Effective search space: 437764940
Effective search space used: 437764940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)