RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16526
(422 letters)
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 33.5 bits (76), Expect = 0.042
Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 321 ISQNDQKILKQNVSVVFHSAATVKFDEALK---LSVTINMLGTKRLVELCHEMTHLEALI 377
I+ + + L V ++H A+ + ++ N +GT ++ L L+
Sbjct: 54 INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR--VGARLL 111
Query: 378 HVSTA--YCNCDREEVRE--IIYSPPYDPQKIIETMEWMDDSLV 417
ST+ Y + + E + P P+ + + + +++
Sbjct: 112 LASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMC 155
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 64
Score = 26.2 bits (58), Expect = 1.5
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 185 YFSTQEWRFLDDNVREL 201
F+ +EW LD + + L
Sbjct: 16 NFTEEEWDLLDSSQKRL 32
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 57
Score = 25.8 bits (57), Expect = 2.0
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 383 YCNCDREEVREIIYS-PPYDPQKIIE 407
+C C +E I + Q +IE
Sbjct: 1 HCPCSKERFETAILGLGKKEIQDMIE 26
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium
meliloti [TaxId: 382]}
Length = 79
Score = 25.9 bits (57), Expect = 2.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 DREEVREIIYSPPYD 401
+EE REI+Y PY+
Sbjct: 61 SKEESREIVYGMPYE 75
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 27.8 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 66 DIVINLMICAAWKTAVKYKNSNGAQGITVYN-CCTGQ 101
+ V++ +I + K + GA GI V CCTG
Sbjct: 259 NPVLSDIIVSVSKEMENEARAAGATGINVVGICCTGN 295
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 27.4 bits (60), Expect = 3.1
Identities = 8/77 (10%), Positives = 21/77 (27%)
Query: 339 SAATVKFDEALKLSVTINMLGTKRLVELCHEMTHLEALIHVSTAYCNCDREEVREIIYSP 398
F +++++ +T + K+ E+ L + E E
Sbjct: 20 YNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKA 79
Query: 399 PYDPQKIIETMEWMDDS 415
E ++ +
Sbjct: 80 SPKVVITREELQKLQGQ 96
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
sapiens), 1B [TaxId: 9606]}
Length = 297
Score = 27.4 bits (60), Expect = 3.2
Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Query: 28 AGWVDNYNGPTGIIAAAGK-----GFFRTMLCHENKVADLVPVDIVINLMICAA--WKTA 80
A + I G G F M+ + ++ ++ + A W
Sbjct: 68 ASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK 127
Query: 81 VKYKNSNGAQGITVYNCCTGQRNPISWKQFVNYSFESMRQNPLSHITWYPDGQCRSNPIS 140
+ + + + ++ + +Q + + + H Y P S
Sbjct: 128 EEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHF-HYTTWPDFGVPES 186
Query: 141 NAMCVFLLHR 150
A + L +
Sbjct: 187 PASFLNFLFK 196
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 169
Score = 26.5 bits (58), Expect = 4.8
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 218 TEIDWPKYIANYVLGIRTFIFKEQASSLPQARKRLYKMLWIHRLSKLLMILLVWRLLMLR 277
+ K + ++ ++ LP +++ I R+ + + L +
Sbjct: 48 LYLKQQKGAGDASDYATLVLYAKRFEDLPI----IHRAGDIIRVHRATLRLYNGQRQFNA 103
Query: 278 SSVARSSWHLFIDLLFDQLRQERSNELAKIKPILGDITEPELGISQNDQKILKQ 331
+ SSW LF + QE +N+ A + I +N+ IL+
Sbjct: 104 NVFYSSSWALF-STDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQN 156
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 25.5 bits (56), Expect = 4.9
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 318 ELGISQNDQKILKQNVSVVFHSAATVKFDEALKLSVTINMLGT-KRLVELCHEMTHLEAL 376
+ G+S D +L Q VF+ +E K+ + + RLVE +E+ LEAL
Sbjct: 32 KQGLSGED--VLVQMHKEVFNL----PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEAL 85
Query: 377 IH 378
+
Sbjct: 86 LA 87
>d2i5nc1 a.138.1.2 (C:1-332) Photosynthetic reaction centre
(cytochrome subunit) {Rhodopseudomonas viridis [TaxId:
1079]}
Length = 332
Score = 26.1 bits (57), Expect = 7.8
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 54 CH--ENKVADLVPVDIVINLMICAAWKTAVKYKNSNGAQGITVYNCCTGQRNP 104
CH N ++ +V M+ + G+T Y C G P
Sbjct: 90 CHDENNLASEAKYPYVVARRMLEMTRAINTNWTQHVAQTGVTCYTCHRGTPLP 142
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 26.5 bits (58), Expect = 8.0
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 216 DVTEIDWPKYIAN----YVLGIRTFIFKEQASSLPQARKRLYKMLWIHR 260
+ + P + + + + A++ LY+ML +R
Sbjct: 326 EHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQQYLYRMLGRYR 374
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.418
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,621,709
Number of extensions: 75942
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 15
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.1 bits)