BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16527
         (562 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 34 DICRICHCEVTPEASPDVSPAYC 56
          DICRICHCE   E SP ++P +C
Sbjct: 16 DICRICHCEGDDE-SPLITPCHC 37


>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
           Kinase Loc340156.
 pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
           Kinase Loc340156
          Length = 373

 Score = 28.9 bits (63), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 291 LHIFFNEENRICVQKDEKQSRLVDY 315
           LH+    EN +CV +D KQ +++D+
Sbjct: 209 LHLDLKPENILCVNRDAKQIKIIDF 233


>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
 pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
          Length = 195

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 213 APTPKVS----GVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAPAPSYV 268
           +P P V+    G +Y+  AP+  +L   + +    GC ++ V+H   P     AP P  +
Sbjct: 123 SPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARP----GAPPPQPL 178

Query: 269 DPSWDEDMMSNTK 281
           D        +NT+
Sbjct: 179 DLQHRAQAGANTR 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,388,157
Number of Sequences: 62578
Number of extensions: 730346
Number of successful extensions: 903
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 5
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)