BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16527
(562 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 123/222 (55%), Gaps = 47/222 (21%)
Query: 16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSH 75
++P S+TS SN DICRICHCE E SP ++P +C L + AC
Sbjct: 57 TAPVSAFSRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI- 111
Query: 76 PTSDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWS 131
+SD C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WS
Sbjct: 112 KSSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWS 168
Query: 132 LYVLIERTVDEI----YTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAY 187
LYVLI+RT +EI TGILEWPFW KL+VV IGFTGG++FMY+QCK YL + +R KAY
Sbjct: 169 LYVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAY 228
Query: 188 NSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
N VIYVQN PE
Sbjct: 229 NR-------------------------------VIYVQNCPE 239
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 124/232 (53%), Gaps = 54/232 (23%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
+S++ + DICRICHCE E SP ++P C L + C +SD C
Sbjct: 68 TSVTPSNQDICRICHCEGDDE-SPLITPCRCT--GSLHFVHQTCLQ-QWIKSSDTRCCEL 123
Query: 85 ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 124 CKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 180
Query: 142 EIY----TGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
EI TGILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN
Sbjct: 181 EIRQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWRRLKAYNR-------- 232
Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAP--------EKPSLPSPQLAMK 241
VIYVQN P EKP+LP P K
Sbjct: 233 -----------------------VIYVQNCPETSKRNIFEKPALPEPNFESK 261
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 119/212 (56%), Gaps = 46/212 (21%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
+S++ + DICRICHCE E SP ++P +C L + AC +SD C
Sbjct: 70 TSITPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI-KSSDTRCCEL 125
Query: 85 ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 126 CKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 182
Query: 142 EI----YTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
EI TGILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN
Sbjct: 183 EIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNR-------- 234
Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
VIYVQN PE
Sbjct: 235 -----------------------VIYVQNCPE 243
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 118/212 (55%), Gaps = 46/212 (21%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
+S++ + DICRICHCE E SP ++P +C L + AC +SD C
Sbjct: 43 TSVTPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI-KSSDTRCCEL 98
Query: 85 ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 99 CKFEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 155
Query: 142 EIYTG----ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
EI G ILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN
Sbjct: 156 EIKMGQNNGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNR-------- 207
Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
VIYVQN PE
Sbjct: 208 -----------------------VIYVQNCPE 216
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 118/212 (55%), Gaps = 46/212 (21%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
+S++ + DICRICHCE E SP ++P +C L + AC +SD C
Sbjct: 43 TSVTPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI-KSSDTRCCEL 98
Query: 85 ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 99 CKFEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 155
Query: 142 EIYTG----ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
EI G ILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN
Sbjct: 156 EIRMGQNNGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNR-------- 207
Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
VIYVQN PE
Sbjct: 208 -----------------------VIYVQNCPE 216
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 117/204 (57%), Gaps = 35/204 (17%)
Query: 13 LNRSSPDRCSSQTSSLSS--------------------NGFDICRICHCEVTPEASPDVS 52
LN SP R +S++S++S + DICRICHCE E SP ++
Sbjct: 37 LNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCE-GDEESPLIT 95
Query: 53 PAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEHLEMTG 108
P C L + +C +SD C F + KP +R WE L+MT
Sbjct: 96 PCRCT--GTLRFVHQSCLH-QWIKSSDTRCCELCKYDFIMETKLKP---LRKWEKLQMTT 149
Query: 109 MERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIY----TGILEWPFWIKLIVVVIGFT 164
ERRK+ C+V FH +A+TCV+WSLYVLI+RT +EI G+LEWPFW KL+VV IGFT
Sbjct: 150 SERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFT 209
Query: 165 GGVVFMYIQCKAYLHICQRWKAYN 188
GG+VFMY+QCK Y+ + +R KAYN
Sbjct: 210 GGLVFMYVQCKVYVQLWRRLKAYN 233
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 117/205 (57%), Gaps = 35/205 (17%)
Query: 12 NLNRSSPDRCSSQTSSLSS--------------------NGFDICRICHCEVTPEASPDV 51
LN SP R +S++S++S + DICRICHCE E SP +
Sbjct: 36 TLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCE-GDEESPLI 94
Query: 52 SPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEHLEMT 107
+P C L + +C +SD C F + KP +R WE L+MT
Sbjct: 95 TPCRCT--GTLRFVHQSCLHQWIK-SSDTRCCELCKYDFIMETKLKP---LRKWEKLQMT 148
Query: 108 GMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIY----TGILEWPFWIKLIVVVIGF 163
ERRK+ C+V FH +A+TCV+WSLYVLI+RT +EI G+LEWPFW KL+VV IGF
Sbjct: 149 TSERRKIFCSVTFHVIAVTCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGF 208
Query: 164 TGGVVFMYIQCKAYLHICQRWKAYN 188
TGG+VFMY+QCK Y+ + +R KAYN
Sbjct: 209 TGGLVFMYVQCKVYVQLWRRLKAYN 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,164,868
Number of Sequences: 539616
Number of extensions: 10955348
Number of successful extensions: 25895
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 24868
Number of HSP's gapped (non-prelim): 1044
length of query: 562
length of database: 191,569,459
effective HSP length: 123
effective length of query: 439
effective length of database: 125,196,691
effective search space: 54961347349
effective search space used: 54961347349
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)