Query psy16527
Match_columns 562
No_of_seqs 179 out of 518
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 23:34:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1609|consensus 99.7 1.2E-18 2.7E-23 165.6 -0.4 155 31-189 76-238 (323)
2 PHA02825 LAP/PHD finger-like p 99.7 2.9E-17 6.3E-22 153.4 5.5 83 30-123 5-91 (162)
3 PHA02862 5L protein; Provision 99.6 8E-17 1.7E-21 149.1 3.3 74 33-116 2-82 (156)
4 smart00744 RINGv The RING-vari 99.3 1.6E-13 3.5E-18 105.3 -0.7 46 35-84 1-46 (49)
5 PF12906 RINGv: RING-variant d 99.3 9.2E-14 2E-18 105.8 -2.6 45 36-84 1-45 (47)
6 COG5183 SSM4 Protein involved 99.3 2.5E-12 5.4E-17 142.1 5.2 50 31-84 10-59 (1175)
7 KOG3053|consensus 98.7 4.4E-09 9.5E-14 105.5 1.1 46 30-78 17-63 (293)
8 PF12428 DUF3675: Protein of u 94.3 0.12 2.5E-06 47.3 6.3 52 121-176 65-116 (118)
9 PF13639 zf-RING_2: Ring finge 81.6 0.12 2.6E-06 38.0 -3.0 37 34-78 1-37 (44)
10 PF03904 DUF334: Domain of unk 66.4 15 0.00032 37.6 6.1 23 151-173 196-223 (230)
11 PF12811 BaxI_1: Bax inhibitor 65.9 29 0.00063 36.1 8.3 35 143-181 237-271 (274)
12 PF11793 FANCL_C: FANCL C-term 64.7 2.1 4.5E-05 35.4 -0.1 37 34-75 3-42 (70)
13 PF10864 DUF2663: Protein of u 62.5 30 0.00066 32.7 7.0 19 99-122 11-29 (130)
14 COG5264 VTC1 Vacuolar transpor 62.4 23 0.0005 33.5 6.2 34 111-145 58-91 (126)
15 KOG4580|consensus 60.2 42 0.0009 31.3 7.3 34 111-145 43-76 (112)
16 PF12678 zf-rbx1: RING-H2 zinc 59.4 4 8.7E-05 33.7 0.7 16 63-79 52-67 (73)
17 COG4760 Predicted membrane pro 57.3 33 0.00073 35.3 6.8 36 142-181 238-273 (276)
18 PF11190 DUF2976: Protein of u 55.7 57 0.0012 28.9 7.1 32 139-170 49-80 (87)
19 PF00220 Hormone_4: Neurohypop 53.9 5.1 0.00011 22.8 0.3 7 223-229 2-8 (9)
20 PRK14585 pgaD putative PGA bio 51.3 56 0.0012 31.3 6.8 6 149-154 42-47 (137)
21 PF12576 DUF3754: Protein of u 50.6 1.6E+02 0.0036 27.3 9.7 16 174-189 110-125 (141)
22 KOG3195|consensus 50.6 46 0.00099 33.8 6.4 38 152-189 150-195 (213)
23 PF03839 Sec62: Translocation 50.5 61 0.0013 32.9 7.4 12 157-168 143-154 (224)
24 PF14018 DUF4234: Domain of un 47.5 1.5E+02 0.0033 24.1 8.7 15 124-138 11-25 (75)
25 PF01616 Orbi_NS3: Orbivirus N 44.8 2.5E+02 0.0055 28.3 10.5 17 154-170 132-148 (195)
26 COG3402 Uncharacterized conser 44.2 60 0.0013 31.9 6.0 10 180-189 73-82 (161)
27 PF05915 DUF872: Eukaryotic pr 43.6 74 0.0016 29.1 6.2 28 111-138 41-68 (115)
28 TIGR00540 hemY_coli hemY prote 43.0 38 0.00083 35.1 4.8 15 148-162 37-51 (409)
29 KOG2568|consensus 42.5 1.5E+02 0.0032 33.7 9.5 29 157-185 386-416 (518)
30 PF07243 Phlebovirus_G1: Phleb 42.5 1.3E+02 0.0028 34.3 8.9 12 181-192 477-488 (526)
31 PF04290 DctQ: Tripartite ATP- 42.2 2.2E+02 0.0048 24.4 9.1 18 146-163 99-116 (133)
32 PF11947 DUF3464: Protein of u 42.2 74 0.0016 30.7 6.2 38 111-156 63-100 (153)
33 PF08006 DUF1700: Protein of u 39.9 2.4E+02 0.0052 26.5 9.2 35 154-189 142-176 (181)
34 PF13829 DUF4191: Domain of un 39.9 99 0.0022 31.6 7.0 19 300-318 158-176 (224)
35 PF04341 DUF485: Protein of un 39.8 2E+02 0.0043 24.9 7.9 23 121-143 20-42 (91)
36 PF12650 DUF3784: Domain of un 39.3 1.6E+02 0.0034 25.2 7.2 6 106-111 29-34 (97)
37 PF07332 DUF1469: Protein of u 38.3 2.7E+02 0.0058 24.2 9.8 6 181-186 94-99 (121)
38 PF05297 Herpes_LMP1: Herpesvi 37.8 11 0.00023 40.3 0.0 10 123-132 116-125 (381)
39 KOG0827|consensus 35.4 15 0.00032 40.4 0.6 44 33-84 4-49 (465)
40 PF05297 Herpes_LMP1: Herpesvi 34.8 13 0.00028 39.7 0.0 21 151-172 135-155 (381)
41 COG3302 DmsC DMSO reductase an 34.3 1.2E+02 0.0027 32.0 6.8 66 97-177 65-132 (281)
42 PF06796 NapE: Periplasmic nit 34.0 48 0.001 27.5 3.1 18 155-172 31-48 (56)
43 PF09788 Tmemb_55A: Transmembr 33.9 1E+02 0.0022 32.2 6.1 11 31-41 63-73 (256)
44 smart00184 RING Ring finger. E 33.3 9.1 0.0002 25.2 -0.9 30 36-76 1-30 (39)
45 PF13903 Claudin_2: PMP-22/EMP 32.6 1.9E+02 0.0042 25.3 6.9 22 148-169 149-170 (172)
46 TIGR02230 ATPase_gene1 F0F1-AT 32.5 2.3E+02 0.0051 25.7 7.5 19 152-171 75-93 (100)
47 TIGR03745 conj_TIGR03745 integ 32.2 88 0.0019 28.9 4.8 32 139-170 65-96 (104)
48 PF03348 Serinc: Serine incorp 31.3 1.6E+02 0.0034 32.2 7.4 26 161-186 141-166 (429)
49 TIGR02972 TMAO_torE trimethyla 31.0 61 0.0013 26.2 3.2 18 155-172 23-40 (47)
50 PF03699 UPF0182: Uncharacteri 30.7 2.4E+02 0.0053 33.4 9.1 10 152-161 42-51 (774)
51 COG4459 NapE Periplasmic nitra 30.7 41 0.00089 28.4 2.3 17 156-172 35-51 (62)
52 PRK00068 hypothetical protein; 30.5 2.1E+02 0.0045 34.9 8.7 19 140-158 39-59 (970)
53 PF04156 IncA: IncA protein; 30.4 3.5E+02 0.0076 25.3 8.6 8 155-162 42-49 (191)
54 PHA02929 N1R/p28-like protein; 29.8 28 0.0006 35.5 1.4 41 31-77 172-215 (238)
55 KOG0804|consensus 29.3 32 0.00069 38.4 1.8 47 27-84 169-215 (493)
56 PRK10747 putative protoheme IX 28.3 1.1E+02 0.0023 31.9 5.3 14 148-161 37-50 (398)
57 PHA03029 hypothetical protein; 28.1 2.7E+02 0.0059 25.0 6.9 21 121-141 19-39 (92)
58 COG5540 RING-finger-containing 27.7 23 0.0005 38.1 0.4 42 31-79 321-362 (374)
59 KOG1726|consensus 27.2 1.7E+02 0.0037 30.0 6.4 18 121-138 7-24 (225)
60 PF01440 Gemini_AL2: Geminivir 27.0 40 0.00087 32.0 1.8 31 48-84 31-61 (134)
61 PLN03208 E3 ubiquitin-protein 27.0 23 0.00051 35.2 0.3 39 27-76 12-50 (193)
62 PF09726 Macoilin: Transmembra 26.7 4.8E+02 0.01 30.5 10.5 17 128-144 53-69 (697)
63 TIGR02973 nitrate_rd_NapE peri 26.5 79 0.0017 25.1 3.0 18 155-172 18-35 (42)
64 KOG3618|consensus 26.5 1.1E+02 0.0024 36.9 5.4 15 122-136 87-101 (1318)
65 PF09527 ATPase_gene1: Putativ 26.4 3.1E+02 0.0067 21.3 6.8 18 153-170 33-50 (55)
66 PF09753 Use1: Membrane fusion 26.2 89 0.0019 31.1 4.1 10 166-175 240-249 (251)
67 PF05883 Baculo_RING: Baculovi 26.0 8.9 0.00019 36.3 -2.6 38 32-73 25-65 (134)
68 PRK14584 hmsS hemin storage sy 25.1 4.4E+02 0.0095 25.8 8.3 16 152-167 60-75 (153)
69 PRK12438 hypothetical protein; 24.6 3.2E+02 0.0069 33.5 8.8 24 140-163 41-66 (991)
70 KOG0802|consensus 24.6 23 0.00049 39.0 -0.3 44 31-84 289-334 (543)
71 PF06923 GutM: Glucitol operon 24.4 1.6E+02 0.0034 26.6 5.0 37 157-196 6-42 (109)
72 PF01529 zf-DHHC: DHHC palmito 23.9 4.9E+02 0.011 23.5 8.1 6 34-39 49-54 (174)
73 PRK10234 DNA-binding transcrip 23.7 1.5E+02 0.0033 27.5 4.9 34 155-188 5-38 (118)
74 PRK15035 cytochrome bd-II oxid 23.5 2.3E+02 0.0049 32.2 7.0 51 110-160 8-62 (514)
75 PF15050 SCIMP: SCIMP protein 23.5 79 0.0017 30.2 3.0 32 152-184 8-41 (133)
76 PRK10714 undecaprenyl phosphat 23.5 5.6E+02 0.012 26.3 9.3 9 129-137 247-255 (325)
77 PRK00523 hypothetical protein; 23.1 1.5E+02 0.0032 25.9 4.4 6 162-167 18-23 (72)
78 PRK10747 putative protoheme IX 23.1 1.3E+02 0.0027 31.4 4.7 28 148-175 30-60 (398)
79 KOG4220|consensus 22.7 6.6E+02 0.014 28.7 10.1 22 168-189 204-225 (503)
80 KOG2678|consensus 22.5 87 0.0019 32.5 3.3 23 148-170 215-237 (244)
81 PRK09510 tolA cell envelope in 22.5 83 0.0018 34.3 3.4 22 111-132 12-33 (387)
82 PF01654 Bac_Ubq_Cox: Bacteria 22.4 7.3E+02 0.016 27.4 10.4 49 111-160 3-56 (436)
83 COG1271 CydA Cytochrome bd-typ 22.4 2.3E+02 0.005 31.7 6.7 52 110-161 8-63 (457)
84 PF12292 DUF3624: Protein of u 22.0 3.2E+02 0.0068 24.2 6.1 17 155-172 51-67 (77)
85 PF14316 DUF4381: Domain of un 21.9 1.1E+02 0.0025 28.0 3.7 6 152-157 23-28 (146)
86 PRK10755 sensor protein BasS/P 21.8 7.8E+02 0.017 24.3 9.9 11 347-357 280-290 (356)
87 cd04260 AAK_AKi-DapG-BS AAK_AK 21.6 43 0.00094 32.8 1.0 10 412-421 2-11 (244)
88 PRK15097 cytochrome d terminal 21.3 2.7E+02 0.0058 31.7 7.0 51 110-161 8-63 (522)
89 PF10367 Vps39_2: Vacuolar sor 20.8 64 0.0014 26.8 1.7 34 31-72 76-109 (109)
90 KOG2302|consensus 20.7 1.5E+02 0.0034 36.8 5.2 31 177-215 1221-1252(1956)
91 cd00162 RING RING-finger (Real 20.1 23 0.00049 24.2 -0.9 33 35-77 1-33 (45)
No 1
>KOG1609|consensus
Probab=99.70 E-value=1.2e-18 Score=165.63 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=123.0
Q ss_pred CCCCeeeEecCCCCCCCC--CCccCccCCCCCCceEEccccccccccCCCCccccc--cccccccccCCccccchhhccc
Q psy16527 31 NGFDICRICHCEVTPEAS--PDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA--SFSSSCRQKPNLSVRSWEHLEM 106 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~--pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE--eF~ms~reTKlKPLRqWekLqM 106 (562)
.++.+|||||++... .. ++++||.|+ |+++|||+.|+++| ...+++..|| .+.+....++.++...|.+...
T Consensus 76 ~~~~~cRIc~~~~~~-~~~~~l~~pC~C~--g~l~~vH~~cl~~W-~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~ 151 (323)
T KOG1609|consen 76 SSGPICRICHEEDEE-SNGLLLISPCSCK--GSLAYVHRSCLEKW-FSIKGNITCEICKSFFINVGTKLKPLIVISKVRS 151 (323)
T ss_pred CCCCcEEEEeccccc-ccccccccCcccc--CcHHHHHHHHHHhh-hccccCeeeecccccceecceeecceeehhhhhh
Confidence 447899999987664 22 799999999 99999999999999 8999999999 3333223356667778887776
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc----ccchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy16527 107 TGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTG----ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQ 182 (562)
Q Consensus 107 S~~ERRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrqG----iLEwPFWTkLIVVAIGFtGgLVFMYIqCK~YvqLWR 182 (562)
.....+.+.+.++++...+.++.|+...++.+...++..+ ...+++|+.+.++++|+++..+++++.++.|..+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 231 (323)
T KOG1609|consen 152 GALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILK 231 (323)
T ss_pred HhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHH
Confidence 6666667777667777777777777777766666554442 366788888899999999999999999999999999
Q ss_pred HHHHHcc
Q psy16527 183 RWKAYNS 189 (562)
Q Consensus 183 RWRA~Nr 189 (562)
+|+..+.
T Consensus 232 ~~~~~~~ 238 (323)
T KOG1609|consen 232 SLKVKLV 238 (323)
T ss_pred HHHHHHh
Confidence 9999999
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.68 E-value=2.9e-17 Score=153.35 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=64.7
Q ss_pred CCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc----cccccccccCCccccchhhcc
Q psy16527 30 SNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEHLE 105 (562)
Q Consensus 30 SSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE----eF~ms~reTKlKPLRqWekLq 105 (562)
+..++.|||||++++ ++.+||+|+ ||++|||++||++| +..|++..|| +|.+ .+..+|+++|....
T Consensus 5 s~~~~~CRIC~~~~~----~~~~PC~Ck--Gs~k~VH~sCL~rW-i~~s~~~~CeiC~~~Y~i---~~~~kpl~~W~~~~ 74 (162)
T PHA02825 5 SLMDKCCWICKDEYD----VVTNYCNCK--NENKIVHKECLEEW-INTSKNKSCKICNGPYNI---KKNYKKCTKWRCSF 74 (162)
T ss_pred CCCCCeeEecCCCCC----CccCCcccC--CCchHHHHHHHHHH-HhcCCCCcccccCCeEEE---EEecCCCccccccC
Confidence 578899999997643 467999999 99999999999999 9999999999 6666 56778999998877
Q ss_pred cchHHHHHHHHHHHHHHH
Q psy16527 106 MTGMERRKLLCAVLFHAV 123 (562)
Q Consensus 106 MS~~ERRkLmCsVLFhVI 123 (562)
+...+ +.++-+.+|+++
T Consensus 75 ~dc~~-~~l~~~llcl~~ 91 (162)
T PHA02825 75 RDCHD-SAIVNSLLCLIV 91 (162)
T ss_pred cchhh-HHHHHHHHHHHH
Confidence 65443 334433444433
No 3
>PHA02862 5L protein; Provisional
Probab=99.64 E-value=8e-17 Score=149.12 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc----cccccccccCCccccchhh---cc
Q psy16527 33 FDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEH---LE 105 (562)
Q Consensus 33 ~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE----eF~ms~reTKlKPLRqWek---Lq 105 (562)
.++|||||+++++ .++||+|+ ||++|||++||++| ++.|++..|| +|.+ +++.||+++|.. -+
T Consensus 2 ~diCWIC~~~~~e----~~~PC~C~--GS~K~VHq~CL~~W-In~S~k~~CeLCkteY~I---k~~yKpf~kW~~~f~d~ 71 (156)
T PHA02862 2 SDICWICNDVCDE----RNNFCGCN--EEYKVVHIKCMQLW-INYSKKKECNLCKTKYNI---KKTYVSFKKWNWCFNDK 71 (156)
T ss_pred CCEEEEecCcCCC----Cccccccc--CcchhHHHHHHHHH-HhcCCCcCccCCCCeEEE---EEccccHHHhhccCCCC
Confidence 4799999976543 37999999 99999999999999 9999999999 6766 778899999984 33
Q ss_pred cchHHHHHHHH
Q psy16527 106 MTGMERRKLLC 116 (562)
Q Consensus 106 MS~~ERRkLmC 116 (562)
-+..+++-+++
T Consensus 72 k~~l~ki~fI~ 82 (156)
T PHA02862 72 KTTLSKIFFIL 82 (156)
T ss_pred CCchheeeeHh
Confidence 35566665544
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.32 E-value=1.6e-13 Score=105.30 Aligned_cols=46 Identities=35% Similarity=0.614 Sum_probs=40.7
Q ss_pred eeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 35 ICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 35 iCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
+||||+.++++ +++|++||.|+ ||++|||+.||++| +..+++..||
T Consensus 1 ~CrIC~~~~~~-~~~l~~PC~C~--G~~~~vH~~Cl~~W-~~~~~~~~C~ 46 (49)
T smart00744 1 ICRICHDEGDE-GDPLVSPCRCK--GSLKYVHQECLERW-INESGNKTCE 46 (49)
T ss_pred CccCCCCCCCC-CCeeEeccccC--CchhHHHHHHHHHH-HHHcCCCcCC
Confidence 69999974443 88999999999 99999999999999 8888777887
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.31 E-value=9.2e-14 Score=105.84 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=34.6
Q ss_pred eeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 36 CRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 36 CRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
||||+.++++ +.+|++||.|+ ||++|||++||++| +..++...||
T Consensus 1 CrIC~~~~~~-~~~li~pC~C~--Gs~~~vH~~CL~~W-~~~~~~~~C~ 45 (47)
T PF12906_consen 1 CRICLEGEEE-DEPLISPCRCK--GSMKYVHRSCLERW-IRESGNRKCE 45 (47)
T ss_dssp ETTTTEE-SS-SS-EE-SSS-S--SCCGSEECCHHHHH-HHHHT-SB-T
T ss_pred CeEeCCcCCC-CCceecccccC--CCcchhHHHHHHHH-HHhcCCCcCC
Confidence 9999977665 55899999999 99999999999999 7777777786
No 6
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.28 E-value=2.5e-12 Score=142.13 Aligned_cols=50 Identities=24% Similarity=0.451 Sum_probs=47.2
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+..+|||||||+.+ ++||..||+|+ ||+||+|++||..| +..|++..|+
T Consensus 10 ~d~~~CRICr~e~~~-d~pLfhPCKC~--GSIkYiH~eCL~eW-~~~s~~~kCd 59 (1175)
T COG5183 10 EDKRSCRICRTEDIR-DDPLFHPCKCS--GSIKYIHRECLMEW-MECSGTKKCD 59 (1175)
T ss_pred ccchhceeecCCCCC-CCcCccccccc--chhHHHHHHHHHHH-HhcCCCccee
Confidence 466899999998876 99999999999 99999999999999 9999999999
No 7
>KOG3053|consensus
Probab=98.69 E-value=4.4e-09 Score=105.50 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCCCCeeeEecCCCCC-CCCCCccCccCCCCCCceEEccccccccccCCC
Q psy16527 30 SNGFDICRICHCEVTP-EASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS 78 (562)
Q Consensus 30 SSs~diCRIChcEgd~-e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS 78 (562)
......|+||+..+++ .-..++.||+|. ||.|+|||+||.+| +.++
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCR--Gt~KWVHqsCL~rW-iDEK 63 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCR--GTTKWVHQSCLSRW-IDEK 63 (293)
T ss_pred cccceeEEEEeccCcccchhhhccccccc--CccHHHHHHHHHHH-HhHH
Confidence 4567899999743321 122369999999 99999999999999 8654
No 8
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=94.33 E-value=0.12 Score=47.31 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhccccchhhHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16527 121 HAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKA 176 (562)
Q Consensus 121 hVIAItCVIWSLYVLIeRTAeEIrqGiLEwPFWTkLIVVAIGFtGgLVFMYIqCK~ 176 (562)
..+|++++ +.++++++..-+..|..+|+| ++|.++.+.+.|.++.|||+.|.
T Consensus 65 RsvAli~m---~LLllRhal~l~~~~~~~~s~-~lftl~~LRaaGilLP~Yim~ra 116 (118)
T PF12428_consen 65 RSVALIFM---VLLLLRHALALVTGGAEDYSF-TLFTLLLLRAAGILLPCYIMARA 116 (118)
T ss_pred HHHHHHHH---HHHHHHHHHHHhcCCcccccH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 345678887777778889998 77888899999999999998764
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=81.57 E-value=0.12 Score=38.00 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=25.0
Q ss_pred CeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCC
Q psy16527 34 DICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS 78 (562)
Q Consensus 34 diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS 78 (562)
+.|-||+.+-..++.....| |. ...|..|+.+| ++.+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~--C~-----H~fh~~Ci~~~-~~~~ 37 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP--CG-----HVFHRSCIKEW-LKRN 37 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET--TS-----EEEEHHHHHHH-HHHS
T ss_pred CCCcCCChhhcCCCeEEEcc--CC-----CeeCHHHHHHH-HHhC
Confidence 46889986554323333444 77 99999999999 6543
No 10
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=66.42 E-value=15 Score=37.64 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHH-----hhhHHHHHHH
Q psy16527 151 PFWIKLIVVVIGF-----TGGVVFMYIQ 173 (562)
Q Consensus 151 PFWTkLIVVAIGF-----tGgLVFMYIq 173 (562)
.||+.|+.+++|+ +|+++++|-.
T Consensus 196 ~~~~~lwyi~Y~vPY~~~ig~~i~l~~~ 223 (230)
T PF03904_consen 196 SFWTYLWYIAYLVPYIFAIGLFIYLYEW 223 (230)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4899888888763 4555555543
No 11
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=65.90 E-value=29 Score=36.05 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=23.0
Q ss_pred HhccccchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy16527 143 IYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHIC 181 (562)
Q Consensus 143 IrqGiLEwPFWTkLIVVAIGFtGgLVFMYIqCK~YvqLW 181 (562)
+++|.-.+--| ..|+|++-.++|+|+-+-..+.++
T Consensus 237 v~~gaPk~~eW----~~AfGL~vTLVWLYlEILRLL~~l 271 (274)
T PF12811_consen 237 VRQGAPKKMEW----YAAFGLLVTLVWLYLEILRLLSKL 271 (274)
T ss_pred HHcCCChhhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565444444 367898999999999765554444
No 12
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=64.68 E-value=2.1 Score=35.38 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=15.4
Q ss_pred CeeeEecCCCC-CCCCC-C-ccCccCCCCCCceEEcccccccccc
Q psy16527 34 DICRICHCEVT-PEASP-D-VSPAYCFWFSPLTSIRHACSSGSSH 75 (562)
Q Consensus 34 diCRIChcEgd-~e~~p-L-ISPC~Cs~~GSLkyVHqsCL~rWrL 75 (562)
..|.||+.... ....| + -..+.|. +..|..||.+|.+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~-----~~fH~~CL~~wf~ 42 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCG-----KKFHLLCLSEWFL 42 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT---------B-SGGGHHHHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccC-----CHHHHHHHHHHHH
Confidence 56999976533 21222 2 2336788 8899999999943
No 13
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=62.54 E-value=30 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=9.1
Q ss_pred cchhhcccchHHHHHHHHHHHHHH
Q psy16527 99 RSWEHLEMTGMERRKLLCAVLFHA 122 (562)
Q Consensus 99 RqWekLqMS~~ERRkLmCsVLFhV 122 (562)
++|+++. ++.+.+..++.+
T Consensus 11 ~K~e~l~-----k~~~~~~~~~l~ 29 (130)
T PF10864_consen 11 EKWERLK-----KQHLFWQWLFLF 29 (130)
T ss_pred HHHHHHH-----HHHHHHHHHHHH
Confidence 3577653 344444444433
No 14
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=62.43 E-value=23 Score=33.48 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q psy16527 111 RRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYT 145 (562)
Q Consensus 111 RRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrq 145 (562)
|+..+.+++|.++||.|.+|++++...|+.. |++
T Consensus 58 ~~g~~~a~vftivaif~~~ya~~lY~kRa~~-Ir~ 91 (126)
T COG5264 58 RLGMISAYVFTIVAIFCGFYALMLYLKRAVN-IRQ 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 5556677889999999999999888888654 444
No 15
>KOG4580|consensus
Probab=60.24 E-value=42 Score=31.26 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q psy16527 111 RRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYT 145 (562)
Q Consensus 111 RRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrq 145 (562)
|+..+...+|.++||.|.+|++++...|+.. |++
T Consensus 43 ~~g~~~a~v~t~vaif~~~ya~~lYlwRa~~-I~~ 76 (112)
T KOG4580|consen 43 RLGILSAYVYTLVAIFCGFYALFLYLWRASM-IRQ 76 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 5556667789999999999999888887654 444
No 16
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=59.37 E-value=4 Score=33.75 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=13.5
Q ss_pred eEEccccccccccCCCC
Q psy16527 63 TSIRHACSSGSSHPTSD 79 (562)
Q Consensus 63 kyVHqsCL~rWrLksSd 79 (562)
...|..||.+| ++.+.
T Consensus 52 H~FH~~Ci~~W-l~~~~ 67 (73)
T PF12678_consen 52 HIFHFHCISQW-LKQNN 67 (73)
T ss_dssp EEEEHHHHHHH-HTTSS
T ss_pred CCEEHHHHHHH-HhcCC
Confidence 88999999999 76554
No 17
>COG4760 Predicted membrane protein [Function unknown]
Probab=57.26 E-value=33 Score=35.35 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=26.5
Q ss_pred HHhccccchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy16527 142 EIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHIC 181 (562)
Q Consensus 142 EIrqGiLEwPFWTkLIVVAIGFtGgLVFMYIqCK~YvqLW 181 (562)
.++.|..++--|. +|+|++-.++|+|+-|-..+.+.
T Consensus 238 ~vr~GAP~kmaWg----vAlGL~VTLVWLY~EiLRLLSy~ 273 (276)
T COG4760 238 MVRAGAPEKMAWG----VALGLTVTLVWLYLEILRLLSYL 273 (276)
T ss_pred HHHcCChhhhHHH----HHHhHHHHHHHHHHHHHHHHHHh
Confidence 3677876666664 68898889999999877555443
No 18
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=55.71 E-value=57 Score=28.94 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=18.9
Q ss_pred hHHHHhccccchhhHHHHHHHHHHHhhhHHHH
Q psy16527 139 TVDEIYTGILEWPFWIKLIVVVIGFTGGVVFM 170 (562)
Q Consensus 139 TAeEIrqGiLEwPFWTkLIVVAIGFtGgLVFM 170 (562)
+..|++.|.-.|.-....+++.+.++..++|+
T Consensus 49 ~y~eir~gK~~W~~fg~~~vVGvvLlv~viwL 80 (87)
T PF11190_consen 49 TYNEIRDGKKTWGDFGATVVVGVVLLVFVIWL 80 (87)
T ss_pred HHHHHHcCcccHHHhhhHHHHHHHHHHHHHHH
Confidence 35688888888875444455555444444443
No 19
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=53.87 E-value=5.1 Score=22.82 Aligned_cols=7 Identities=43% Similarity=1.027 Sum_probs=5.9
Q ss_pred EEecCCC
Q psy16527 223 YVQNAPE 229 (562)
Q Consensus 223 ~vqn~pe 229 (562)
||||||-
T Consensus 2 ~i~nCP~ 8 (9)
T PF00220_consen 2 YIRNCPI 8 (9)
T ss_pred ccccCCC
Confidence 8999984
No 20
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=51.25 E-value=56 Score=31.31 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=3.6
Q ss_pred chhhHH
Q psy16527 149 EWPFWI 154 (562)
Q Consensus 149 EwPFWT 154 (562)
+.|||.
T Consensus 42 ~~p~~~ 47 (137)
T PRK14585 42 TGYYWQ 47 (137)
T ss_pred cchHHH
Confidence 447873
No 21
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=50.63 E-value=1.6e+02 Score=27.28 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHcc
Q psy16527 174 CKAYLHICQRWKAYNS 189 (562)
Q Consensus 174 CK~YvqLWRRWRA~Nr 189 (562)
.|.|..+-+++.+|-.
T Consensus 110 ~r~~~~~~~~~~ry~~ 125 (141)
T PF12576_consen 110 FRQYTGYKNNRARYQL 125 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3666666666665543
No 22
>KOG3195|consensus
Probab=50.60 E-value=46 Score=33.79 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHcc
Q psy16527 152 FWIKLIVVVIGFTGGVVFMYIQCKA--------YLHICQRWKAYNS 189 (562)
Q Consensus 152 FWTkLIVVAIGFtGgLVFMYIqCK~--------YvqLWRRWRA~Nr 189 (562)
.|..+++|++++.+.-++-|..|+. -..-...|...+.
T Consensus 150 ~wL~lv~vg~~l~~aN~~Gy~rC~~~a~~~~~q~~~ds~~~~f~~~ 195 (213)
T KOG3195|consen 150 KWLILVVVGIALNSANLYGYSRCDKDAKKKFQQVASDSNKWIFLSS 195 (213)
T ss_pred HHHHHHHHHHHHhhhhhheeeecCCccchhHHHHHHHHHHHHHHHh
Confidence 5778889999998888899999952 2345677888887
No 23
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=50.52 E-value=61 Score=32.88 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=6.4
Q ss_pred HHHHHHHhhhHH
Q psy16527 157 IVVVIGFTGGVV 168 (562)
Q Consensus 157 IVVAIGFtGgLV 168 (562)
.+.++||+|.++
T Consensus 143 S~~~lgll~~~~ 154 (224)
T PF03839_consen 143 SVGALGLLGLFF 154 (224)
T ss_pred HHHHHHHHHHHH
Confidence 445556666543
No 24
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=47.53 E-value=1.5e+02 Score=24.09 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy16527 124 ALTCVIWSLYVLIER 138 (562)
Q Consensus 124 AItCVIWSLYVLIeR 138 (562)
.++|-++.+|-+...
T Consensus 11 iiT~GIY~l~W~y~~ 25 (75)
T PF14018_consen 11 IITCGIYGLYWLYKI 25 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667776655443
No 25
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=44.76 E-value=2.5e+02 Score=28.28 Aligned_cols=17 Identities=29% Similarity=0.342 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhHHHH
Q psy16527 154 IKLIVVVIGFTGGVVFM 170 (562)
Q Consensus 154 TkLIVVAIGFtGgLVFM 170 (562)
..+-+|.+++++.++|+
T Consensus 132 ~~~~~inL~~T~~~~~~ 148 (195)
T PF01616_consen 132 ITLHVINLIATTAMMFC 148 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777754443
No 26
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=44.25 E-value=60 Score=31.88 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=6.6
Q ss_pred HHHHHHHHcc
Q psy16527 180 ICQRWKAYNS 189 (562)
Q Consensus 180 LWRRWRA~Nr 189 (562)
-|+.||--=+
T Consensus 73 Ryr~wry~v~ 82 (161)
T COG3402 73 RYRVWRYEVE 82 (161)
T ss_pred hhhhheeecc
Confidence 4777887554
No 27
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=43.56 E-value=74 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16527 111 RRKLLCAVLFHAVALTCVIWSLYVLIER 138 (562)
Q Consensus 111 RRkLmCsVLFhVIAItCVIWSLYVLIeR 138 (562)
.+.++.+++..++++++++.++++++.+
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666655566677776766665543
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=42.99 E-value=38 Score=35.08 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=7.2
Q ss_pred cchhhHHHHHHHHHH
Q psy16527 148 LEWPFWIKLIVVVIG 162 (562)
Q Consensus 148 LEwPFWTkLIVVAIG 162 (562)
++-++|+.++++++.
T Consensus 37 ie~s~~~~~~~~~~~ 51 (409)
T TIGR00540 37 IEMSITGLAIFFIIA 51 (409)
T ss_pred EEeeHHHHHHHHHHH
Confidence 344566655444443
No 29
>KOG2568|consensus
Probab=42.52 E-value=1.5e+02 Score=33.70 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=15.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH--HHHHHHH
Q psy16527 157 IVVVIGFTGGVVFMYIQCKAYL--HICQRWK 185 (562)
Q Consensus 157 IVVAIGFtGgLVFMYIqCK~Yv--qLWRRWR 185 (562)
.+++++++..++||++-...|. .+-+.||
T Consensus 386 n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk 416 (518)
T KOG2568|consen 386 NTLAFSVVASFAFILVETIFYSIMSCNKDWK 416 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455666666666665544443 3334444
No 30
>PF07243 Phlebovirus_G1: Phlebovirus glycoprotein G1; InterPro: IPR010826 This domain is found in several Phlebovirus glycoprotein G1 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=42.46 E-value=1.3e+02 Score=34.31 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=7.6
Q ss_pred HHHHHHHccCCC
Q psy16527 181 CQRWKAYNSEGG 192 (562)
Q Consensus 181 WRRWRA~NrE~~ 192 (562)
-++-++.|++++
T Consensus 477 ~r~i~rIN~~IG 488 (526)
T PF07243_consen 477 RRLIRRINNEIG 488 (526)
T ss_pred HHHHHHHHHhhC
Confidence 345666787665
No 31
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=42.19 E-value=2.2e+02 Score=24.40 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=11.5
Q ss_pred cccchhhHHHHHHHHHHH
Q psy16527 146 GILEWPFWIKLIVVVIGF 163 (562)
Q Consensus 146 GiLEwPFWTkLIVVAIGF 163 (562)
....+|.|....++.+|+
T Consensus 99 ~~~~ip~~~~~~~~~i~~ 116 (133)
T PF04290_consen 99 PILGIPLWWVYLAIPIGF 116 (133)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 456688776666665654
No 32
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=42.19 E-value=74 Score=30.73 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccccchhhHHHH
Q psy16527 111 RRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKL 156 (562)
Q Consensus 111 RRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrqGiLEwPFWTkL 156 (562)
||-.+++-+-.++++..++.++|+.. .+..+.|-|..+
T Consensus 63 rRm~~~~GiP~~lG~~~f~~~y~l~~--------~~~~dvP~~~~~ 100 (153)
T PF11947_consen 63 RRMAVFVGIPTALGVAVFVVFYYLKS--------RQIVDVPPWAVL 100 (153)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHh--------ccccccCchHHH
Confidence 33333333444555555555544422 245667777544
No 33
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=39.95 E-value=2.4e+02 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcc
Q psy16527 154 IKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNS 189 (562)
Q Consensus 154 TkLIVVAIGFtGgLVFMYIqCK~YvqLWRRWRA~Nr 189 (562)
..+.++.+|+...++ ++..+|...++.-|.-++|.
T Consensus 142 ~~i~~~glGlll~~~-~~~l~k~~~~~~~~y~kw~~ 176 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVI-TFYLTKLFIKLTVRYLKWNI 176 (181)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 334444444332222 23345555555555555554
No 34
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=39.86 E-value=99 Score=31.60 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=11.7
Q ss_pred eeEEeeccccccccccccc
Q psy16527 300 RICVQKDEKQSRLVDYLET 318 (562)
Q Consensus 300 ~~~~~~~~~~~~~~d~~~~ 318 (562)
.|.|+.+|.|-.|.+...+
T Consensus 158 ~i~vG~gegQVpL~kL~~~ 176 (224)
T PF13829_consen 158 DIIVGNGEGQVPLRKLQKT 176 (224)
T ss_pred EEEecCCCCceeHHHHHHH
Confidence 3667777777666655443
No 35
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=39.78 E-value=2e+02 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q psy16527 121 HAVALTCVIWSLYVLIERTVDEI 143 (562)
Q Consensus 121 hVIAItCVIWSLYVLIeRTAeEI 143 (562)
.+.++.++.+..|+++-..+.++
T Consensus 20 ~l~~i~l~~y~~~~ll~a~~p~~ 42 (91)
T PF04341_consen 20 PLSAIFLVLYFGFVLLSAFAPEL 42 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHH
Confidence 34445555666677666555444
No 36
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=39.27 E-value=1.6e+02 Score=25.19 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.6
Q ss_pred cchHHH
Q psy16527 106 MTGMER 111 (562)
Q Consensus 106 MS~~ER 111 (562)
|+..||
T Consensus 29 ms~eEk 34 (97)
T PF12650_consen 29 MSKEEK 34 (97)
T ss_pred CCHHHH
Confidence 344444
No 37
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=38.27 E-value=2.7e+02 Score=24.23 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy16527 181 CQRWKA 186 (562)
Q Consensus 181 WRRWRA 186 (562)
++++++
T Consensus 94 ~~~l~~ 99 (121)
T PF07332_consen 94 RRRLRR 99 (121)
T ss_pred HHHHhc
Confidence 444443
No 38
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=37.76 E-value=11 Score=40.25 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy16527 123 VALTCVIWSL 132 (562)
Q Consensus 123 IAItCVIWSL 132 (562)
+.+.+.||+.
T Consensus 116 ~lLaL~vW~Y 125 (381)
T PF05297_consen 116 CLLALGVWFY 125 (381)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444456765
No 39
>KOG0827|consensus
Probab=35.44 E-value=15 Score=40.44 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=28.0
Q ss_pred CCeeeEecCCCCCCCCCCccCcc-CCCCCCceEEccccccccccCCCCc-cccc
Q psy16527 33 FDICRICHCEVTPEASPDVSPAY-CFWFSPLTSIRHACSSGSSHPTSDV-ANCA 84 (562)
Q Consensus 33 ~diCRIChcEgd~e~~pLISPC~-Cs~~GSLkyVHqsCL~rWrLksSdt-~~CE 84 (562)
..+|.||- .+.+-+. -+.|=. |- ..+|..||.+| ...--. +.|+
T Consensus 4 ~A~C~Ic~-d~~p~~~-~l~~i~~cG-----hifh~~cl~qw-fe~~Ps~R~cp 49 (465)
T KOG0827|consen 4 MAECHICI-DGRPNDH-ELGPIGTCG-----HIFHTTCLTQW-FEGDPSNRGCP 49 (465)
T ss_pred cceeeEec-cCCcccc-ccccccchh-----hHHHHHHHHHH-HccCCccCCCC
Confidence 46899994 3444233 344444 65 66899999999 543322 5777
No 40
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=34.81 E-value=13 Score=39.71 Aligned_cols=21 Identities=29% Similarity=0.679 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhHHHHHH
Q psy16527 151 PFWIKLIVVVIGFTGGVVFMYI 172 (562)
Q Consensus 151 PFWTkLIVVAIGFtGgLVFMYI 172 (562)
.|||+| .++++|.-.++++.|
T Consensus 135 s~WtiL-aFcLAF~LaivlLII 155 (381)
T PF05297_consen 135 SFWTIL-AFCLAFLLAIVLLII 155 (381)
T ss_dssp ----------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 478754 234444444444433
No 41
>COG3302 DmsC DMSO reductase anchor subunit [General function prediction only]
Probab=34.33 E-value=1.2e+02 Score=31.98 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=33.4
Q ss_pred cccchhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccccchhhHHHHHHHHHHHhhhHHHHHHHH
Q psy16527 97 SVRSWEHLEMT--GMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQC 174 (562)
Q Consensus 97 PLRqWekLqMS--~~ERRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrqGiLEwPFWTkLIVVAIGFtGgLVFMYIqC 174 (562)
|+|-|..+.-= ..--|.+..+.+|..++.. .|.++++-.. =++|..+. .+..+.|++|+|.+.
T Consensus 65 PlRA~naL~rvg~SwLSnEI~~~~lf~a~~Gl--~~L~~~l~k~-----------~~~~~~~l--~laav~Gvvfv~~m~ 129 (281)
T COG3302 65 PLRAFNALNRVGSSWLSNEIAAGSLFFALAGL--GWLLAVLKKM-----------TALGNLWL--LLAAVLGVVFVWMMA 129 (281)
T ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHhcc-----------cchhHHHH--HHHHHHHHHHHHHHH
Confidence 56666544311 1112457777666655532 3333333221 13444322 344556778888888
Q ss_pred HHH
Q psy16527 175 KAY 177 (562)
Q Consensus 175 K~Y 177 (562)
+.|
T Consensus 130 ~VY 132 (281)
T COG3302 130 QVY 132 (281)
T ss_pred hhh
Confidence 877
No 42
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=34.01 E-value=48 Score=27.54 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhHHHHHH
Q psy16527 155 KLIVVVIGFTGGVVFMYI 172 (562)
Q Consensus 155 kLIVVAIGFtGgLVFMYI 172 (562)
.|.|..+|.+|.++|||=
T Consensus 31 iL~v~~Vg~YGF~VWm~Q 48 (56)
T PF06796_consen 31 ILAVAFVGGYGFIVWMYQ 48 (56)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667788888889873
No 43
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.88 E-value=1e+02 Score=32.22 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=7.9
Q ss_pred CCCCeeeEecC
Q psy16527 31 NGFDICRICHC 41 (562)
Q Consensus 31 Ss~diCRIChc 41 (562)
.-...||+|+.
T Consensus 63 ~p~v~CrVCq~ 73 (256)
T PF09788_consen 63 APVVTCRVCQS 73 (256)
T ss_pred CceEEeecCCc
Confidence 34578999954
No 44
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=33.25 E-value=9.1 Score=25.18 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=21.1
Q ss_pred eeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccC
Q psy16527 36 CRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHP 76 (562)
Q Consensus 36 CRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLk 76 (562)
|.||+... ..+.+.||.- ..|..|+.+| ++
T Consensus 1 C~iC~~~~---~~~~~~~C~H-------~~c~~C~~~~-~~ 30 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGH-------TFCRSCIRKW-LK 30 (39)
T ss_pred CCcCccCC---CCcEEecCCC-------hHHHHHHHHH-HH
Confidence 67887542 4567777544 3699999999 55
No 45
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=32.58 E-value=1.9e+02 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.927 Sum_probs=9.3
Q ss_pred cchhhHHHHHHHHHHHhhhHHH
Q psy16527 148 LEWPFWIKLIVVVIGFTGGVVF 169 (562)
Q Consensus 148 LEwPFWTkLIVVAIGFtGgLVF 169 (562)
..|+||...+...+-++++++|
T Consensus 149 ~gwSf~la~~a~~~~l~a~~l~ 170 (172)
T PF13903_consen 149 YGWSFWLAWVAFILLLLAGILF 170 (172)
T ss_pred ECHHHHHHHHHHHHHHHHHHHH
Confidence 4566664332223333444433
No 46
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.53 E-value=2.3e+02 Score=25.71 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHhhhHHHHH
Q psy16527 152 FWIKLIVVVIGFTGGVVFMY 171 (562)
Q Consensus 152 FWTkLIVVAIGFtGgLVFMY 171 (562)
+|| ++++.+|+..|+..+|
T Consensus 75 ~~t-l~~lllGv~~G~~n~w 93 (100)
T TIGR02230 75 SWT-LTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHH-HHHHHHHHHHHHHHHH
Confidence 555 3455566665554444
No 47
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=32.23 E-value=88 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=19.6
Q ss_pred hHHHHhccccchhhHHHHHHHHHHHhhhHHHH
Q psy16527 139 TVDEIYTGILEWPFWIKLIVVVIGFTGGVVFM 170 (562)
Q Consensus 139 TAeEIrqGiLEwPFWTkLIVVAIGFtGgLVFM 170 (562)
+..|+++|...|.-.-..++|.+.++..++|+
T Consensus 65 ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwL 96 (104)
T TIGR03745 65 TYHEIRTGKATWGDFGATVVVGAILLVVIIWL 96 (104)
T ss_pred HHHHHHcchhhHHhCcchhhhHhHHHHHHHHH
Confidence 35689999887764444455555555555554
No 48
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=31.25 E-value=1.6e+02 Score=32.20 Aligned_cols=26 Identities=19% Similarity=0.537 Sum_probs=19.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy16527 161 IGFTGGVVFMYIQCKAYLHICQRWKA 186 (562)
Q Consensus 161 IGFtGgLVFMYIqCK~YvqLWRRWRA 186 (562)
+|.+|+.+|+.||....+..-.+|-.
T Consensus 141 v~~~ga~~FiliQlIlLvDFah~wne 166 (429)
T PF03348_consen 141 VARVGAFIFILIQLILLVDFAHSWNE 166 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999998877776666644
No 49
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=30.98 E-value=61 Score=26.21 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhHHHHHH
Q psy16527 155 KLIVVVIGFTGGVVFMYI 172 (562)
Q Consensus 155 kLIVVAIGFtGgLVFMYI 172 (562)
.|.|.++|-+|.++|||=
T Consensus 23 iLsV~~Vg~YGF~vWm~Q 40 (47)
T TIGR02972 23 ILSVAGIGGYGFIIWMIQ 40 (47)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677788888889873
No 50
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=30.75 E-value=2.4e+02 Score=33.41 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=5.6
Q ss_pred hHHHHHHHHH
Q psy16527 152 FWIKLIVVVI 161 (562)
Q Consensus 152 FWTkLIVVAI 161 (562)
||+.|..-++
T Consensus 42 f~t~l~~~~~ 51 (774)
T PF03699_consen 42 FWTRLLTRIG 51 (774)
T ss_pred HHHHHHHHHH
Confidence 7776644333
No 51
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=30.67 E-value=41 Score=28.45 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhHHHHHH
Q psy16527 156 LIVVVIGFTGGVVFMYI 172 (562)
Q Consensus 156 LIVVAIGFtGgLVFMYI 172 (562)
|.|-..|-+|.++|||-
T Consensus 35 lsV~~VG~yGFiVWM~Q 51 (62)
T COG4459 35 LSVAFVGGYGFIVWMFQ 51 (62)
T ss_pred HHHHHhcchhHHHHHHH
Confidence 44444566777889874
No 52
>PRK00068 hypothetical protein; Validated
Probab=30.53 E-value=2.1e+02 Score=34.87 Aligned_cols=19 Identities=26% Similarity=0.643 Sum_probs=9.5
Q ss_pred HHHHhccccchh--hHHHHHH
Q psy16527 140 VDEIYTGILEWP--FWIKLIV 158 (562)
Q Consensus 140 AeEIrqGiLEwP--FWTkLIV 158 (562)
.+.++-+.+.|. |||.++.
T Consensus 39 td~lWF~~lgy~~Vf~t~l~t 59 (970)
T PRK00068 39 IDWLWFGEVGYRSVFFTKLVT 59 (970)
T ss_pred HHHHHHHhCCCceeehHHHHH
Confidence 344444444454 7776543
No 53
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.41 E-value=3.5e+02 Score=25.25 Aligned_cols=8 Identities=13% Similarity=0.584 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy16527 155 KLIVVVIG 162 (562)
Q Consensus 155 kLIVVAIG 162 (562)
.++++|+|
T Consensus 42 g~~~lAlg 49 (191)
T PF04156_consen 42 GIALLALG 49 (191)
T ss_pred HHHHHHHH
Confidence 33444444
No 54
>PHA02929 N1R/p28-like protein; Provisional
Probab=29.81 E-value=28 Score=35.45 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=25.4
Q ss_pred CCCCeeeEecCCCCCCCC---CCccCccCCCCCCceEEccccccccccCC
Q psy16527 31 NGFDICRICHCEVTPEAS---PDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~---pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
+....|-||++....... .......|. ...|..|+.+| ++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~W-l~~ 215 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIW-KKE 215 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHH-Hhc
Confidence 356899999865332110 011233455 77999999999 653
No 55
>KOG0804|consensus
Probab=29.29 E-value=32 Score=38.42 Aligned_cols=47 Identities=13% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCCCCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 27 SLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 27 SlSSSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
...-.+-+.|-+|.+.-|+ +-..|-|=.|. ...|.+||++| ....|.
T Consensus 169 ~~~~tELPTCpVCLERMD~-s~~gi~t~~c~-----Hsfh~~cl~~w-----~~~scp 215 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDS-STTGILTILCN-----HSFHCSCLMKW-----WDSSCP 215 (493)
T ss_pred CCCcccCCCcchhHhhcCc-cccceeeeecc-----cccchHHHhhc-----ccCcCh
Confidence 3445688999999765554 44556777777 77999999999 344566
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=28.28 E-value=1.1e+02 Score=31.89 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.6
Q ss_pred cchhhHHHHHHHHH
Q psy16527 148 LEWPFWIKLIVVVI 161 (562)
Q Consensus 148 LEwPFWTkLIVVAI 161 (562)
++-++|..++++++
T Consensus 37 ie~sl~~~~~~~~~ 50 (398)
T PRK10747 37 IETSVTGLAIILIL 50 (398)
T ss_pred EEehHHHHHHHHHH
Confidence 34456654444443
No 57
>PHA03029 hypothetical protein; Provisional
Probab=28.06 E-value=2.7e+02 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q psy16527 121 HAVALTCVIWSLYVLIERTVD 141 (562)
Q Consensus 121 hVIAItCVIWSLYVLIeRTAe 141 (562)
.++|+.-++|...+.+.....
T Consensus 19 lila~igiiwg~llsi~k~ra 39 (92)
T PHA03029 19 LILAIIGIIWGFLLSINKIRA 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666688987777765543
No 58
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.74 E-value=23 Score=38.06 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSD 79 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSd 79 (562)
..+.-|-||+..-...+.-.+.||.= -.|..|+..|.+..++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H-------~FH~~Cv~kW~~~y~~ 362 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDH-------RFHVGCVDKWLLGYSN 362 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCc-------eechhHHHHHHhhhcc
Confidence 45689999975443323445788764 4899999999443443
No 59
>KOG1726|consensus
Probab=27.19 E-value=1.7e+02 Score=29.99 Aligned_cols=18 Identities=6% Similarity=0.172 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy16527 121 HAVALTCVIWSLYVLIER 138 (562)
Q Consensus 121 hVIAItCVIWSLYVLIeR 138 (562)
.+++..+-.|-.|..++.
T Consensus 7 ~v~G~~yPAy~tyKavk~ 24 (225)
T KOG1726|consen 7 LVFGYAYPAYATYKAVKS 24 (225)
T ss_pred HHHHHHhHHHHHHHHHHh
Confidence 344444455555555443
No 60
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=27.04 E-value=40 Score=32.00 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=27.3
Q ss_pred CCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 48 SPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 48 ~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
...--||.|+ .|+|..|-... ..+.++-.|-
T Consensus 31 RRIDL~CGCS-----yyihinC~~hG-FTHRGthhCs 61 (134)
T PF01440_consen 31 RRIDLPCGCS-----YYIHINCHNHG-FTHRGTHHCS 61 (134)
T ss_pred CccccCCCCE-----EEeecccCCCC-cCCCcCccCC
Confidence 3455799999 99999999998 8999999998
No 61
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=26.97 E-value=23 Score=35.23 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=28.8
Q ss_pred CCCCCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccC
Q psy16527 27 SLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHP 76 (562)
Q Consensus 27 SlSSSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLk 76 (562)
.+.+.+...|-||+... ..|.+.+| . ...+..|+.+| +.
T Consensus 12 ~~~~~~~~~CpICld~~---~dPVvT~C--G-----H~FC~~CI~~w-l~ 50 (193)
T PLN03208 12 LVDSGGDFDCNICLDQV---RDPVVTLC--G-----HLFCWPCIHKW-TY 50 (193)
T ss_pred eccCCCccCCccCCCcC---CCcEEcCC--C-----chhHHHHHHHH-HH
Confidence 44556778999998643 46888875 4 55788999999 53
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.74 E-value=4.8e+02 Score=30.54 Aligned_cols=17 Identities=18% Similarity=0.665 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhHHHHh
Q psy16527 128 VIWSLYVLIERTVDEIY 144 (562)
Q Consensus 128 VIWSLYVLIeRTAeEIr 144 (562)
++|-.|++++...+-++
T Consensus 53 ~~~p~wl~~~~~~~~~~ 69 (697)
T PF09726_consen 53 YLWPFWLLLRSVYDSFK 69 (697)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46767776655444443
No 63
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=26.55 E-value=79 Score=25.05 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhHHHHHH
Q psy16527 155 KLIVVVIGFTGGVVFMYI 172 (562)
Q Consensus 155 kLIVVAIGFtGgLVFMYI 172 (562)
.|.|.++|-+|.++|||=
T Consensus 18 iLsV~~V~~YGF~vWm~Q 35 (42)
T TIGR02973 18 VLSVITVGGYGFAVWMYQ 35 (42)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677788888899873
No 64
>KOG3618|consensus
Probab=26.53 E-value=1.1e+02 Score=36.94 Aligned_cols=15 Identities=33% Similarity=1.116 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy16527 122 AVALTCVIWSLYVLI 136 (562)
Q Consensus 122 VIAItCVIWSLYVLI 136 (562)
-|++.|+.|++|+.+
T Consensus 87 YI~~~~l~W~lYfav 101 (1318)
T KOG3618|consen 87 YIGFACLLWSLYFAV 101 (1318)
T ss_pred HHHHHHHHHHHHhee
Confidence 467788999999755
No 65
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=26.44 E-value=3.1e+02 Score=21.29 Aligned_cols=18 Identities=28% Similarity=0.726 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhHHHH
Q psy16527 153 WIKLIVVVIGFTGGVVFM 170 (562)
Q Consensus 153 WTkLIVVAIGFtGgLVFM 170 (562)
|-.++.+.+|+.+++.-+
T Consensus 33 ~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 33 WFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566667776665433
No 66
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=26.17 E-value=89 Score=31.05 Aligned_cols=10 Identities=10% Similarity=0.219 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q psy16527 166 GVVFMYIQCK 175 (562)
Q Consensus 166 gLVFMYIqCK 175 (562)
.+++|++.+|
T Consensus 240 ~Fi~mvl~ir 249 (251)
T PF09753_consen 240 VFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHhe
Confidence 3445555444
No 67
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=26.04 E-value=8.9 Score=36.31 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCeeeEecCCCCCCCCCCccCccCCCCCCc---eEEcccccccc
Q psy16527 32 GFDICRICHCEVTPEASPDVSPAYCFWFSPL---TSIRHACSSGS 73 (562)
Q Consensus 32 s~diCRIChcEgd~e~~pLISPC~Cs~~GSL---kyVHqsCL~rW 73 (562)
....|+||...-...++-..-+| - |++ +..|..|+.+|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~--~--g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTD--G--GTLNLEKMFCADCDKRW 65 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEec--C--CeehHHHHHHHHHHHHH
Confidence 35689999865543233344454 4 556 57899999999
No 68
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=25.13 E-value=4.4e+02 Score=25.77 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhhhH
Q psy16527 152 FWIKLIVVVIGFTGGV 167 (562)
Q Consensus 152 FWTkLIVVAIGFtGgL 167 (562)
+||+++-+++.++.++
T Consensus 60 ~~tl~~yl~ial~nAv 75 (153)
T PRK14584 60 LTTIALYLAIAAFNAV 75 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455544444444433
No 69
>PRK12438 hypothetical protein; Provisional
Probab=24.63 E-value=3.2e+02 Score=33.48 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=12.2
Q ss_pred HHHHhccccchh--hHHHHHHHHHHH
Q psy16527 140 VDEIYTGILEWP--FWIKLIVVVIGF 163 (562)
Q Consensus 140 AeEIrqGiLEwP--FWTkLIVVAIGF 163 (562)
.++++-+.+.|. |||.|+.-.+.|
T Consensus 41 td~lWf~~lgy~~Vf~t~l~tr~~Lf 66 (991)
T PRK12438 41 TDWLWFGEVGFRSVWITVLLTRLALF 66 (991)
T ss_pred HHHHHHHhCCCceehhHHHHHHHHHH
Confidence 444555445554 777664433333
No 70
>KOG0802|consensus
Probab=24.56 E-value=23 Score=39.03 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCCCeeeEecCCCCCCCC--CCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEAS--PDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~--pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|.||+++-....+ +-.-|| . .-.|..||..| ++. ...|-
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C--~-----Hifh~~CL~~W-~er--~qtCP 334 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPC--G-----HIFHDSCLRSW-FER--QQTCP 334 (543)
T ss_pred hcCCeeeeechhhccccccccceeec--c-----cchHHHHHHHH-HHH--hCcCC
Confidence 457899999866543222 344444 3 77899999999 654 33454
No 71
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=24.36 E-value=1.6e+02 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=25.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q psy16527 157 IVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMS 196 (562)
Q Consensus 157 IVVAIGFtGgLVFMYIqCK~YvqLWRRWRA~NrE~~~gm~ 196 (562)
+++++.++.=.++-|.|.|.|-+-+++.+ +.|.-+++
T Consensus 6 i~~~~~~~lQ~~l~~~Qik~f~~~~~~l~---~~G~V~iG 42 (109)
T PF06923_consen 6 ILLVIAWLLQILLGWFQIKNFNKAYKELR---KKGRVGIG 42 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcEEEe
Confidence 33444455556778999999999999988 44554444
No 72
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=23.87 E-value=4.9e+02 Score=23.46 Aligned_cols=6 Identities=33% Similarity=1.220 Sum_probs=2.6
Q ss_pred CeeeEe
Q psy16527 34 DICRIC 39 (562)
Q Consensus 34 diCRIC 39 (562)
..|..|
T Consensus 49 ~~C~~C 54 (174)
T PF01529_consen 49 KYCSTC 54 (174)
T ss_pred EECccc
Confidence 444444
No 73
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=23.74 E-value=1.5e+02 Score=27.55 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHc
Q psy16527 155 KLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYN 188 (562)
Q Consensus 155 kLIVVAIGFtGgLVFMYIqCK~YvqLWRRWRA~N 188 (562)
+.+++++.|+.=+++-|.|.|.|-+.|++.+..-
T Consensus 5 LIi~~~~a~llQ~~lg~~Qik~Fn~~~~~L~~~G 38 (118)
T PRK10234 5 LITVAVIAWCAQLALGGWQISRFNRAFDTLCQQG 38 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445566666778999999988888888853
No 74
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=23.50 E-value=2.3e+02 Score=32.22 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccccchh----hHHHHHHHH
Q psy16527 110 ERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWP----FWIKLIVVV 160 (562)
Q Consensus 110 ERRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrqGiLEwP----FWTkLIVVA 160 (562)
.|.++..+..||++-..+.+...+++.---.-.++.|...|- ||.+++.+.
T Consensus 8 aR~QFA~T~~fH~lFvpltiGL~~~lai~E~~~~rtg~~~y~~larFw~Klf~In 62 (514)
T PRK15035 8 SRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGIN 62 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 366777777888765555333222221111113444444443 888876554
No 75
>PF15050 SCIMP: SCIMP protein
Probab=23.50 E-value=79 Score=30.15 Aligned_cols=32 Identities=31% Similarity=0.616 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH
Q psy16527 152 FWIKLIVVVIGFT--GGVVFMYIQCKAYLHICQRW 184 (562)
Q Consensus 152 FWTkLIVVAIGFt--GgLVFMYIqCK~YvqLWRRW 184 (562)
||++|.|. |-++ |.-+.+|.+||..++.=++|
T Consensus 8 FWiiLAVa-II~vS~~lglIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 8 FWIILAVA-IILVSVVLGLILYCVCRWQLRQGKKW 41 (133)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccc
Confidence 78765443 2222 22245677788665543444
No 76
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=23.46 E-value=5.6e+02 Score=26.30 Aligned_cols=9 Identities=0% Similarity=0.161 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy16527 129 IWSLYVLIE 137 (562)
Q Consensus 129 IWSLYVLIe 137 (562)
+.++|+++.
T Consensus 247 ~~~~~~~~~ 255 (325)
T PRK10714 247 SLAVLLVVL 255 (325)
T ss_pred HHHHHHHHH
Confidence 334444443
No 77
>PRK00523 hypothetical protein; Provisional
Probab=23.14 E-value=1.5e+02 Score=25.86 Aligned_cols=6 Identities=33% Similarity=0.102 Sum_probs=2.7
Q ss_pred HHhhhH
Q psy16527 162 GFTGGV 167 (562)
Q Consensus 162 GFtGgL 167 (562)
|++||+
T Consensus 18 G~~~Gf 23 (72)
T PRK00523 18 GGIIGY 23 (72)
T ss_pred HHHHHH
Confidence 444443
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.08 E-value=1.3e+02 Score=31.40 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=13.7
Q ss_pred cchhhHH---HHHHHHHHHhhhHHHHHHHHH
Q psy16527 148 LEWPFWI---KLIVVVIGFTGGVVFMYIQCK 175 (562)
Q Consensus 148 LEwPFWT---kLIVVAIGFtGgLVFMYIqCK 175 (562)
+.|+-|+ .++++++.++..++.+|+..+
T Consensus 30 i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~ 60 (398)
T PRK10747 30 IQTDNYNIETSVTGLAIILILAMVVLFAIEW 60 (398)
T ss_pred EEECCEEEEehHHHHHHHHHHHHHHHHHHHH
Confidence 3455453 456555555554444444333
No 79
>KOG4220|consensus
Probab=22.68 E-value=6.6e+02 Score=28.69 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q psy16527 168 VFMYIQCKAYLHICQRWKAYNS 189 (562)
Q Consensus 168 VFMYIqCK~YvqLWRRWRA~Nr 189 (562)
+...|+|..|.+|||.=+..-+
T Consensus 204 lPVtiM~~LY~rIyret~kR~k 225 (503)
T KOG4220|consen 204 LPVTIMTILYWRIYRETRKRQK 225 (503)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888777776665555
No 80
>KOG2678|consensus
Probab=22.54 E-value=87 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=14.4
Q ss_pred cchhhHHHHHHHHHHHhhhHHHH
Q psy16527 148 LEWPFWIKLIVVVIGFTGGVVFM 170 (562)
Q Consensus 148 LEwPFWTkLIVVAIGFtGgLVFM 170 (562)
..|-.|+.+++|+++|+..+++|
T Consensus 215 s~wf~~~miI~v~~sFVsMilii 237 (244)
T KOG2678|consen 215 SYWFYITMIIFVILSFVSMILII 237 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766555444
No 81
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=22.52 E-value=83 Score=34.32 Aligned_cols=22 Identities=27% Similarity=0.729 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16527 111 RRKLLCAVLFHAVALTCVIWSL 132 (562)
Q Consensus 111 RRkLmCsVLFhVIAItCVIWSL 132 (562)
.+-|+++|++|++.|.++||+.
T Consensus 12 ~~aiiiSv~LHvlLi~lLi~gs 33 (387)
T PRK09510 12 KRAIIISVVLHIILFALLIWSS 33 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999988875
No 82
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=22.41 E-value=7.3e+02 Score=27.36 Aligned_cols=49 Identities=24% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhccccchh----hHHHHHHHH
Q psy16527 111 RRKLLCAVLFHAVALTCVIWSLYVL-IERTVDEIYTGILEWP----FWIKLIVVV 160 (562)
Q Consensus 111 RRkLmCsVLFhVIAItCVIWSLYVL-IeRTAeEIrqGiLEwP----FWTkLIVVA 160 (562)
|.++..++.||++...+.+....++ +-. .-.++.|...|- ||++++++.
T Consensus 3 R~qfa~t~~~Hi~fv~~tiGl~~~~~i~e-~~~~rt~d~~y~~lar~w~k~~~i~ 56 (436)
T PF01654_consen 3 RLQFALTAGFHILFVPLTIGLALLLAILE-TLYYRTGDPRYDRLARFWGKLFAIN 56 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 5566677778876655543332222 111 112344443332 777765543
No 83
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=22.35 E-value=2.3e+02 Score=31.73 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccccchh----hHHHHHHHHH
Q psy16527 110 ERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWP----FWIKLIVVVI 161 (562)
Q Consensus 110 ERRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrqGiLEwP----FWTkLIVVAI 161 (562)
.|.++..+++||++-.++.+...++++--..-.++.+...|- ||++++++.+
T Consensus 8 sR~qFa~t~~fHilFv~lTiGl~~~lai~e~~~~~t~d~~y~~~tkfw~kvf~InF 63 (457)
T COG1271 8 SRLQFALTALFHILFVPLTIGLAFMLAIMETLYVKTKDEIYKRMTKFWGKVFAINF 63 (457)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 477788888899876665444333332111123344443342 8888766543
No 84
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=22.01 E-value=3.2e+02 Score=24.21 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhHHHHHH
Q psy16527 155 KLIVVVIGFTGGVVFMYI 172 (562)
Q Consensus 155 kLIVVAIGFtGgLVFMYI 172 (562)
.|++.+++|.|- +++.+
T Consensus 51 ALl~~~~AfsgL-L~lHL 67 (77)
T PF12292_consen 51 ALLFFCFAFSGL-LFLHL 67 (77)
T ss_pred HHHHHHHHHHHH-HHHHH
Confidence 456666777774 34444
No 85
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.94 E-value=1.1e+02 Score=27.96 Aligned_cols=6 Identities=33% Similarity=1.204 Sum_probs=2.3
Q ss_pred hHHHHH
Q psy16527 152 FWIKLI 157 (562)
Q Consensus 152 FWTkLI 157 (562)
.|.+++
T Consensus 23 Wwll~~ 28 (146)
T PF14316_consen 23 WWLLLA 28 (146)
T ss_pred HHHHHH
Confidence 443333
No 86
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=21.83 E-value=7.8e+02 Score=24.30 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=5.3
Q ss_pred EEEEEeeccCC
Q psy16527 347 WHIQIEKTSAG 357 (562)
Q Consensus 347 ~~~~~~~~~~~ 357 (562)
+.|.|+.+..|
T Consensus 280 ~~i~V~D~G~G 290 (356)
T PRK10755 280 AVLAVEDEGPG 290 (356)
T ss_pred EEEEEEECCCC
Confidence 45555544433
No 87
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=21.56 E-value=43 Score=32.83 Aligned_cols=10 Identities=60% Similarity=0.953 Sum_probs=8.4
Q ss_pred EEEecCCCCC
Q psy16527 412 IVIKFGGSPN 421 (562)
Q Consensus 412 ~~~~~~~~~~ 421 (562)
||||||||-=
T Consensus 2 ~ViK~GGs~l 11 (244)
T cd04260 2 IVQKFGGTSV 11 (244)
T ss_pred EEEEECchhc
Confidence 7999999754
No 88
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=21.30 E-value=2.7e+02 Score=31.74 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhccccchh----hHHHHHHHHH
Q psy16527 110 ERRKLLCAVLFHAVALTCVIWSLYV-LIERTVDEIYTGILEWP----FWIKLIVVVI 161 (562)
Q Consensus 110 ERRkLmCsVLFhVIAItCVIWSLYV-LIeRTAeEIrqGiLEwP----FWTkLIVVAI 161 (562)
.|.++..+..||++-..+.+...++ .+-.+ -.++.|...|- ||.+++.+.+
T Consensus 8 sR~QFA~T~~fH~lFvpltiGL~~llai~E~-~~~rtg~~~y~~larFW~Klf~InF 63 (522)
T PRK15097 8 SRLQFALTAMYHFLFVPLTLGMAFLLAIMET-VYVLSGKQIYKDMTKFWGKLFGINF 63 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3667777778887665554332222 22111 13455554453 8888765543
No 89
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.82 E-value=64 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG 72 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~r 72 (562)
.....|.+|+..-.. .--.+.|| | ..+|..|..|
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~-----~--~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPC-----G--HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCC-----C--eEEecccccC
Confidence 456779999754332 11225554 3 6789999865
No 90
>KOG2302|consensus
Probab=20.69 E-value=1.5e+02 Score=36.76 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCcccc-cCCCCCCccCCC
Q psy16527 177 YLHICQRWKAYNSEGGPGMSNLRPIRR-SLTHPLGLFAPT 215 (562)
Q Consensus 177 YvqLWRRWRA~NrE~~~gm~nlrP~~~-~~~~pl~l~~~t 215 (562)
.+.++|-+|+.-- +||.|+ |++.-|+|.+-|
T Consensus 1221 ILgVlrvLRlLRt--------lRpLRviSra~glklVveT 1252 (1956)
T KOG2302|consen 1221 ILGVLRVLRLLRT--------LRPLRVISRAPGLKLVVET 1252 (1956)
T ss_pred HHHHHHHHHHHHH--------hhHHHHHhhcccHHHHHHH
Confidence 3456666666544 899999 999999998876
No 91
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=20.11 E-value=23 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=20.2
Q ss_pred eeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC
Q psy16527 35 ICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 35 iCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
.|-||+..-. ..-.+.|| . ..+|..|+.+| ++.
T Consensus 1 ~C~iC~~~~~--~~~~~~~C--~-----H~~c~~C~~~~-~~~ 33 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPC--G-----HVFCRSCIDKW-LKS 33 (45)
T ss_pred CCCcCchhhh--CceEecCC--C-----ChhcHHHHHHH-HHh
Confidence 3778875431 12234444 3 45799999999 553
Done!