Query psy16527
Match_columns 562
No_of_seqs 179 out of 518
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 23:34:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8s_A Cellular modulator of i 99.4 1.6E-13 5.4E-18 112.2 2.2 70 22-99 5-78 (80)
2 1vyx_A ORF K3, K3RING; zinc-bi 99.3 9.3E-14 3.2E-18 108.4 -1.2 52 31-88 4-57 (60)
3 1iym_A EL5; ring-H2 finger, ub 92.3 0.067 2.3E-06 38.6 2.3 40 31-77 3-42 (55)
4 2ect_A Ring finger protein 126 87.4 0.3 1E-05 37.5 2.5 44 31-84 13-56 (78)
5 2ct0_A Non-SMC element 1 homol 86.8 0.29 1E-05 39.8 2.2 44 31-84 13-56 (74)
6 2ep4_A Ring finger protein 24; 83.2 0.28 9.5E-06 37.4 0.5 44 31-84 13-56 (74)
7 2ecl_A Ring-box protein 2; RNF 82.3 0.43 1.5E-05 37.9 1.2 45 31-84 13-68 (81)
8 2kiz_A E3 ubiquitin-protein li 80.3 0.45 1.5E-05 35.8 0.7 44 31-84 12-55 (69)
9 2l0b_A E3 ubiquitin-protein li 79.3 0.34 1.2E-05 39.1 -0.3 44 31-84 38-81 (91)
10 2ecm_A Ring finger and CHY zin 79.3 0.44 1.5E-05 34.1 0.3 40 31-78 3-43 (55)
11 2d8t_A Dactylidin, ring finger 78.2 0.89 3.1E-05 34.6 1.8 42 30-84 12-53 (71)
12 1x4j_A Ring finger protein 38; 77.8 0.31 1.1E-05 37.4 -0.9 44 31-84 21-64 (75)
13 2ecn_A Ring finger protein 141 72.0 2.3 7.7E-05 31.9 2.6 40 31-84 13-52 (70)
14 2ysl_A Tripartite motif-contai 69.8 2.7 9.4E-05 31.5 2.6 43 31-84 18-61 (73)
15 2ysj_A Tripartite motif-contai 69.6 2.1 7.1E-05 31.6 1.9 35 31-76 18-52 (63)
16 2ecj_A Tripartite motif-contai 68.8 3 0.0001 29.8 2.5 42 31-83 13-55 (58)
17 1e4u_A Transcriptional repress 68.6 3.3 0.00011 33.2 3.0 46 31-84 9-54 (78)
18 3ztg_A E3 ubiquitin-protein li 65.5 1.4 4.9E-05 34.7 0.3 44 31-84 11-54 (92)
19 2ecw_A Tripartite motif-contai 64.9 1.6 5.5E-05 33.2 0.5 43 31-84 17-63 (85)
20 2ct2_A Tripartite motif protei 63.2 1.6 5.6E-05 33.7 0.2 46 31-84 13-60 (88)
21 1v87_A Deltex protein 2; ring- 59.0 1.8 6.1E-05 35.5 -0.3 13 63-76 63-75 (114)
22 2yur_A Retinoblastoma-binding 58.3 2 6.8E-05 33.1 -0.1 43 32-84 14-56 (74)
23 2ecv_A Tripartite motif-contai 56.6 5.2 0.00018 30.3 2.0 36 31-77 17-52 (85)
24 1chc_A Equine herpes virus-1 r 56.2 3.2 0.00011 30.8 0.8 36 31-76 3-38 (68)
25 4a0k_B E3 ubiquitin-protein li 56.0 3 0.0001 36.4 0.6 45 32-84 47-104 (117)
26 2egp_A Tripartite motif-contai 54.3 7.1 0.00024 29.6 2.4 36 31-77 10-45 (79)
27 3dpl_R Ring-box protein 1; ubi 48.6 6.9 0.00024 33.2 1.7 19 63-84 75-93 (106)
28 2ea6_A Ring finger protein 4; 44.3 2.8 9.6E-05 30.8 -1.2 40 30-77 12-55 (69)
29 3k1l_B Fancl; UBC, ring, RWD, 41.5 7 0.00024 40.9 0.7 40 31-77 306-349 (381)
30 3ng2_A RNF4, snurf, ring finge 40.3 2.2 7.5E-05 31.8 -2.4 48 27-84 4-55 (71)
31 2ecy_A TNF receptor-associated 38.9 9.1 0.00031 28.4 0.8 42 31-84 13-54 (66)
32 2csy_A Zinc finger protein 183 38.6 6.9 0.00024 30.2 0.1 35 31-76 13-47 (81)
33 1t1h_A Gspef-atpub14, armadill 38.2 7.9 0.00027 29.5 0.4 42 31-84 6-47 (78)
34 3l11_A E3 ubiquitin-protein li 36.5 6.6 0.00023 32.3 -0.3 42 31-84 13-54 (115)
35 4ayc_A E3 ubiquitin-protein li 36.2 6.7 0.00023 33.6 -0.3 38 34-84 54-91 (138)
36 1jm7_A BRCA1, breast cancer ty 31.8 12 0.00042 30.1 0.6 41 33-84 21-62 (112)
37 3nw0_A Non-structural maintena 31.7 13 0.00044 35.7 0.8 42 32-84 179-221 (238)
38 2xeu_A Ring finger protein 4; 29.8 2.6 8.9E-05 30.6 -3.4 38 32-77 2-43 (64)
39 3uon_A Human M2 muscarinic ace 23.3 1.6E+02 0.0053 27.8 6.5 25 163-187 192-216 (467)
40 2ysm_A Myeloid/lymphoid or mix 22.4 72 0.0025 26.5 3.6 37 30-73 4-40 (111)
41 3fl2_A E3 ubiquitin-protein li 22.1 9.8 0.00033 31.7 -1.7 40 33-84 52-91 (124)
42 1wev_A Riken cDNA 1110020M19; 21.6 43 0.0015 27.5 2.1 46 33-84 16-67 (88)
No 1
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-13 Score=112.22 Aligned_cols=70 Identities=34% Similarity=0.582 Sum_probs=55.2
Q ss_pred CCCCcCCCCCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc----cccccccccCCcc
Q psy16527 22 SSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLS 97 (562)
Q Consensus 22 sS~tSSlSSSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE----eF~ms~reTKlKP 97 (562)
.|.. +..+.+.+.||||+++.+. +++|+.||+|+ ||++++|+.||++| +..++...|+ .|.+ +++++|
T Consensus 5 ~s~~-s~~~~~~~~C~IC~~~~~~-~~~l~~pC~C~--Gs~h~fH~~Cl~~W-l~~~~~~~CplCr~~~~~---~~~~~P 76 (80)
T 2d8s_A 5 SSGT-SITPSSQDICRICHCEGDD-ESPLITPCHCT--GSLHFVHQACLQQW-IKSSDTRCCELCKYEFIM---ETKLSG 76 (80)
T ss_dssp CCCC-CCCCTTSCCCSSSCCCCCS-SSCEECSSSCC--SSSCCEETTHHHHH-HHHHCCSBCSSSCCBCCC---CCCSCC
T ss_pred cCCC-CCCCCCCCCCeEcCccccC-CCeeEeccccC--CcCCeeCHHHHHHH-HhhCCCCCCCCCCCeeec---CcccCC
Confidence 3444 3344678999999976654 67899999999 99999999999999 8887777899 5555 567777
Q ss_pred cc
Q psy16527 98 VR 99 (562)
Q Consensus 98 LR 99 (562)
+.
T Consensus 77 ~~ 78 (80)
T 2d8s_A 77 PS 78 (80)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 2
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.32 E-value=9.3e-14 Score=108.38 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=44.8
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc--cccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA--SFSS 88 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE--eF~m 88 (562)
.+.+.||||+.++ +++|+.||+|+ ||++|||+.||++| +..+++..|| ++.|
T Consensus 4 ~~~~~CrIC~~~~---~~~l~~PC~C~--gs~~~~H~~Cl~~W-~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEEL---GNERFRACGCT--GELENVHRSCLSTW-LTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEEC---SCCCCCSCCCS--SGGGSCCHHHHHHH-HHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCC---CCceecCcCCC--CchhhhHHHHHHHH-HHhCCCCccCCCCCee
Confidence 5788999999764 35799999999 99999999999999 8888888999 4444
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.30 E-value=0.067 Score=38.55 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
.+...|-||+..-..++.+...| .|. ...|..|+.+| ++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~C~-----H~f~~~Ci~~w-~~~ 42 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP-RCG-----HGFHAECVDMW-LGS 42 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS-SSC-----CEECTTHHHHT-TTT
T ss_pred CCCCcCccCCccccCCCceEECC-CCC-----CcccHHHHHHH-HHc
Confidence 35678999986554423344555 465 67999999999 654
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=87.36 E-value=0.3 Score=37.54 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|.||+..-.......+.| |. ...|..|+.+| ++.+ ..|-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~--C~-----H~fc~~Ci~~~-~~~~--~~CP 56 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP--CN-----HLFHDSCIVPW-LEQH--DSCP 56 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT--TS-----CEEETTTTHHH-HTTT--CSCT
T ss_pred CCCCCCeeCCccccCCCCEEEeC--CC-----CeecHHHHHHH-HHcC--CcCc
Confidence 45689999986543212122345 55 67899999999 6543 3454
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.84 E-value=0.29 Score=39.80 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=30.5
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
...+.|-||+....+ + ..-+ .|. .-.|..|+.+| ++.+....|-
T Consensus 13 ~~i~~C~IC~~~i~~-g--~~C~-~C~-----h~fH~~Ci~kW-l~~~~~~~CP 56 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ-G--QSCE-TCG-----IRMHLPCVAKY-FQSNAEPRCP 56 (74)
T ss_dssp SSSCBCSSSCCBCSS-S--EECS-SSC-----CEECHHHHHHH-STTCSSCCCT
T ss_pred CCCCcCcchhhHccc-C--CccC-CCC-----chhhHHHHHHH-HHhcCCCCCC
Confidence 455899999865543 1 1111 666 78899999999 8777556665
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.24 E-value=0.28 Score=37.39 Aligned_cols=44 Identities=16% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|.||+..-.. ...+.-..|. ...|..|+.+| ++... .|-
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~~~~~C~-----H~f~~~Ci~~~-~~~~~--~CP 56 (74)
T 2ep4_A 13 NLHELCAVCLEDFKP--RDELGICPCK-----HAFHRKCLIKW-LEVRK--VCP 56 (74)
T ss_dssp CCSCBCSSSCCBCCS--SSCEEEETTT-----EEEEHHHHHHH-HHHCS--BCT
T ss_pred CCCCCCcCCCcccCC--CCcEEEcCCC-----CEecHHHHHHH-HHcCC--cCC
Confidence 456899999865432 1222212366 77999999999 65432 455
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.30 E-value=0.43 Score=37.88 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCCCeeeEecCCCCC----------CCC-CCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTP----------EAS-PDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~----------e~~-pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+.+.|-||+..-.. .+. ....| .|. ...|..|+.+| ++.+. .|-
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~-----H~FH~~Ci~~W-l~~~~--~CP 68 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN-----HSFHNCCMSLW-VKQNN--RCP 68 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS-----CEEEHHHHHHH-TTTCC--BCT
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeC-CCC-----CccChHHHHHH-HHhCC--CCC
Confidence 467889999754432 112 22333 676 88999999999 76543 555
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=80.30 E-value=0.45 Score=35.76 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=28.9
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|.||+..-.....+.+.| |. ...|..|+.+| +..+. .|-
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~--C~-----H~fc~~Ci~~~-~~~~~--~CP 55 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP--CM-----HLFHQVCVDQW-LITNK--KCP 55 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT--TS-----CEEEHHHHHHH-HHHCS--BCT
T ss_pred CCCCCCeeCCccccCCCcEEEeC--CC-----CHHHHHHHHHH-HHcCC--CCc
Confidence 46678999976543323344566 45 66899999999 65432 355
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=79.32 E-value=0.34 Score=39.06 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|-||+..-...+.....| |. ...|..|+.+| ++.+ ..|-
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~--C~-----H~Fh~~Ci~~w-l~~~--~~CP 81 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELP--CH-----HYFHKPCVSIW-LQKS--GTCP 81 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEET--TT-----EEEEHHHHHHH-HTTT--CBCT
T ss_pred CCCCCCcccChhhcCCCcEEecC--CC-----ChHHHHHHHHH-HHcC--CcCc
Confidence 45678999985443322334566 65 78999999999 6543 3555
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=79.28 E-value=0.44 Score=34.09 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=27.1
Q ss_pred CCCCeeeEecCCCCC-CCCCCccCccCCCCCCceEEccccccccccCCC
Q psy16527 31 NGFDICRICHCEVTP-EASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS 78 (562)
Q Consensus 31 Ss~diCRIChcEgd~-e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS 78 (562)
.+...|.||+..-.. +..+.+.|| . ..+|..|+.+| ++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C--g-----H~fc~~Ci~~~-~~~~ 43 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPC--G-----HLLHRTCYEEM-LKEG 43 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTT--S-----CEEETTHHHHH-HHHT
T ss_pred CCCCcCcccChhhcCCCcCeEecCC--C-----CcccHHHHHHH-HHcC
Confidence 467889999865322 123456664 4 67999999999 6543
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.22 E-value=0.89 Score=34.59 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=29.3
Q ss_pred CCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 30 SNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 30 SSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
..+...|.||+..- ..+...| |. ...|..|+.+| +... ..|-
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~~--Cg-----H~fC~~Ci~~~-~~~~--~~CP 53 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSLP--CK-----HVFCYLCVKGA-SWLG--KRCA 53 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEET--TT-----EEEEHHHHHHC-TTCS--SBCS
T ss_pred CCCCCCCccCCccc---CCCEEcc--CC-----CHHHHHHHHHH-HHCC--CcCc
Confidence 35668899998543 3566677 55 66899999999 6543 3454
No 12
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.81 E-value=0.31 Score=37.43 Aligned_cols=44 Identities=18% Similarity=0.517 Sum_probs=28.6
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+...|.||+..-...+.....| |. ...|..|+.+| ++.+ ..|-
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~--C~-----H~fh~~Ci~~w-~~~~--~~CP 64 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLP--CN-----HEFHAKCVDKW-LKAN--RTCP 64 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEET--TT-----EEEETTHHHHH-HHHC--SSCT
T ss_pred CCCCCCeECCcccCCCCeEEEEC--CC-----CHhHHHHHHHH-HHcC--CcCc
Confidence 46789999985533212123456 55 77999999999 6533 3454
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.02 E-value=2.3 Score=31.94 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=27.8
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|.||+..-. . .+.|| . ...|..|+.+| +. ....|-
T Consensus 13 ~~~~~C~IC~~~~~---~-~~~~C--g-----H~fc~~Ci~~~-~~--~~~~CP 52 (70)
T 2ecn_A 13 TDEEECCICMDGRA---D-LILPC--A-----HSFCQKCIDKW-SD--RHRNCP 52 (70)
T ss_dssp CCCCCCSSSCCSCC---S-EEETT--T-----EEECHHHHHHS-SC--CCSSCH
T ss_pred CCCCCCeeCCcCcc---C-cccCC--C-----CcccHHHHHHH-HH--CcCcCC
Confidence 45689999985432 2 66774 4 66899999999 65 234555
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.81 E-value=2.7 Score=31.52 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC-CCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT-SDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks-Sdt~~CE 84 (562)
.....|.||+..- ..|.+.| |. ...|..|+.+| ++. .....|-
T Consensus 18 ~~~~~C~IC~~~~---~~~~~~~--Cg-----H~fC~~Ci~~~-~~~~~~~~~CP 61 (73)
T 2ysl_A 18 QEEVICPICLDIL---QKPVTID--CG-----HNFCLKCITQI-GETSCGFFKCP 61 (73)
T ss_dssp CCCCBCTTTCSBC---SSEEECT--TC-----CEEEHHHHHHH-CSSSCSCCCCS
T ss_pred ccCCEeccCCccc---CCeEEcC--CC-----ChhhHHHHHHH-HHcCCCCCCCC
Confidence 4668999998533 3466665 55 66899999999 653 3444565
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.55 E-value=2.1 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHP 76 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLk 76 (562)
.....|.||+..- ..|.+.| |. ...|..|+.+| ++
T Consensus 18 ~~~~~C~IC~~~~---~~p~~~~--Cg-----H~fC~~Ci~~~-~~ 52 (63)
T 2ysj_A 18 QEEVICPICLDIL---QKPVTID--CG-----HNFCLKCITQI-GE 52 (63)
T ss_dssp CCCCBCTTTCSBC---SSCEECT--TS-----SEECHHHHHHH-HH
T ss_pred ccCCCCCcCCchh---CCeEEeC--CC-----CcchHHHHHHH-HH
Confidence 4668999998533 3577666 44 66899999999 65
No 16
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.75 E-value=3 Score=29.83 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC-CCcccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT-SDVANC 83 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks-Sdt~~C 83 (562)
.....|.||+..- ..|.+.|| . ...|..|+.+| +.. .....|
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~C--g-----H~fC~~Ci~~~-~~~~~~~~~C 55 (58)
T 2ecj_A 13 QVEASCSVCLEYL---KEPVIIEC--G-----HNFCKACITRW-WEDLERDFPC 55 (58)
T ss_dssp CCCCBCSSSCCBC---SSCCCCSS--C-----CCCCHHHHHHH-TTSSCCSCCC
T ss_pred ccCCCCccCCccc---CccEeCCC--C-----CccCHHHHHHH-HHhcCCCCCC
Confidence 4568999998543 35677774 4 44799999999 553 333444
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=68.61 E-value=3.3 Score=33.21 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.1
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+...|-||++..+. ..+.+.||.|. ..+++.|+.+| ... ....|-
T Consensus 9 ~~~~~CpICle~~~~-~d~~~~p~~CG-----H~fC~~Cl~~~-~~~-~~~~CP 54 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-DDINFFPCTCG-----YQICRFCWHRI-RTD-ENGLCP 54 (78)
T ss_dssp CCCCBCTTTCCBCCT-TTTTCCSSTTS-----CCCCHHHHHHH-TTS-SCSBCT
T ss_pred ccCCcCCccCccCcc-ccccccccCCC-----CCcCHHHHHHH-Hhc-CCCCCC
Confidence 466789999865432 45678899998 66889999998 443 344566
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=65.48 E-value=1.4 Score=34.74 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=31.3
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.....|-||+..- ..|.+.|| |. ...+..|+.+| +..++...|-
T Consensus 11 ~~~~~C~IC~~~~---~~p~~~~~-Cg-----H~fC~~Ci~~~-~~~~~~~~CP 54 (92)
T 3ztg_A 11 PDELLCLICKDIM---TDAVVIPC-CG-----NSYCDECIRTA-LLESDEHTCP 54 (92)
T ss_dssp CTTTEETTTTEEC---SSCEECTT-TC-----CEECHHHHHHH-HHHCTTCCCT
T ss_pred CcCCCCCCCChhh---cCceECCC-CC-----CHHHHHHHHHH-HHhcCCCcCc
Confidence 4668899997432 35777773 55 66789999999 7655555666
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.87 E-value=1.6 Score=33.19 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=29.3
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCC----Cccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS----DVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS----dt~~CE 84 (562)
.....|.||+..- ..|.+.| |. ..+|..|+.+| +..+ +...|-
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~--Cg-----H~fC~~Ci~~~-~~~~~~~~~~~~CP 63 (85)
T 2ecw_A 17 KEEVTCPICLELL---KEPVSAD--CN-----HSFCRACITLN-YESNRNTDGKGNCP 63 (85)
T ss_dssp CTTTSCTTTCSCC---SSCEECT--TS-----CCBCHHHHHHH-HHHSBCTTSCBCCT
T ss_pred ccCCCCcCCChhh---CcceeCC--CC-----CHHHHHHHHHH-HHhccCCCCCCCCC
Confidence 3567899998543 3567777 44 55799999999 6542 244555
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.22 E-value=1.6 Score=33.71 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=29.8
Q ss_pred CCCCeeeEecCCCCCCCC-CCccCccCCCCCCceEEccccccccccCCC-Cccccc
Q psy16527 31 NGFDICRICHCEVTPEAS-PDVSPAYCFWFSPLTSIRHACSSGSSHPTS-DVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~-pLISPC~Cs~~GSLkyVHqsCL~rWrLksS-dt~~CE 84 (562)
.+...|.||+..-...+. +.+.| |. ..+|..|+.+| ++.+ +...|-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~--Cg-----H~fC~~Ci~~~-~~~~~~~~~CP 60 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH--CG-----HTICRQCLEKL-LASSINGVRCP 60 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS--SS-----CEEEHHHHHHH-HHHCSSCBCCT
T ss_pred cCCCCCccCCccccccCCCeEECC--CC-----ChhhHHHHHHH-HHcCCCCcCCC
Confidence 456789999854332111 56666 45 67899999999 6543 334555
No 21
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=58.95 E-value=1.8 Score=35.45 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=11.4
Q ss_pred eEEccccccccccC
Q psy16527 63 TSIRHACSSGSSHP 76 (562)
Q Consensus 63 kyVHqsCL~rWrLk 76 (562)
...|..||.+| +.
T Consensus 63 H~Fh~~Ci~~w-l~ 75 (114)
T 1v87_A 63 HAFHLLCLLAM-YC 75 (114)
T ss_dssp CEECHHHHHHH-HH
T ss_pred CcccHHHHHHH-HH
Confidence 67999999999 63
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=58.30 E-value=2 Score=33.06 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 32 GFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 32 s~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
....|.||+..- ..|.+.| .|. ...|..|+.+| +..++...|-
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~-~Cg-----H~fC~~Ci~~~-~~~~~~~~CP 56 (74)
T 2yur_A 14 DELLCLICKDIM---TDAVVIP-CCG-----NSYCDECIRTA-LLESDEHTCP 56 (74)
T ss_dssp GGGSCSSSCCCC---TTCEECS-SSC-----CEECTTHHHHH-HHHSSSSCCS
T ss_pred CCCCCcCCChHH---hCCeEcC-CCC-----CHHHHHHHHHH-HHhcCCCcCC
Confidence 457899997432 3577766 144 66899999999 7655545665
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.55 E-value=5.2 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
.....|.||+..- ..|.+.|| . ..+|..|+.+| +..
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~C--g-----H~fC~~Ci~~~-~~~ 52 (85)
T 2ecv_A 17 KEEVTCPICLELL---TQPLSLDC--G-----HSFCQACLTAN-HKK 52 (85)
T ss_dssp CCCCCCTTTCSCC---SSCBCCSS--S-----CCBCTTHHHHH-HHH
T ss_pred cCCCCCCCCCccc---CCceeCCC--C-----CHHHHHHHHHH-HHH
Confidence 4567899998543 35666675 4 45799999999 654
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=56.18 E-value=3.2 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHP 76 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLk 76 (562)
.....|.||+..-. +.....| |. ...|..|+.+| ++
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~--C~-----H~fc~~Ci~~~-~~ 38 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALP--CL-----HAFCYVCITRW-IR 38 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETT--TT-----EEESTTHHHHH-HH
T ss_pred CCCCCCeeCCcccc--CCcEecC--CC-----CeeHHHHHHHH-Hh
Confidence 35678999985432 2235666 44 66899999999 64
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=55.99 E-value=3 Score=36.42 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=0.9
Q ss_pred CCCeeeEecCCCCC-------------CCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 32 GFDICRICHCEVTP-------------EASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 32 s~diCRIChcEgd~-------------e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
..+.|-||+..-.. .+.-.+....|. ...|..|+.+| ++.+ ..|-
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~W-l~~~--~~CP 104 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRW-LKTR--QVCP 104 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHH-HHcC--CcCC
Confidence 44789999743221 011122223566 77999999999 7653 3454
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=54.29 E-value=7.1 Score=29.55 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
.+...|.||+..- ..|...|| . ...|..|+.+| +..
T Consensus 10 ~~~~~C~IC~~~~---~~p~~l~C--g-----H~fC~~Ci~~~-~~~ 45 (79)
T 2egp_A 10 QEEVTCPICLELL---TEPLSLDC--G-----HSLCRACITVS-NKE 45 (79)
T ss_dssp CCCCEETTTTEEC---SSCCCCSS--S-----CCCCHHHHSCC-CCC
T ss_pred ccCCCCcCCCccc---CCeeECCC--C-----CHHHHHHHHHH-HHh
Confidence 4678899997543 35676664 4 45789999999 665
No 27
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=48.57 E-value=6.9 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=14.6
Q ss_pred eEEccccccccccCCCCccccc
Q psy16527 63 TSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 63 kyVHqsCL~rWrLksSdt~~CE 84 (562)
...|..|+.+| +..+ ..|-
T Consensus 75 H~FH~~Ci~~W-l~~~--~~CP 93 (106)
T 3dpl_R 75 HAFHFHCISRW-LKTR--QVCP 93 (106)
T ss_dssp CEEEHHHHHHH-HTTC--SBCS
T ss_pred cEECHHHHHHH-HHcC--CcCc
Confidence 88999999999 6653 3455
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.26 E-value=2.8 Score=30.81 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=25.4
Q ss_pred CCCCCeeeEecCCCCCC----CCCCccCccCCCCCCceEEccccccccccCC
Q psy16527 30 SNGFDICRICHCEVTPE----ASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 30 SSs~diCRIChcEgd~e----~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
......|-||+..-... ..+.+.|| . ...|..|+.+| +..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--g-----H~fc~~Ci~~~-~~~ 55 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTEC--G-----HVFCSQCLRDS-LKN 55 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSS--S-----CEEEHHHHHHH-HHH
T ss_pred CCCCCCCcccCccccccccccCCeEeCCC--C-----ChhcHHHHHHH-HHc
Confidence 45678899998542210 11134554 4 67899999999 653
No 29
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=41.46 E-value=7 Score=40.86 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=27.4
Q ss_pred CCCCeeeEecCCCCCCCCCC-ccCc---cCCCCCCceEEccccccccccCC
Q psy16527 31 NGFDICRICHCEVTPEASPD-VSPA---YCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pL-ISPC---~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
.+...|-||...-.+ .+.+ ...| .|. ...|..||.+| +++
T Consensus 306 e~~~ECaICys~~l~-~g~lPdk~C~n~~C~-----h~FH~~CL~kW-Lrs 349 (381)
T 3k1l_B 306 NEELRCNICFAYRLD-GGEVPLVSCDNAKCV-----LKCHAVCLEEW-FKT 349 (381)
T ss_dssp CSCCSCSSSCCSSCT-TCCCCCBCCSCTTCC-----CCBCSGGGHHH-HHH
T ss_pred cCCccCcccceeecC-CCCCccccccCCccC-----CccchHHHHHH-HHh
Confidence 356789999865433 2222 3457 477 88999999999 653
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=40.28 E-value=2.2 Score=31.78 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCCCCCCCeeeEecCCCCC----CCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 27 SLSSNGFDICRICHCEVTP----EASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 27 SlSSSs~diCRIChcEgd~----e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
++...+...|-||+..-.. .....+.| |. ...|..|+.+| ++.+ ..|-
T Consensus 4 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~--Cg-----H~fc~~Ci~~~-~~~~--~~CP 55 (71)
T 3ng2_A 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTE--CG-----HVFCSQCLRDS-LKNA--NTCP 55 (71)
T ss_dssp --CCTTCCBCTTTCCBHHHHHTTTCCEEECT--TS-----CEEEHHHHHHH-HHHC--SBCT
T ss_pred CCCCCCCCCCcccChhhhccccccCCeEeCC--CC-----ChHhHHHHHHH-HHcC--CCCC
Confidence 4455778899999753211 01114455 44 66899999999 6533 3555
No 31
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.94 E-value=9.1 Score=28.44 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=27.6
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+...|.||+..- ..|...|| . ...|..|+.+| ++ .....|-
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~C--g-----H~fC~~Ci~~~-~~-~~~~~CP 54 (66)
T 2ecy_A 13 EDKYKCEKCHLVL---CSPKQTEC--G-----HRFCESCMAAL-LS-SSSPKCT 54 (66)
T ss_dssp CCCEECTTTCCEE---SSCCCCSS--S-----CCCCHHHHHHH-HT-TSSCCCT
T ss_pred CcCCCCCCCChHh---cCeeECCC--C-----CHHHHHHHHHH-HH-hCcCCCC
Confidence 4567899997432 35666654 4 44799999999 65 2333454
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.58 E-value=6.9 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=25.2
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccC
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHP 76 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLk 76 (562)
.....|.||+..- ..|.+.|| . ...|..|+.+| ++
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~C--g-----H~fC~~Ci~~~-~~ 47 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVVTKC--R-----HYFCESCALEH-FR 47 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEECTT--S-----CEEEHHHHHHH-HH
T ss_pred CCCCCCcCCCchh---cCeeEccC--C-----CHhHHHHHHHH-HH
Confidence 3456899997543 35777775 3 55799999999 64
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=38.22 E-value=7.9 Score=29.49 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=29.2
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+...|.||+..- ..|.+.| |. ...++.|+.+| +.. +...|-
T Consensus 6 ~~~~~C~IC~~~~---~~Pv~~~--Cg-----H~fc~~Ci~~~-~~~-~~~~CP 47 (78)
T 1t1h_A 6 PEYFRCPISLELM---KDPVIVS--TG-----QTYERSSIQKW-LDA-GHKTCP 47 (78)
T ss_dssp SSSSSCTTTSCCC---SSEEEET--TT-----EEEEHHHHHHH-HTT-TCCBCT
T ss_pred cccCCCCCccccc---cCCEEcC--CC-----CeecHHHHHHH-HHH-CcCCCC
Confidence 4567899997432 3577776 54 67899999999 654 244555
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=36.52 E-value=6.6 Score=32.27 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=28.8
Q ss_pred CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
.+...|.||+..- ..|...| |. ...|..|+.+| +..+ ...|-
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~~--Cg-----H~fC~~Ci~~~-~~~~-~~~CP 54 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTLP--CN-----HTLCKPCFQST-VEKA-SLCCP 54 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEECT--TS-----CEECHHHHCCC-CCTT-TSBCT
T ss_pred CCCCCCccCCccc---CceeEcC--CC-----CHHhHHHHHHH-HhHC-cCCCC
Confidence 3457899997432 3577776 44 66899999999 6543 34565
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=36.23 E-value=6.7 Score=33.62 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.4
Q ss_pred CeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 34 DICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 34 diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
..|.||+..- ..|.+.|| . ...|..|+.+| +..+ ..|-
T Consensus 54 ~~C~iC~~~~---~~~~~~~C--g-----H~fc~~Ci~~~-~~~~--~~CP 91 (138)
T 4ayc_A 54 LQCIICSEYF---IEAVTLNC--A-----HSFCSYCINEW-MKRK--IECP 91 (138)
T ss_dssp SBCTTTCSBC---SSEEEETT--S-----CEEEHHHHHHH-TTTC--SBCT
T ss_pred CCCcccCccc---CCceECCC--C-----CCccHHHHHHH-HHcC--CcCC
Confidence 4699997532 35677774 4 67899999999 6543 3465
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.77 E-value=12 Score=30.06 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCC-Cccccc
Q psy16527 33 FDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS-DVANCA 84 (562)
Q Consensus 33 ~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS-dt~~CE 84 (562)
...|.||+..- ..|.+.|| . ...|..|+.+| +..+ +...|-
T Consensus 21 ~~~C~IC~~~~---~~p~~~~C--g-----H~fC~~Ci~~~-~~~~~~~~~CP 62 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKC--D-----HIFCKFCMLKL-LNQKKGPSQCP 62 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTT--S-----CCCCSHHHHHH-HHSSSSSCCCT
T ss_pred CCCCcccChhh---cCeEECCC--C-----CHHHHHHHHHH-HHhCCCCCCCc
Confidence 35799997532 45777774 4 55699999999 6543 334565
No 37
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.72 E-value=13 Score=35.65 Aligned_cols=42 Identities=19% Similarity=0.505 Sum_probs=28.6
Q ss_pred CCCeeeEecCCCCCCCCCCccCcc-CCCCCCceEEccccccccccCCCCccccc
Q psy16527 32 GFDICRICHCEVTPEASPDVSPAY-CFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 32 s~diCRIChcEgd~e~~pLISPC~-Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
....|-||+.-... + --|. |. ...|..|+.+| +++.+...|-
T Consensus 179 ~i~~C~iC~~iv~~-g----~~C~~C~-----~~~H~~C~~~~-~~~~~~~~CP 221 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-G----QSCETCG-----IRMHLPCVAKY-FQSNAEPRCP 221 (238)
T ss_dssp TCCBCTTTCSBCSS-C----EECSSSC-----CEECHHHHHHH-TTTCSSCBCT
T ss_pred CCCcCcchhhHHhC-C----cccCccC-----hHHHHHHHHHH-HHhCCCCCCC
Confidence 46789999865443 1 2232 66 78999999999 7665555555
No 38
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=29.82 E-value=2.6 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCCeeeEecCCCCC----CCCCCccCccCCCCCCceEEccccccccccCC
Q psy16527 32 GFDICRICHCEVTP----EASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77 (562)
Q Consensus 32 s~diCRIChcEgd~----e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks 77 (562)
+...|.||+..-.. ...+.+.| |. ...|..|+.+| ++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~--Cg-----H~fc~~Ci~~~-~~~ 43 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE--CG-----HVFCSQCLRDS-LKN 43 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET--TS-----CEEEHHHHHHH-HHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCC--CC-----CchhHHHHHHH-HHc
Confidence 45689999753221 01113445 44 66899999999 653
No 39
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=23.30 E-value=1.6e+02 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.156 Sum_probs=14.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16527 163 FTGGVVFMYIQCKAYLHICQRWKAY 187 (562)
Q Consensus 163 FtGgLVFMYIqCK~YvqLWRRWRA~ 187 (562)
++++++.+.+++-.|+.+++..|..
T Consensus 192 ~~~~~~p~~ii~~~y~~I~~~l~~~ 216 (467)
T 3uon_A 192 IAAFYLPVIIMTVLYWHISRASKSR 216 (467)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566677777765543
No 40
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.35 E-value=72 Score=26.50 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=26.4
Q ss_pred CCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEcccccccc
Q psy16527 30 SNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGS 73 (562)
Q Consensus 30 SSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rW 73 (562)
..+.++|.||...++ .++|+.==.|. +..|..||.-.
T Consensus 4 ~~~~~~C~~C~~~g~--~~~ll~C~~C~-----~~~H~~Cl~~~ 40 (111)
T 2ysm_A 4 GSSGANCAVCDSPGD--LLDQFFCTTCG-----QHYHGMCLDIA 40 (111)
T ss_dssp CCCCSCBTTTCCCCC--TTTSEECSSSC-----CEECTTTTTCC
T ss_pred CCCCCCCcCCCCCCC--CcCCeECCCCC-----CCcChHHhCCc
Confidence 357899999986654 24565333444 89999999877
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=22.08 E-value=9.8 Score=31.74 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527 33 FDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA 84 (562)
Q Consensus 33 ~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE 84 (562)
...|.||+..- ..|...|| . ...|..|+.+| +.. +...|-
T Consensus 52 ~~~C~IC~~~~---~~p~~~~C--g-----H~fC~~Ci~~~-~~~-~~~~CP 91 (124)
T 3fl2_A 52 TFQCICCQELV---FRPITTVC--Q-----HNVCKDCLDRS-FRA-QVFSCP 91 (124)
T ss_dssp HTBCTTTSSBC---SSEEECTT--S-----CEEEHHHHHHH-HHT-TCCBCT
T ss_pred CCCCCcCChHH---cCcEEeeC--C-----CcccHHHHHHH-HhH-CcCCCC
Confidence 36799997532 35676664 4 55799999999 652 333565
No 42
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.63 E-value=43 Score=27.55 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccC------CCCccccc
Q psy16527 33 FDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHP------TSDVANCA 84 (562)
Q Consensus 33 ~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLk------sSdt~~CE 84 (562)
...|.+|.......++.|+-==.|. +..|+.||.-= +. -.+.+.|-
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~-----~~yH~~Cl~Pp-l~~~~~~~p~g~W~C~ 67 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECH-----NLYHQDCHKPQ-VTDKEVNDPRLVWYCA 67 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSC-----CEEETTTSSSC-CCHHHHHCTTCCCCCH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCC-----CeEcCccCCCc-ccccccCCCCCCeeCc
Confidence 4689999865443245666533555 88899999865 43 24566776
Done!