Your job contains 1 sequence.
>psy16527
MELKPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFS
PLTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLF
HAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHI
CQRWKAYNSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAM
KSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENR
ICVQKDEKQSRLVDYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDI
TKAIDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGSP
NENVANNTNDTAAVENDRGDNAVNININPEEAKAGSSKLTELPNPDLKKKTNESQADDEG
SEDSLSGCGSPTCRLLPEPTEYNAATTSVRPKSYPFDKRQSRNSGTWTPNVEKENPTGSD
QDMGSQSPLLAQTNNSETNKTN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16527
(562 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-080204-8 - symbol:march8 "membrane-associat... 380 1.3e-38 2
MGI|MGI:1919029 - symbol:March8 "membrane-associated ring... 365 3.4e-36 2
RGD|1309339 - symbol:March8 "membrane-associated ring fin... 365 3.4e-36 2
UNIPROTKB|E1C119 - symbol:MARCH8 "Uncharacterized protein... 357 1.5e-35 2
UNIPROTKB|Q0VD59 - symbol:MARCH8 "E3 ubiquitin-protein li... 350 1.6e-35 2
UNIPROTKB|Q5T0T0 - symbol:MARCH8 "E3 ubiquitin-protein li... 359 1.7e-35 2
UNIPROTKB|H0Y7C6 - symbol:MARCH8 "E3 ubiquitin-protein li... 355 5.4e-35 2
UNIPROTKB|F1PU05 - symbol:MARCH8 "Uncharacterized protein... 354 9.4e-35 2
UNIPROTKB|F1SDU8 - symbol:MARCH8 "Uncharacterized protein... 354 9.4e-35 2
UNIPROTKB|F1NVN8 - symbol:MARCH8 "Uncharacterized protein... 350 1.1e-34 2
UNIPROTKB|Q28IK8 - symbol:march8 "E3 ubiquitin-protein li... 352 1.6e-34 2
UNIPROTKB|Q5XH39 - symbol:march8 "E3 ubiquitin-protein li... 351 2.3e-34 2
UNIPROTKB|F1PRB9 - symbol:MARCH8 "Uncharacterized protein... 349 3.9e-34 2
UNIPROTKB|F1NSN9 - symbol:MARCH1 "Uncharacterized protein... 337 1.9e-32 2
UNIPROTKB|Q8TCQ1 - symbol:MARCH1 "E3 ubiquitin-protein li... 334 2.7e-32 2
MGI|MGI:1920175 - symbol:March1 "membrane-associated ring... 333 3.5e-32 2
UNIPROTKB|E2RSA2 - symbol:MARCH1 "Uncharacterized protein... 334 4.4e-32 2
RGD|1305148 - symbol:March1 "membrane-associated ring fin... 333 9.2e-32 2
FB|FBgn0035983 - symbol:CG4080 species:7227 "Drosophila m... 362 9.6e-32 2
UNIPROTKB|F1MM17 - symbol:MARCH1 "Uncharacterized protein... 337 3.2e-30 1
UNIPROTKB|D6RGC4 - symbol:MARCH1 "E3 ubiquitin-protein li... 334 2.1e-28 2
ZFIN|ZDB-GENE-081112-1 - symbol:march1 "membrane-associat... 291 4.8e-23 1
>ZFIN|ZDB-GENE-080204-8 [details] [associations]
symbol:march8 "membrane-associated ring finger
(C3HC4) 8" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR011016 Pfam:PF12906
PROSITE:PS51292 SMART:SM00744 ZFIN:ZDB-GENE-080204-8 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 HOVERGEN:HBG081957 KO:K10656
GeneTree:ENSGT00570000078779 CTD:220972 EMBL:BX470214 EMBL:BX901979
EMBL:BX936309 IPI:IPI00488177 RefSeq:NP_001154907.1
UniGene:Dr.51279 Ensembl:ENSDART00000144813 GeneID:567818
KEGG:dre:567818 OMA:NKEALVP NextBio:20888865 Uniprot:B8A530
Length = 282
Score = 380 (138.8 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 83/188 (44%), Positives = 106/188 (56%)
Query: 4 KPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLT 63
K SP VN +P CS SS++ + DICRICHCE E SP ++P +C L
Sbjct: 49 KAGSPTSVN----AP--CSFPRSSVTPSNQDICRICHCEGDDE-SPLITPCHCT--GSLR 99
Query: 64 SIRHACSSG--SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLF 120
+ AC S T C F + KP +R WE L+MT ERRK++C+V F
Sbjct: 100 FVHQACLQQWIKSSDTRCCELCKYDFIMETKLKP---LRKWEKLQMTASERRKIMCSVTF 156
Query: 121 HAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHI 180
H +A+TCV+WSLYVLI+RT +EI GILEWPFW KL MY+QCK Y+ +
Sbjct: 157 HVIAITCVVWSLYVLIDRTAEEIKQGILEWPFWTKLVVVAIGFTGGLVFMYVQCKVYIQL 216
Query: 181 CQRWKAYN 188
+R KAYN
Sbjct: 217 WRRLKAYN 224
Score = 49 (22.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 221 VIYVQNAPE--------KPSLPSPQLAMKSPGCP 246
VIYVQN PE KPSL P L K P
Sbjct: 226 VIYVQNRPETCKIKVFDKPSLLEPNLENKEALVP 259
>MGI|MGI:1919029 [details] [associations]
symbol:March8 "membrane-associated ring finger (C3HC4) 8"
species:10090 "Mus musculus" [GO:0000209 "protein
polyubiquitination" evidence=ISO] [GO:0002495 "antigen processing
and presentation of peptide antigen via MHC class II" evidence=IDA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA]
[GO:0005764 "lysosome" evidence=ISO] [GO:0005768 "endosome"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IDA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0042289 "MHC
class II protein binding" evidence=IPI] [GO:0045347 "negative
regulation of MHC class II biosynthetic process" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR011016
Pfam:PF12906 PROSITE:PS51292 SMART:SM00744 UniPathway:UPA00143
MGI:MGI:1919029 GO:GO:0016021 GO:GO:0031901 GO:GO:0005765
GO:GO:0046872 GO:GO:0005768 GO:GO:0008270 GO:GO:0005764
GO:GO:0030659 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 eggNOG:COG5183 GO:GO:0045347 HOGENOM:HOG000113483
HOVERGEN:HBG081957 KO:K10656 GO:GO:0002495
GeneTree:ENSGT00570000078779 CTD:220972 OrthoDB:EOG41ZFB7
EMBL:AK005032 EMBL:AK154976 EMBL:BC050908 EMBL:BC053090
IPI:IPI00119602 RefSeq:NP_082196.1 UniGene:Mm.27064
ProteinModelPortal:Q9DBD2 SMR:Q9DBD2 PhosphoSite:Q9DBD2
PRIDE:Q9DBD2 Ensembl:ENSMUST00000079012 Ensembl:ENSMUST00000101032
GeneID:71779 KEGG:mmu:71779 UCSC:uc009djz.1 ChiTaRS:MARCH8
NextBio:334501 Bgee:Q9DBD2 CleanEx:MM_MARCH8 Genevestigator:Q9DBD2
Uniprot:Q9DBD2
Length = 286
Score = 365 (133.5 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 81/180 (45%), Positives = 102/180 (56%)
Query: 16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
++P S+TS SN DICRICHCE E SP ++P +C L + AC
Sbjct: 57 TAPVSAFSRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIK 112
Query: 74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
S T C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSL
Sbjct: 113 SSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 169
Query: 133 YVLIERTVDEI----YTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
YVLI+RT +EI TGILEWPFW KL MY+QCK YL + +R KAYN
Sbjct: 170 YVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAYN 229
Score = 42 (19.8 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 231 VIYVQNCPE 239
>RGD|1309339 [details] [associations]
symbol:March8 "membrane-associated ring finger (C3HC4) 8, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000209 "protein polyubiquitination" evidence=IEA;ISO]
[GO:0002495 "antigen processing and presentation of peptide antigen
via MHC class II" evidence=IEA;ISO] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA;ISO] [GO:0005764 "lysosome"
evidence=IEA;ISO] [GO:0005768 "endosome" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=ISO] [GO:0042289 "MHC class II protein
binding" evidence=IEA;ISO] [GO:0045347 "negative regulation of MHC
class II biosynthetic process" evidence=IEA;ISO] InterPro:IPR011016
Pfam:PF12906 PROSITE:PS51292 SMART:SM00744 RGD:1309339
GO:GO:0005768 GO:GO:0008270 GO:GO:0005764 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000209 EMBL:CH473964
GO:GO:0045347 KO:K10656 GO:GO:0002495 GeneTree:ENSGT00570000078779
CTD:220972 OMA:REEQNEK OrthoDB:EOG41ZFB7 IPI:IPI00365429
RefSeq:NP_001101352.1 UniGene:Rn.48069 SMR:D3ZG81
Ensembl:ENSRNOT00000017294 GeneID:312656 KEGG:rno:312656
UCSC:RGD:1309339 NextBio:665086 Uniprot:D3ZG81
Length = 286
Score = 365 (133.5 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 81/180 (45%), Positives = 102/180 (56%)
Query: 16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
++P S+TS SN DICRICHCE E SP ++P +C L + AC
Sbjct: 57 TAPVSAFSRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIK 112
Query: 74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
S T C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSL
Sbjct: 113 SSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 169
Query: 133 YVLIERTVDEI----YTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
YVLI+RT +EI TGILEWPFW KL MY+QCK YL + +R KAYN
Sbjct: 170 YVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAYN 229
Score = 42 (19.8 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 231 VIYVQNCPE 239
>UNIPROTKB|E1C119 [details] [associations]
symbol:MARCH8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00570000078779 OMA:REEQNEK EMBL:AADN02027779
IPI:IPI00589401 Ensembl:ENSGALT00000009430 Uniprot:E1C119
Length = 284
Score = 357 (130.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 79/173 (45%), Positives = 99/173 (57%)
Query: 23 SQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDV 80
S+TS SN DICRICHCE E SP ++P +C L + AC S T
Sbjct: 61 SRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCC 116
Query: 81 ANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERT 139
C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT
Sbjct: 117 ELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHIIAITCVVWSLYVLIDRT 173
Query: 140 VDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+EI TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 174 AEEIKQGQTTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 226
Score = 46 (21.3 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 19/52 (36%), Positives = 21/52 (40%)
Query: 221 VIYVQNAPE--------KPSLPSPQLAMKSP-GCPESHVVHMEHP-PHLCAA 262
VIYVQN PE KP+L P K G S + P CAA
Sbjct: 228 VIYVQNCPETSKKNIFEKPALMEPNFESKEMLGVHHSDTNSSHYTEPEDCAA 279
>UNIPROTKB|Q0VD59 [details] [associations]
symbol:MARCH8 "E3 ubiquitin-protein ligase MARCH8"
species:9913 "Bos taurus" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISS] [GO:0005768 "endosome" evidence=ISS]
[GO:0005764 "lysosome" evidence=ISS] [GO:0031901 "early endosome
membrane" evidence=IEA] [GO:0030659 "cytoplasmic vesicle membrane"
evidence=IEA] [GO:0005765 "lysosomal membrane" evidence=IEA]
[GO:0045347 "negative regulation of MHC class II biosynthetic
process" evidence=IEA] [GO:0042289 "MHC class II protein binding"
evidence=IEA] [GO:0002495 "antigen processing and presentation of
peptide antigen via MHC class II" evidence=IEA] [GO:0000209
"protein polyubiquitination" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292
SMART:SM00744 UniPathway:UPA00143 GO:GO:0016021 GO:GO:0031901
GO:GO:0005765 GO:GO:0046872 GO:GO:0005768 GO:GO:0008270
GO:GO:0005764 GO:GO:0030659 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000209 eggNOG:COG5183 GO:GO:0045347
HOGENOM:HOG000113483 HOVERGEN:HBG081957 KO:K10656 GO:GO:0002495
GeneTree:ENSGT00570000078779 EMBL:BC119819 IPI:IPI00714602
RefSeq:NP_001069700.1 UniGene:Bt.8182 ProteinModelPortal:Q0VD59
SMR:Q0VD59 STRING:Q0VD59 Ensembl:ENSBTAT00000039901 GeneID:540667
KEGG:bta:540667 CTD:220972 InParanoid:Q0VD59 OMA:REEQNEK
OrthoDB:EOG41ZFB7 NextBio:20878760 Uniprot:Q0VD59
Length = 289
Score = 350 (128.3 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 79/180 (43%), Positives = 99/180 (55%)
Query: 16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
S+P +TS SN DICRICHCE E SP ++P C L + C
Sbjct: 59 SAPVSSFPRTSVTPSNQ-DICRICHCEGDDE-SPLITPCRCT--GSLHFVHQTCLQQWIK 114
Query: 74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
S T C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSL
Sbjct: 115 SSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSL 171
Query: 133 YVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
YVLI+RT +EI TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 172 YVLIDRTAEEIRQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWRRLKAYN 231
Score = 54 (24.1 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 221 VIYVQNAPE--------KPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAP 263
VIYVQN PE KP+LP P K G V H + C P
Sbjct: 233 VIYVQNCPETSKRNIFEKPALPEPNFESKD-G---RGVCHSDTNSSCCTEP 279
>UNIPROTKB|Q5T0T0 [details] [associations]
symbol:MARCH8 "E3 ubiquitin-protein ligase MARCH8"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0002495 "antigen processing and presentation of peptide antigen
via MHC class II" evidence=IEA] [GO:0042289 "MHC class II protein
binding" evidence=IEA] [GO:0045347 "negative regulation of MHC
class II biosynthetic process" evidence=IEA] [GO:0005765 "lysosomal
membrane" evidence=IEA] [GO:0030659 "cytoplasmic vesicle membrane"
evidence=IEA] [GO:0031901 "early endosome membrane" evidence=IEA]
[GO:0005764 "lysosome" evidence=IDA] [GO:0005768 "endosome"
evidence=IDA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292
SMART:SM00744 UniPathway:UPA00143 GO:GO:0016021 GO:GO:0031901
GO:GO:0005765 GO:GO:0046872 GO:GO:0005768 GO:GO:0008270
GO:GO:0005764 GO:GO:0030659 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000209 eggNOG:COG5183 GO:GO:0045347
EMBL:AL731567 HOGENOM:HOG000113483 HOVERGEN:HBG081957 KO:K10656
GO:GO:0002495 CTD:220972 OMA:REEQNEK EMBL:AL512595 EMBL:AK313340
EMBL:BC025394 EMBL:BC066988 IPI:IPI00152297 RefSeq:NP_001002265.1
RefSeq:NP_001002266.1 RefSeq:NP_659458.2 UniGene:Hs.499489 PDB:2D8S
PDBsum:2D8S ProteinModelPortal:Q5T0T0 SMR:Q5T0T0 STRING:Q5T0T0
PhosphoSite:Q5T0T0 DMDM:74744352 PRIDE:Q5T0T0
Ensembl:ENST00000319836 Ensembl:ENST00000395769
Ensembl:ENST00000395771 Ensembl:ENST00000453980 GeneID:220972
KEGG:hsa:220972 UCSC:uc001jcg.1 GeneCards:GC10M045950
H-InvDB:HIX0008790 HGNC:HGNC:23356 HPA:HPA014597 MIM:613335
neXtProt:NX_Q5T0T0 PharmGKB:PA37370 PhylomeDB:Q5T0T0
EvolutionaryTrace:Q5T0T0 GenomeRNAi:220972 NextBio:91118
ArrayExpress:Q5T0T0 Bgee:Q5T0T0 CleanEx:HS_MARCH8
Genevestigator:Q5T0T0 Uniprot:Q5T0T0
Length = 291
Score = 359 (131.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 79/181 (43%), Positives = 103/181 (56%)
Query: 16 SSPDRCSS-QTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG-- 72
S+P SS +S++ + DICRICHCE E SP ++P +C L + AC
Sbjct: 59 SAPAPVSSFSRTSITPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI 115
Query: 73 SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWS 131
S T C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WS
Sbjct: 116 KSSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS 172
Query: 132 LYVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAY 187
LYVLI+RT +EI TGILEWPFW KL MY+QCK Y+ + +R KAY
Sbjct: 173 LYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAY 232
Query: 188 N 188
N
Sbjct: 233 N 233
Score = 43 (20.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 221 VIYVQNAPE--KPSLPSPQLAMKSPGCPESH---VVHMEHPPHLCAAP 263
VIYVQN PE K ++ + + P H + H + C P
Sbjct: 235 VIYVQNCPETSKKNI-FEKSPLTEPNFENKHGYGICHSDTNSSCCTEP 281
>UNIPROTKB|H0Y7C6 [details] [associations]
symbol:MARCH8 "E3 ubiquitin-protein ligase MARCH8"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292
SMART:SM00744 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AL731567 EMBL:AL512595 HGNC:HGNC:23356 EMBL:AL445201
Ensembl:ENST00000453424 Ensembl:ENST00000575327 Uniprot:H0Y7C6
Length = 456
Score = 355 (130.0 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 76/170 (44%), Positives = 99/170 (58%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDVANC 83
S +S++G D+CRICHCE E SP ++P +C L + AC S T C
Sbjct: 236 SPVSTSG-DVCRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCCELC 291
Query: 84 A-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDE 142
F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT +E
Sbjct: 292 KYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEE 348
Query: 143 IY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
I TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 349 IKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 398
Score = 43 (20.2 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 221 VIYVQNAPE--KPSLPSPQLAMKSPGCPESH---VVHMEHPPHLCAAP 263
VIYVQN PE K ++ + + P H + H + C P
Sbjct: 400 VIYVQNCPETSKKNI-FEKSPLTEPNFENKHGYGICHSDTNSSCCTEP 446
>UNIPROTKB|F1PU05 [details] [associations]
symbol:MARCH8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 KO:K10656
GeneTree:ENSGT00570000078779 CTD:220972 OMA:REEQNEK
EMBL:AAEX03015371 RefSeq:XP_848387.1 Ensembl:ENSCAFT00000011051
GeneID:606989 KEGG:cfa:606989 Uniprot:F1PU05
Length = 289
Score = 354 (129.7 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
Identities = 79/180 (43%), Positives = 99/180 (55%)
Query: 16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
S+P S+ S SN DICRICHCE E SP ++P C L + C
Sbjct: 59 SAPASAFSRASVTPSNQ-DICRICHCE-GDEESPLITPCRCT--GSLHFVHQTCLQQWIK 114
Query: 74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
S T C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSL
Sbjct: 115 SSDTRCCELCKYEFIMEIKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 171
Query: 133 YVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
YVLI+RT +EI TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 172 YVLIDRTTEEIKHGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYIQLWKRLKAYN 231
Score = 42 (19.8 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 233 VIYVQNCPE 241
>UNIPROTKB|F1SDU8 [details] [associations]
symbol:MARCH8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045347 "negative regulation of MHC class II
biosynthetic process" evidence=IEA] [GO:0042289 "MHC class II
protein binding" evidence=IEA] [GO:0005768 "endosome" evidence=IEA]
[GO:0005764 "lysosome" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0002495 "antigen processing and
presentation of peptide antigen via MHC class II" evidence=IEA]
[GO:0000209 "protein polyubiquitination" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR011016 Pfam:PF12906
PROSITE:PS51292 SMART:SM00744 GO:GO:0005768 GO:GO:0008270
GO:GO:0005764 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0045347 GO:GO:0002495
GeneTree:ENSGT00570000078779 EMBL:CU468425 EMBL:CT990470
Ensembl:ENSSSCT00000011387 OMA:HSCVSSL Uniprot:F1SDU8
Length = 480
Score = 354 (129.7 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
Identities = 76/170 (44%), Positives = 99/170 (58%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDVANC 83
S +S++G D CRICHCE E SP ++P +C L + AC S T C
Sbjct: 260 SPVSTSG-DACRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCCELC 315
Query: 84 A-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDE 142
F +QKP +R WE L+MT ERR+++C+V FH +A+TCV+WSLYVLI+RT +E
Sbjct: 316 KFEFIMETKQKP---LRKWEMLQMTARERRRIMCSVTFHVIAITCVVWSLYVLIDRTAEE 372
Query: 143 IY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
I TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 373 IKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 422
Score = 42 (19.8 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 424 VIYVQNCPE 432
>UNIPROTKB|F1NVN8 [details] [associations]
symbol:MARCH8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042289 "MHC class II protein binding" evidence=IEA]
[GO:0045347 "negative regulation of MHC class II biosynthetic
process" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0002495 "antigen processing and presentation of
peptide antigen via MHC class II" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005764
"lysosome" evidence=IEA] [GO:0005768 "endosome" evidence=IEA]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
GO:GO:0005768 GO:GO:0008270 GO:GO:0005764 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000209 GO:GO:0045347
GO:GO:0002495 GeneTree:ENSGT00570000078779 EMBL:AADN02027779
IPI:IPI00684702 Ensembl:ENSGALT00000033420 Uniprot:F1NVN8
Length = 455
Score = 350 (128.3 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 76/170 (44%), Positives = 98/170 (57%)
Query: 26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDVANC 83
S +S++G D CRICHCE E SP ++P +C L + AC S T C
Sbjct: 235 SPVSASG-DTCRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCCELC 290
Query: 84 A-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDE 142
F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI+RT +E
Sbjct: 291 KYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHIIAITCVVWSLYVLIDRTAEE 347
Query: 143 IY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
I TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 348 IKQGQTTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 397
Score = 46 (21.3 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 19/52 (36%), Positives = 21/52 (40%)
Query: 221 VIYVQNAPE--------KPSLPSPQLAMKSP-GCPESHVVHMEHP-PHLCAA 262
VIYVQN PE KP+L P K G S + P CAA
Sbjct: 399 VIYVQNCPETSKKNIFEKPALMEPNFESKEMLGVHHSDTNSSHYTEPEDCAA 450
>UNIPROTKB|Q28IK8 [details] [associations]
symbol:march8 "E3 ubiquitin-protein ligase MARCH8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:0005764
"lysosome" evidence=ISS] [GO:0005768 "endosome" evidence=ISS]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
UniPathway:UPA00143 GO:GO:0016021 GO:GO:0031901 GO:GO:0005765
GO:GO:0046872 GO:GO:0005768 GO:GO:0008270 GO:GO:0005764
GO:GO:0030659 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
eggNOG:COG5183 HOGENOM:HOG000113483 HOVERGEN:HBG081957 KO:K10656
GeneTree:ENSGT00570000078779 CTD:220972 EMBL:CR760341 EMBL:BC074623
RefSeq:NP_001004831.1 UniGene:Str.8463 ProteinModelPortal:Q28IK8
SMR:Q28IK8 Ensembl:ENSXETT00000056578 GeneID:448095 KEGG:xtr:448095
Xenbase:XB-GENE-944304 InParanoid:Q6GL81 Bgee:Q28IK8 Uniprot:Q28IK8
Length = 264
Score = 352 (129.0 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 79/189 (41%), Positives = 107/189 (56%)
Query: 12 NLNRS-SPDRCSSQTS----SLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIR 66
N++++ SP S+ +S S++ + DICRICHCE E SP ++P +C L +
Sbjct: 24 NISKAGSPTSVSAPSSFPRTSVTPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVH 80
Query: 67 HACSSG--SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAV 123
AC S T C F + KP +R WE L+MT ERRK++C+V FH +
Sbjct: 81 QACLQQWIKSSDTRCCELCKFEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVI 137
Query: 124 ALTCVIWSLYVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLH 179
A+TCV+WSLYVLI+RT +EI GILEWPFW KL MY+QCK Y+
Sbjct: 138 AITCVVWSLYVLIDRTAEEIKMGQNNGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQ 197
Query: 180 ICQRWKAYN 188
+ +R KAYN
Sbjct: 198 LWKRLKAYN 206
Score = 42 (19.8 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 208 VIYVQNCPE 216
>UNIPROTKB|Q5XH39 [details] [associations]
symbol:march8 "E3 ubiquitin-protein ligase MARCH8"
species:8355 "Xenopus laevis" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISS] [GO:0005764 "lysosome" evidence=ISS]
[GO:0005768 "endosome" evidence=ISS] InterPro:IPR011016
Pfam:PF12906 PROSITE:PS51292 SMART:SM00744 UniPathway:UPA00143
GO:GO:0016021 GO:GO:0031901 GO:GO:0005765 GO:GO:0046872
GO:GO:0005768 GO:GO:0008270 GO:GO:0005764 GO:GO:0030659
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
HOVERGEN:HBG081957 KO:K10656 CTD:220972 EMBL:BC084236
RefSeq:NP_001088241.1 UniGene:Xl.50492 ProteinModelPortal:Q5XH39
SMR:Q5XH39 GeneID:495072 KEGG:xla:495072 Xenbase:XB-GENE-944310
Uniprot:Q5XH39
Length = 264
Score = 351 (128.6 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 82/192 (42%), Positives = 104/192 (54%)
Query: 4 KPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLT 63
K SP V S+P R + + SS DICRICHCE E SP ++P +C L
Sbjct: 27 KAGSPTSV----SAPSRFPRTSVTPSSQ--DICRICHCEGDDE-SPLITPCHCT--GSLH 77
Query: 64 SIRHACSSG--SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLF 120
+ AC S T C F + KP +R WE L+MT ERRK++C+V F
Sbjct: 78 FVHQACLQQWIKSSDTRCCELCKFEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTF 134
Query: 121 HAVALTCVIWSLYVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKA 176
H +A+TCV+WSLYVLI+RT +EI GILEWPFW KL MY+QCK
Sbjct: 135 HVIAITCVVWSLYVLIDRTAEEIRMGQNNGILEWPFWTKLVVVAIGFTGGLLFMYVQCKV 194
Query: 177 YLHICQRWKAYN 188
Y+ + +R KAYN
Sbjct: 195 YVQLWKRLKAYN 206
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 208 VIYVQNCPE 216
>UNIPROTKB|F1PRB9 [details] [associations]
symbol:MARCH8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045347 "negative regulation of MHC class II
biosynthetic process" evidence=IEA] [GO:0042289 "MHC class II
protein binding" evidence=IEA] [GO:0005768 "endosome" evidence=IEA]
[GO:0005764 "lysosome" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0002495 "antigen processing and
presentation of peptide antigen via MHC class II" evidence=IEA]
[GO:0000209 "protein polyubiquitination" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR011016 Pfam:PF12906
PROSITE:PS51292 SMART:SM00744 GO:GO:0005768 GO:GO:0008270
GO:GO:0005764 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0045347 GO:GO:0002495
GeneTree:ENSGT00570000078779 EMBL:AAEX03015371
Ensembl:ENSCAFT00000039005 Uniprot:F1PRB9
Length = 467
Score = 349 (127.9 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 77/180 (42%), Positives = 98/180 (54%)
Query: 16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
S P S +S++G D CRICHCE E SP ++P C L + C
Sbjct: 237 SPPSEKCPPVSPVSTSG-DACRICHCE-GDEESPLITPCRCT--GSLHFVHQTCLQQWIK 292
Query: 74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
S T C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSL
Sbjct: 293 SSDTRCCELCKYEFIMEIKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 349
Query: 133 YVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
YVLI+RT +EI TGILEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 350 YVLIDRTTEEIKHGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYIQLWKRLKAYN 409
Score = 42 (19.8 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 221 VIYVQNAPE 229
VIYVQN PE
Sbjct: 411 VIYVQNCPE 419
>UNIPROTKB|F1NSN9 [details] [associations]
symbol:MARCH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000209 "protein polyubiquitination" evidence=IEA] [GO:0002495
"antigen processing and presentation of peptide antigen via MHC
class II" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005765 "lysosomal membrane"
evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006955 "immune response" evidence=IEA] [GO:0031901 "early
endosome membrane" evidence=IEA] [GO:0031902 "late endosome
membrane" evidence=IEA] [GO:0032588 "trans-Golgi network membrane"
evidence=IEA] [GO:0042287 "MHC protein binding" evidence=IEA]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
GO:GO:0005886 GO:GO:0031901 GO:GO:0006955 GO:GO:0031902
GO:GO:0005765 GO:GO:0032588 GO:GO:0005789 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000209
OMA:KXVLEWP GO:GO:0002495 GeneTree:ENSGT00570000078779
EMBL:AADN02016439 EMBL:AADN02016440 EMBL:AADN02016441
EMBL:AADN02016442 EMBL:AADN02016443 IPI:IPI00680196
Ensembl:ENSGALT00000032278 Uniprot:F1NSN9
Length = 235
Score = 337 (123.7 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 76/176 (43%), Positives = 96/176 (54%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S+ S S DICRICHCE E SP ++P C L + AC S T
Sbjct: 10 RSQSRLSVCPSTQ-DICRICHCEGDDE-SPLITPCRCT--GTLRFVHQACLHQWIKSSDT 65
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
C F + KP +R WE L+MT ERRK++C+V FH +A+TCV+WSLYVLI
Sbjct: 66 RCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIVCSVTFHVIAITCVVWSLYVLI 122
Query: 137 ERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+RT +EI G+LEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 123 DRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYN 178
Score = 40 (19.1 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 221 VIYVQNAPEKPSLPSPQLAMKSPGCPES 248
VI+VQN P+ + +L K+ C +S
Sbjct: 180 VIFVQNCPDT----AKKLEEKNSSCTQS 203
>UNIPROTKB|Q8TCQ1 [details] [associations]
symbol:MARCH1 "E3 ubiquitin-protein ligase MARCH1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0030659
"cytoplasmic vesicle membrane" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005764
"lysosome" evidence=IDA] [GO:0005768 "endosome" evidence=IDA]
[GO:0032588 "trans-Golgi network membrane" evidence=ISS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=ISS]
[GO:0005765 "lysosomal membrane" evidence=ISS] [GO:0006955 "immune
response" evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] [GO:0031901 "early endosome membrane" evidence=IDA]
[GO:0031902 "late endosome membrane" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0002495 "antigen processing and
presentation of peptide antigen via MHC class II" evidence=IDA]
[GO:0042287 "MHC protein binding" evidence=IDA] InterPro:IPR011016
Pfam:PF12906 PROSITE:PS51292 SMART:SM00744 UniPathway:UPA00143
GO:GO:0016021 GO:GO:0005886 GO:GO:0005794 GO:GO:0031901
GO:GO:0006955 GO:GO:0031902 GO:GO:0005765 GO:GO:0032588
GO:GO:0005789 GO:GO:0046872 GO:GO:0008270 GO:GO:0030659
EMBL:CH471056 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0042287 eggNOG:COG5183 EMBL:AK000675
EMBL:AL713759 IPI:IPI00016724 IPI:IPI00382922 RefSeq:NP_001159845.1
RefSeq:NP_060393.1 UniGene:Hs.592804 UniGene:Hs.608487
ProteinModelPortal:Q8TCQ1 SMR:Q8TCQ1 STRING:Q8TCQ1
PhosphoSite:Q8TCQ1 DMDM:74762613 PaxDb:Q8TCQ1 PRIDE:Q8TCQ1
DNASU:55016 Ensembl:ENST00000274056 Ensembl:ENST00000339875
Ensembl:ENST00000503008 GeneID:55016 KEGG:hsa:55016 UCSC:uc003iqr.2
UCSC:uc003iqs.2 CTD:55016 GeneCards:GC04M164448 HGNC:HGNC:26077
HPA:HPA014600 MIM:613331 neXtProt:NX_Q8TCQ1 PharmGKB:PA134986392
HOGENOM:HOG000113483 HOVERGEN:HBG081957 InParanoid:Q8TCQ1 KO:K10656
OMA:KXVLEWP PhylomeDB:Q8TCQ1 GenomeRNAi:55016 NextBio:58385
ArrayExpress:Q8TCQ1 Bgee:Q8TCQ1 CleanEx:HS_MARCH1
Genevestigator:Q8TCQ1 GO:GO:0002495 Uniprot:Q8TCQ1
Length = 289
Score = 334 (122.6 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 75/176 (42%), Positives = 95/176 (53%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S+ S S DICRICHCE E SP ++P C L + +C S T
Sbjct: 65 RSQSRLSVCPSTQ-DICRICHCE-GDEESPLITPCRCT--GTLRFVHQSCLHQWIKSSDT 120
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
C F + KP +R WE L+MT ERRK+ C+V FH +A+TCV+WSLYVLI
Sbjct: 121 RCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLI 177
Query: 137 ERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+RT +EI G+LEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 178 DRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYN 233
Score = 42 (19.8 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 13 LNRSSPDRCSSQTSSLS 29
LN SP R +S++S++S
Sbjct: 37 LNEKSPGRSASRSSNIS 53
>MGI|MGI:1920175 [details] [associations]
symbol:March1 "membrane-associated ring finger (C3HC4) 1"
species:10090 "Mus musculus" [GO:0000209 "protein
polyubiquitination" evidence=ISO;IDA] [GO:0002495 "antigen
processing and presentation of peptide antigen via MHC class II"
evidence=ISO;IMP] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISO;IDA] [GO:0005764 "lysosome" evidence=ISO] [GO:0005765
"lysosomal membrane" evidence=IDA] [GO:0005768 "endosome"
evidence=ISO] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0006955 "immune
response" evidence=ISO;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031901 "early endosome membrane" evidence=ISO;IDA] [GO:0031902
"late endosome membrane" evidence=ISO;IDA] [GO:0032588 "trans-Golgi
network membrane" evidence=IDA] [GO:0042287 "MHC protein binding"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
UniPathway:UPA00143 MGI:MGI:1920175 GO:GO:0016021 GO:GO:0005886
GO:GO:0005794 GO:GO:0031901 GO:GO:0006955 GO:GO:0031902
GO:GO:0005765 GO:GO:0032588 GO:GO:0005789 GO:GO:0046872
GO:GO:0008270 GO:GO:0030659 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000209 GO:GO:0042287 eggNOG:COG5183 CTD:55016
HOGENOM:HOG000113483 HOVERGEN:HBG081957 KO:K10656 OMA:KXVLEWP
GO:GO:0002495 EMBL:AK036489 EMBL:AK089040 EMBL:AK137337
EMBL:AK152592 EMBL:AK163081 EMBL:BC066008 IPI:IPI00421198
IPI:IPI00467707 IPI:IPI00652150 IPI:IPI00751349 IPI:IPI00756223
RefSeq:NP_001159844.1 RefSeq:NP_001159847.1 RefSeq:NP_780397.2
UniGene:Mm.380457 ProteinModelPortal:Q6NZQ8 SMR:Q6NZQ8
STRING:Q6NZQ8 PhosphoSite:Q6NZQ8 PRIDE:Q6NZQ8
Ensembl:ENSMUST00000039540 Ensembl:ENSMUST00000072482
Ensembl:ENSMUST00000098708 Ensembl:ENSMUST00000110253
Ensembl:ENSMUST00000110255 Ensembl:ENSMUST00000110258
Ensembl:ENSMUST00000110259 Ensembl:ENSMUST00000178982 GeneID:72925
KEGG:mmu:72925 UCSC:uc009lvj.2 UCSC:uc009lvk.2 UCSC:uc009lvl.2
UCSC:uc009lvm.2 UCSC:uc009lvn.2 GeneTree:ENSGT00570000078779
ChiTaRS:MARCH1 NextBio:337147 Bgee:Q6NZQ8 CleanEx:MM_MARCH1
Genevestigator:Q6NZQ8 Uniprot:Q6NZQ8
Length = 289
Score = 333 (122.3 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
Identities = 75/176 (42%), Positives = 95/176 (53%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S+ S S DICRICHCE E SP ++P C L + +C S T
Sbjct: 65 RSQSRLSVCPSTQ-DICRICHCE-GDEESPLITPCRCT--GTLRFVHQSCLHQWIKSSDT 120
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
C F + KP +R WE L+MT ERRK+ C+V FH +A+TCV+WSLYVLI
Sbjct: 121 RCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIFCSVTFHVIAVTCVVWSLYVLI 177
Query: 137 ERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+RT +EI G+LEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 178 DRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYN 233
Score = 42 (19.8 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 13 LNRSSPDRCSSQTSSLS 29
LN SP R +S++S++S
Sbjct: 37 LNEKSPGRSASRSSNIS 53
>UNIPROTKB|E2RSA2 [details] [associations]
symbol:MARCH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292 SMART:SM00744
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 OMA:KXVLEWP
GeneTree:ENSGT00570000078779 EMBL:AAEX03010104 EMBL:AAEX03010105
EMBL:AAEX03010106 EMBL:AAEX03010107 Ensembl:ENSCAFT00000013987
Uniprot:E2RSA2
Length = 299
Score = 334 (122.6 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 75/176 (42%), Positives = 95/176 (53%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S+ S S DICRICHCE E SP ++P C L + +C S T
Sbjct: 65 RSQSRLSVCPSTQ-DICRICHCE-GDEESPLITPCRCT--GTLRFVHQSCLHQWIKSSDT 120
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
C F + KP +R WE L+MT ERRK+ C+V FH +A+TCV+WSLYVLI
Sbjct: 121 RCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLI 177
Query: 137 ERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+RT +EI G+LEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 178 DRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYN 233
Score = 40 (19.1 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 13 LNRSSPDRCSSQTSSLS 29
LN SP R +S++S++S
Sbjct: 37 LNDKSPGRSASRSSNIS 53
>RGD|1305148 [details] [associations]
symbol:March1 "membrane-associated ring finger (C3HC4) 1, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000209 "protein polyubiquitination" evidence=IEA;ISO]
[GO:0002495 "antigen processing and presentation of peptide antigen
via MHC class II" evidence=IEA;ISO] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA;ISO] [GO:0005764 "lysosome"
evidence=ISO] [GO:0005765 "lysosomal membrane" evidence=IEA;ISO]
[GO:0005768 "endosome" evidence=ISO] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0006955 "immune response" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0031901 "early
endosome membrane" evidence=IEA;ISO] [GO:0031902 "late endosome
membrane" evidence=IEA;ISO] [GO:0032588 "trans-Golgi network
membrane" evidence=IEA;ISO] [GO:0042287 "MHC protein binding"
evidence=IEA;ISO] InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292
SMART:SM00744 RGD:1305148 GO:GO:0005886 GO:GO:0031901 GO:GO:0006955
GO:GO:0031902 GO:GO:0005765 GO:GO:0032588 GO:GO:0005789
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 CTD:55016 KO:K10656 OMA:KXVLEWP GO:GO:0002495
GeneTree:ENSGT00570000078779 OrthoDB:EOG43N7CF IPI:IPI00364638
RefSeq:NP_001129310.1 UniGene:Rn.225169 Ensembl:ENSRNOT00000032289
GeneID:361135 KEGG:rno:361135 UCSC:RGD:1305148 NextBio:675326
Uniprot:D4A6K8
Length = 285
Score = 333 (122.3 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 75/176 (42%), Positives = 95/176 (53%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S+ S S DICRICHCE E SP ++P C L + +C S T
Sbjct: 61 RSQSRLSVCPSTQ-DICRICHCE-GDEESPLITPCRCT--GTLRFVHQSCLHQWIKSSDT 116
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
C F + KP +R WE L+MT ERRK+ C+V FH +A+TCV+WSLYVLI
Sbjct: 117 RCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIFCSVTFHVIAVTCVVWSLYVLI 173
Query: 137 ERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+RT +EI G+LEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 174 DRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYN 229
Score = 38 (18.4 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 14 NRSSPDRCSSQTSSLS 29
N SP R +S++S++S
Sbjct: 34 NEKSPGRSASRSSNIS 49
>FB|FBgn0035983 [details] [associations]
symbol:CG4080 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0035220 "wing disc
development" evidence=IGI] [GO:0022416 "chaeta development"
evidence=IGI] InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292
SMART:SM00744 EMBL:AE014296 GO:GO:0008270 GO:GO:0022416
GO:GO:0035220 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5183
KO:K10656 GeneTree:ENSGT00570000078779 EMBL:AY089531
RefSeq:NP_001246695.1 RefSeq:NP_648305.1 UniGene:Dm.4962 SMR:Q9VSX7
IntAct:Q9VSX7 MINT:MINT-813998 EnsemblMetazoa:FBtr0076494
EnsemblMetazoa:FBtr0309506 GeneID:39079 KEGG:dme:Dmel_CG4080
UCSC:CG4080-RA FlyBase:FBgn0035983 InParanoid:Q9VSX7 OMA:ANIECSQ
OrthoDB:EOG4MW6NQ GenomeRNAi:39079 NextBio:811810 Uniprot:Q9VSX7
Length = 617
Score = 362 (132.5 bits), Expect = 9.6e-32, Sum P(2) = 9.6e-32
Identities = 74/172 (43%), Positives = 96/172 (55%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S +S S N DICRICHCE P+ +P ++P YC L + AC ++ T
Sbjct: 27 RFGSGSSQASQNSGDICRICHCESDPQ-NPLLTPCYCS--GSLKYVHQACLQQWLTASET 83
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
+ C F + KP W L+++G+ERR+L +VLFH A CVIWSL VLI
Sbjct: 84 NSCELCKFPFIMHTKIKP---FNEWRSLDISGIERRRLCYSVLFHCAAALCVIWSLCVLI 140
Query: 137 ERTVDEIYTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
ER D++ G+++WPFW KL MYIQCKAYLH+C RWKA N
Sbjct: 141 ERAADDVQRGLIDWPFWTKLAVVTVGLTGGIVFMYIQCKAYLHLCHRWKARN 192
Score = 43 (20.2 bits), Expect = 9.6e-32, Sum P(2) = 9.6e-32
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 221 VIYVQNAPEK--P-SLPSPQLA 239
++ +QNAPEK P + PSP A
Sbjct: 194 ILLIQNAPEKIHPVAPPSPVAA 215
>UNIPROTKB|F1MM17 [details] [associations]
symbol:MARCH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042287 "MHC protein binding" evidence=IEA] [GO:0032588
"trans-Golgi network membrane" evidence=IEA] [GO:0031902 "late
endosome membrane" evidence=IEA] [GO:0031901 "early endosome
membrane" evidence=IEA] [GO:0006955 "immune response" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] [GO:0005765
"lysosomal membrane" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0002495 "antigen processing and
presentation of peptide antigen via MHC class II" evidence=IEA]
[GO:0000209 "protein polyubiquitination" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR011016 Pfam:PF12906
PROSITE:PS51292 SMART:SM00744 GO:GO:0005886 GO:GO:0031901
GO:GO:0006955 GO:GO:0031902 GO:GO:0005765 GO:GO:0032588
GO:GO:0005789 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000209 CTD:55016 KO:K10656 OMA:KXVLEWP
GO:GO:0002495 GeneTree:ENSGT00570000078779 EMBL:DAAA02015203
EMBL:DAAA02015204 EMBL:DAAA02015205 EMBL:DAAA02015206
EMBL:DAAA02015207 IPI:IPI00689943 RefSeq:NP_001180078.1
UniGene:Bt.87492 Ensembl:ENSBTAT00000061084 GeneID:617247
KEGG:bta:617247 NextBio:20900556 Uniprot:F1MM17
Length = 272
Score = 337 (123.7 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 76/176 (43%), Positives = 95/176 (53%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPT 77
R S+ S S DICRICHCE E SP ++P C L + AC S T
Sbjct: 48 RSQSRLSVCPSTQ-DICRICHCE-GDEESPLITPCRCT--GTLRFVHQACLHQWIKSSDT 103
Query: 78 SDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
C F + KP +R WE L+MT ERRK+ C+V FH +A+TCV+WSLYVLI
Sbjct: 104 RCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLI 160
Query: 137 ERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
+RT +EI G+LEWPFW KL MY+QCK Y+ + +R KAYN
Sbjct: 161 DRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYN 216
>UNIPROTKB|D6RGC4 [details] [associations]
symbol:MARCH1 "E3 ubiquitin-protein ligase MARCH1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR011016 Pfam:PF12906 PROSITE:PS51292
SMART:SM00744 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
HGNC:HGNC:26077 EMBL:AC079232 EMBL:AC079240 EMBL:AC092631
EMBL:AC093788 EMBL:AC098867 EMBL:AC105250 EMBL:AC108154
EMBL:AC112247 IPI:IPI00965590 ProteinModelPortal:D6RGC4 SMR:D6RGC4
Ensembl:ENST00000514618 HOGENOM:HOG000170114 OrthoDB:EOG43N7CF
ArrayExpress:D6RGC4 Bgee:D6RGC4 Uniprot:D6RGC4
Length = 545
Score = 334 (122.6 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 73/183 (39%), Positives = 98/183 (53%)
Query: 13 LNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG 72
L ++P + T S+ ++CRICHCE E SP ++P C L + +C
Sbjct: 313 LQVNNPVQKPPATYDDGSDNLEVCRICHCE-GDEESPLITPCRCT--GTLRFVHQSCLHQ 369
Query: 73 --SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVI 129
S T C F + KP +R WE L+MT ERRK+ C+V FH +A+TCV+
Sbjct: 370 WIKSSDTRCCELCKYDFIMETKLKP---LRKWEKLQMTTSERRKIFCSVTFHVIAITCVV 426
Query: 130 WSLYVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWK 185
WSLYVLI+RT +EI G+LEWPFW KL MY+QCK Y+ + +R K
Sbjct: 427 WSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLK 486
Query: 186 AYN 188
AYN
Sbjct: 487 AYN 489
Score = 42 (19.8 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 13 LNRSSPDRCSSQTSSLS 29
LN SP R +S++S++S
Sbjct: 37 LNEKSPGRSASRSSNIS 53
>ZFIN|ZDB-GENE-081112-1 [details] [associations]
symbol:march1 "membrane-associated ring finger
(C3HC4) 1" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR011016 Pfam:PF12906
PROSITE:PS51292 SMART:SM00744 ZFIN:ZDB-GENE-081112-1 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00570000078779
EMBL:BX323590 IPI:IPI00994673 Ensembl:ENSDART00000054581
Uniprot:F1Q546
Length = 503
Score = 291 (107.5 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 70/203 (34%), Positives = 98/203 (48%)
Query: 2 ELKPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSP 61
+L SP K + S + + + + ++CRICHCE E P ++P +C
Sbjct: 257 DLSVPSPYKCTV---SSNHNGAMQPPCTDDELEVCRICHCEGDEEC-PLITPCHCT--GS 310
Query: 62 LTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLS-VRSWEHLEMTGMERRKLLCAVLF 120
L + C +SD C + +L +R WE L M+ ERRK+ C+V+F
Sbjct: 311 LRFVHQGCLH-QWIKSSDTRCCELCKYDFIMETHLKPLRKWEKLHMSTSERRKIFCSVIF 369
Query: 121 HAVALTCVIWSLYVLIERTVDEIY---------------TGILEWPFWIKLXXXXXXXXX 165
H A+ CVIWSLYVLI+RT +EI G+L+WPFW KL
Sbjct: 370 HLAAVVCVIWSLYVLIDRTAEEIRHSKNKALVRLSPLNAVGVLDWPFWTKLIVVAVGFTG 429
Query: 166 XXXXMYIQCKAYLHICQRWKAYN 188
MYIQCK YL + +R KA+N
Sbjct: 430 GLIFMYIQCKVYLQLWRRLKAFN 452
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 562 532 0.00092 119 3 11 23 0.47 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 628 (67 KB)
Total size of DFA: 351 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.20u 0.12s 56.32t Elapsed: 00:00:05
Total cpu time: 56.20u 0.12s 56.32t Elapsed: 00:00:05
Start: Thu Aug 15 14:42:10 2013 End: Thu Aug 15 14:42:15 2013