RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16527
(562 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.1 bits (184), Expect = 3e-14
Identities = 77/437 (17%), Positives = 128/437 (29%), Gaps = 162/437 (37%)
Query: 20 RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSD 79
R + + + G +I P +PD Y L SI +C P
Sbjct: 200 RTTLDAEKVFTQGLNILEWLE---NPSNTPDKD--Y------LLSIPISC------PLIG 242
Query: 80 VANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERT 139
V A + + + L T E R L H+ ++ ++ + +
Sbjct: 243 VIQLAHYVVTAKL-----------LGFTPGELRSYLKGATGHSQG---LVTAVAIAETDS 288
Query: 140 VDEIYTG---ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAY--------- 187
+ + + F+I GV C AY
Sbjct: 289 WESFFVSVRKAITVLFFI-----------GVR------------CYE--AYPNTSLPPSI 323
Query: 188 ------NSEGGPG-M---SNLRP------IRRSLTHPLGLFAPTPKVSGVIYVQNAPEK- 230
N+EG P M SNL + ++ +H +V I + N +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH----LPAGKQVE--ISLVNGAKNL 377
Query: 231 -----P-SLPSPQLA---MKSP-GCPESHVVHME----------------HPPHLCAAPA 264
P SL L K+P G +S + E H L PA
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL--VPA 435
Query: 265 PSYVDPSWDEDMMSNTKSIDLKGVRNLHI----FFNEENRICVQKDEKQSRLVDYLETGE 320
+ ++D++ N S + K ++ I F+ + + V R+VD +
Sbjct: 436 SDLI----NKDLVKNNVSFNAK---DIQIPVYDTFDGSD-LRVLSGSISERIVDCI-IRL 486
Query: 321 PSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRT--------FEEV 372
P ETTT + HI ++ GP + T +
Sbjct: 487 PVKWETTTQFKAT--------------HI-LD---FGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 373 TQAELDARPYRNTNEDY 389
LD P ++DY
Sbjct: 529 VAGTLDINP----DDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 75/254 (29%)
Query: 266 SYVD--PSWDEDMMSNTKSIDLKGVRNL--HIFFNEE-NRICVQKDEKQS--RLVDYLET 318
Y D +++ + + D K V+++ I EE + I + KD RL L
Sbjct: 17 QYKDILSVFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL- 72
Query: 319 GEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEVTQAELD 378
S E + N + + + S + +R + D
Sbjct: 73 ---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-------D 122
Query: 379 ARPYRNTNEDYKVTCNNDDSESPVLNL-----QIKKAEIVIKFG--GS------------ 419
+ + Y V+ P L L +++ A+ V+ G GS
Sbjct: 123 NQVFA----KYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 420 -------PNE----NVANNTNDTAAVEN-------------DRGDNAVNININPEEAKAG 455
+ N+ N + +E R D++ NI + +A
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 456 SSKLTELPNPDLKK 469
+L L + +
Sbjct: 234 LRRL--LKSKPYEN 245
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.6 bits (74), Expect = 0.046
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 22 SSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYC 56
S +S++ + DICRICHCE E SP ++P +C
Sbjct: 4 GSSGTSITPSSQDICRICHCEGDDE-SPLITPCHC 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 32.1 bits (74), Expect = 0.52
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 110 ERRKLLCAVLFHAVALTCVIWSLYV--LIERTVDEIYTGILEWPFWIKLIVVVIGFTGGV 167
L+ +F I + LI +T+D ++ ++++ +
Sbjct: 35 HTFTLIMVFVF---VTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTS 91
Query: 168 VFMYIQCKAYLHICQR 183
+ ++Q K L + Q
Sbjct: 92 LLFWLQGKIMLTLSQD 107
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 31.9 bits (73), Expect = 0.59
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 11/60 (18%)
Query: 300 RICVQK---DEKQSRLVDY---LETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEK 353
R+ V D+ RLV + G +P V +I + +I K
Sbjct: 820 RVIVLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKE-----YAEIGK 874
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 31.3 bits (71), Expect = 1.1
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 300 RICVQK---DEKQSRLVD---YLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEK 353
+ VQ+ D + L+ G+PS+ T VI ++ HI K
Sbjct: 799 LLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDA-----HIARMK 853
Query: 354 TSA 356
T A
Sbjct: 854 TEA 856
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 19/42 (45%)
Query: 201 IRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKS 242
+++ L L L+A +A P LA+K+
Sbjct: 22 LKK-LQASLKLYAD----------DSA--------PALAIKA 44
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural
genomics, PSI-biology, NEW YORK consortium on MEM
protein structure, nycomps; HET: LDA; 2.30A {Idiomarina
loihiensis}
Length = 249
Score = 30.4 bits (68), Expect = 1.2
Identities = 7/63 (11%), Positives = 26/63 (41%)
Query: 111 RRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFM 170
RR ++ +L + + + LY ++ ++ + + ++ W++ I+ + +
Sbjct: 30 RRYVVVPILTNLILFSLAFTWLYGEVDYWLNRFMSWLPDFFQWLEFILWPLAVITIIALF 89
Query: 171 YIQ 173
Sbjct: 90 SFI 92
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 119 LFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFT 164
L + S+ V++ ++ L + + LI+V+I
Sbjct: 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVII-LW 53
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 29.8 bits (68), Expect = 2.6
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 138 RTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFM 170
+ + Y G L WI LI V + G++ +
Sbjct: 201 SYIRQAYLGGLNLLEWIFLIAVALITIFGIILV 233
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 27.0 bits (60), Expect = 3.0
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 34 DICRICHCEVTPEASPDVSPAYC 56
+C IC+ E + C
Sbjct: 7 PVCWICNEE---LGNERFRACGC 26
>2po1_B Probable exosome complex exonuclease 2; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Length = 277
Score = 28.1 bits (63), Expect = 6.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 268 VDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENRIC-VQKDEKQS 310
VDPS DE+++ + K + I +E I VQK E +
Sbjct: 210 VDPSLDEELVMDGK---------ITITTDETGHISAVQKSEGGA 244
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 28.3 bits (64), Expect = 6.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 349 IQIEKTS----AGPDITKAIDNRTFEEVTQAEL 377
I +++TS GPD+ K + T EEVT EL
Sbjct: 206 IMVDQTSQMFITGPDVIKTV---TGEEVTMEEL 235
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL
biogenesis/degradation, glycosidase; 2.05A {Thermotoga
maritima}
Length = 448
Score = 28.2 bits (63), Expect = 7.9
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 18/105 (17%)
Query: 364 IDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVL------NLQIKKAEIVIKFG 417
++N F + + R Y N + PV+ NL+ + ++
Sbjct: 338 MENIFFIDNVAVNVSEEVIRIN-LRY---DNEEGEYLPVVRSVFVKNLKATGGKYAVRIE 393
Query: 418 GSPN--------ENVANNTNDTAAVENDRGDNAVNININPEEAKA 454
G N + + + N+ +N +
Sbjct: 394 GLENDYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEK 438
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 7.9
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 35/89 (39%)
Query: 297 EEN--RICVQKDEKQSRLVDYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHI----Q 350
EE R+ + D + E E ++ + + W+ Q
Sbjct: 92 EEQRKRL-QELDAASKVMEQ--EWRE-----------KAKKDLEE-------WNQRQSEQ 130
Query: 351 IEKTSAGPDITKAIDNRTFEEVTQAELDA 379
+EK +NR ++ + DA
Sbjct: 131 VEKNKI--------NNRIADKAFYQQPDA 151
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A
{Anabaena SP} PDB: 2o3b_A*
Length = 259
Score = 28.1 bits (62), Expect = 8.3
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 65 IRHACSSGSSHPTSDVANCASFSSS--CRQKPNLSVRSWEHLEMTGME 110
R + + + N A+F + Q P+ + +W +LE E
Sbjct: 106 ARGHIAPSADRTKTTEDNAATFLMTNMMPQTPDNNRNTWGNLEDYCRE 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.393
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,376,907
Number of extensions: 493793
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 18
Length of query: 562
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 463
Effective length of database: 3,937,614
Effective search space: 1823115282
Effective search space used: 1823115282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)