RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16527
         (562 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 32.1 bits (72), Expect = 0.21
 Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 99  RSWEHLEMTGMERR----KLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWI 154
           ++WE +   G+ +       +   +  A     ++      I + ++E +     W  WI
Sbjct: 427 KAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETH-----WTVWI 481

Query: 155 KLIVVVIGFTGGVVFMYIQCKAYLH 179
               ++  F      +++  +   H
Sbjct: 482 TRFYIIGLFLFLTFLVFLAERRRNH 506


>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
           subtilis [TaxId: 1423]}
          Length = 178

 Score = 28.1 bits (62), Expect = 1.8
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 136 IERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQR--------WKAY 187
           I R +  I   ++E    +   ++V   T G+       +    I              Y
Sbjct: 11  IRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLY 70

Query: 188 NSEGGPGMSNLRPIRRSLTHPLGL 211
             +     SN  P+ +    P+ +
Sbjct: 71  RDDLSKKTSNDEPLVKGADIPVDI 94


>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 161

 Score = 26.0 bits (56), Expect = 9.7
 Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 9/66 (13%)

Query: 240 MKSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEEN 299
           +K     E  +        +     P+        +++   +S          ++   EN
Sbjct: 97  LKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSR---------VWDEAEN 147

Query: 300 RICVQK 305
           R    K
Sbjct: 148 RKHTIK 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.393 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,099,378
Number of extensions: 99435
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 4
Length of query: 562
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 472
Effective length of database: 1,171,896
Effective search space: 553134912
Effective search space used: 553134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.5 bits)