BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16528
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 12 NMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGR 71
N+P PS + R+V +TG TGF+G+ LV +LLR + L+R + +D R
Sbjct: 65 NLPGPSPEL------RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRR 118
Query: 72 LAEIINA 78
L + ++
Sbjct: 119 LEKTFDS 125
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLL 47
QN+SVF+ G +G GKVL++++L
Sbjct: 23 QNKSVFILGASGETGKVLLKEIL 45
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 23 FYQNRSVFVTGGTGFMGKVL 42
F+Q + VFVTG TGF G L
Sbjct: 6 FWQGKRVFVTGHTGFKGSWL 25
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNI 56
N+++ +TGGTG GK V K+L + K I
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKII 51
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
Quinone Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQ 66
+ +TG TG +G ++E L+++ P + + ++ P Q
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ 39
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLL 47
QN+SVF+ G +G G+VL++++L
Sbjct: 17 QNKSVFILGASGETGRVLLKEIL 39
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDIN 69
V VTGGTGF+G +++ LL + + N + P+ +D++
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSV-NTTIRADPERKRDVS 43
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 29 VFVTGGTGFMGKVLVEKLL 47
V VTGG GF+G +VE LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLL 21
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDIN 69
N +V V GG GF+G LV++LL G+ ++++ + IN
Sbjct: 32 NTNVMVVGGAGFVGSNLVKRLLEL--GVNQVHVVDNLLSAEKIN 73
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 21 SEFYQNRSVFVTGGTGFMG 39
+ F+Q + VFVTG TGF G
Sbjct: 4 NSFWQGKRVFVTGHTGFKG 22
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLL 47
Q+ +V VTG +GF+G LV +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 29 VFVTGGTGFMGKVLVEKLL 47
+ VTGG GF+G LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLV 21
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 29 VFVTGGTGFMGKVLVEKLL 47
+ VTGG GF+G LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLV 21
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 29 VFVTGGTGFMGKVLVEKL 46
+ VTGGTGF+G+ +VE +
Sbjct: 5 IAVTGGTGFLGQYVVESI 22
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 27 RSVFVTGGTGFMGKVLVEKLL 47
R + +TGG GF+G LV ++
Sbjct: 2 RKILITGGAGFIGSALVRYII 22
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 27 RSVFVTGGTGFMGKVLVEKLL 47
+ + +TGG GF+G L +KL+
Sbjct: 6 KRILITGGAGFVGSHLTDKLM 26
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL 59
S+ VTG TG +G ++++ LL+ P + I ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIV 33
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 26.6 bits (57), Expect = 3.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL 59
S+ VTG TG +G ++++ LL+ P + I ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIV 33
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYL 58
+N+++ +TGG GF+G L + P K + L
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVL 42
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
Length = 313
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 29 VFVTGGTGFMGKVLVEKLLRS 49
+ VTGG GF+G +V+KL S
Sbjct: 4 IVVTGGAGFIGSHVVDKLSES 24
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG 65
R + VTGG GF+G +V+ L + GI +I ++ K G
Sbjct: 47 RMIIVTGGAGFIGSNIVKAL--NDKGITDILVVDNLKDG 83
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 23 FYQNRSVFVTGGTGFMGKVL 42
++Q+ + VTGG+G +GK +
Sbjct: 4 YFQSMRILVTGGSGLVGKAI 23
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 23 FYQNRSVFVTGGTGFMGKVL 42
++Q+ + VTGG+G +GK +
Sbjct: 3 YFQSMRILVTGGSGLVGKAI 22
>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
Length = 364
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
G GF+GK L+RS PG+ ++ R
Sbjct: 14 GYGFVGKTFHAPLIRSVPGLNLAFVASR 41
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 7 PTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKV 41
PT+ + A P + ++ VFV G TGF+G+V
Sbjct: 34 PTVKAAPEAVQNPENPKNKDPFVFVHGFTGFVGEV 68
>pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
Structures
Length = 88
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 15 APSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL 59
AP+ P+SE N +F+T ++++ L PG K + L+
Sbjct: 2 APAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 46
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGI 53
Q +++ VTGG GF+G V + + P +
Sbjct: 3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDV 31
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
+V VTGGTG +G + L+ G++N+ L+ R
Sbjct: 532 TVLVTGGTGALGAEVARHLVIE-RGVRNLVLVSR 564
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 27 RSVFVTGGTGFMGKVLVEKL 46
+ + +TGG GF+G L +KL
Sbjct: 28 KRILITGGAGFVGSHLTDKL 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,610,032
Number of Sequences: 62578
Number of extensions: 93614
Number of successful extensions: 278
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 33
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)