RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16528
(82 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 67.6 bits (165), Expect = 3e-15
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 10 SSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDIN 69
+ + + R+V +TG TGF+G+ LV +LLR + L+R + +D
Sbjct: 57 ADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR 116
Query: 70 GRLAEIINAPL 80
RL + ++
Sbjct: 117 RRLEKTFDSGD 127
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 40.0 bits (94), Expect = 1e-05
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 17 STPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
P+S + V G TG +G +
Sbjct: 4 EQPLSRPGAHVKYAVLGATGLLGHHAARAIRA 35
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 38.3 bits (89), Expect = 6e-05
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
QN+SVF+ G +G G+VL++++L + L+ R
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 37.9 bits (88), Expect = 8e-05
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 21 SEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
+ F+Q + VFVTG TGF G L L
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 37.6 bits (88), Expect = 1e-04
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 16 PSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD 67
N+++ +TGGTG GK V K+L + K I + R + Q
Sbjct: 11 SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQS 61
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 36.2 bits (84), Expect = 3e-04
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQD 67
+ V + G TG G+ L++++L P + + R +
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEH 45
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 36.1 bits (83), Expect = 3e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDI 68
+ V + GGTG++GK +V + Y+L RP+ +I
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNI 43
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 35.2 bits (81), Expect = 6e-04
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINA 78
+V VTG +G G+++ +KL L+R G++ G A++
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQGKEKIGGEADVFIG 55
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHG 65
+ + G TG++G+ + + L +LL+R
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTA 40
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 35.0 bits (81), Expect = 0.001
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCP 51
+ VTG G +G+V+ E+L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE 28
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 34.9 bits (80), Expect = 0.001
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
+ + G TG +G+ +V +++ Y L+R E+I+
Sbjct: 4 KILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDNYQSL 55
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 35.0 bits (81), Expect = 0.001
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 27 RSVFVTGGTGFMGKVLVEKLLRSC 50
+ VTG G +G + L
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLA 26
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 35.0 bits (80), Expect = 0.001
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 10 SSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP 62
S +P+P V + G TGF+G+ + L + + Y+L RP
Sbjct: 3 VSPVPSPKG---------RVLIAGATGFIGQFVATASLDAH---RPTYILARP 43
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 34.6 bits (79), Expect = 0.001
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ + G TG G ++E+
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 13 MPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLL 47
M + + V GGTGF+ +LV+ LL
Sbjct: 1 MATQHPIGKK-----TACVVGGTGFVASLLVKLLL 30
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 34.7 bits (79), Expect = 0.001
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLR--SCPGIKNIYLLMR 61
+ + G TG +G L E L + G +Y + R
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR 38
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 11 SNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLL 47
+ + P + V VTG GF+ +VE+LL
Sbjct: 1 AKIDNAVLP-----EGSLVLVTGANGFVASHVVEQLL 32
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 29 VFVTGGTGFMGKVLVEKLL 47
V VTGGTGF+G +++ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLL 22
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 34.2 bits (79), Expect = 0.002
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 1 MNNNNVPTISSNMPAPSTPVSEFYQNRS-VFVTGGTGFMGKVLVEKLLR 48
M N + + + +TG GF+ + +L
Sbjct: 3 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKH 51
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 33.8 bits (77), Expect = 0.002
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ V G TG G +V + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 33.8 bits (78), Expect = 0.002
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+F+ G TG +GK L++ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 33.9 bits (78), Expect = 0.002
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ + G +GF+G L+ + L
Sbjct: 7 IVLIGASGFVGSALLNEALN 26
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 33.8 bits (78), Expect = 0.003
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 2 NNNNVPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
++++ + P + N +V V GG GF+G LV++LL
Sbjct: 8 HHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLE 54
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 33.8 bits (78), Expect = 0.003
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLL 47
Q+ +V VTG +GF+G LV +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 33.5 bits (77), Expect = 0.003
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
V V G G + + L+ +L
Sbjct: 24 VLVVGANGKVARYLLSELKN 43
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 33.5 bits (77), Expect = 0.003
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 29 VFVTGGTGFMGKVLVEKLLRS 49
V +TG G +G+ L +L
Sbjct: 150 VAITGSRGLVGRALTAQLQTG 170
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 33.0 bits (75), Expect = 0.004
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP 62
+ + GGTG++G +V+ L+ Y+ RP
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLG---HPTYVFTRP 44
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 33.1 bits (75), Expect = 0.004
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ + G G + + L LL
Sbjct: 8 ITILGAAGQIAQXLTATLLT 27
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 33.1 bits (76), Expect = 0.005
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 21 SEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
+ ++Q + + G G +G+ L ++L++
Sbjct: 9 NLYFQGMHIAIIGAAGMVGRKLTQRLVK 36
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 32.6 bits (75), Expect = 0.006
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
S+ VTG TG +G ++++ LL+ P + I ++ + + + E+ D+
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEV--RHGDY 54
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 32.6 bits (75), Expect = 0.007
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYL 58
N + + G G +G L +KL + G +N+
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLY-GTENVIA 33
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 32.2 bits (74), Expect = 0.007
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
Q + +TG GF+G L+E LL+
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLK 49
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 32.1 bits (73), Expect = 0.009
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 15 APSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
T + + V + G GF+G L +++L
Sbjct: 13 EAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILE 46
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 32.2 bits (73), Expect = 0.009
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 27 RSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRP 62
+ + GGTG++GK +V L ++ RP
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARP 37
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 31.9 bits (73), Expect = 0.011
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR-PKHGQDINGRLAEIINAPLDW 82
++ +TG TG +G + + + + I + ++ +R + D + LD+
Sbjct: 2 NIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRGKVSV--RQLDY 53
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 31.8 bits (73), Expect = 0.012
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
++ +TG GF+G L+EKLL+
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLK 47
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.5 bits (72), Expect = 0.015
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ + G TG G + + ++
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ 25
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 31.5 bits (72), Expect = 0.015
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 14 PAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL 59
P T + R + VTGG GF+G +V+ L GI +I ++
Sbjct: 34 PDLGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDK--GITDILVV 77
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 31.1 bits (71), Expect = 0.018
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ VTG +G +G LV L
Sbjct: 2 ILVTGSSGQIGTELVPYLAE 21
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.1 bits (71), Expect = 0.024
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
+N+++ +TGG GF+G L
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQE 32
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 30.9 bits (70), Expect = 0.025
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR-PKHGQDINGRLAEIINA 78
V + G G + + ++ +L IK L R P ++II
Sbjct: 26 VLILGAGGQIARHVINQLADK-QTIK-QTLFARQPAKIHKPYPTNSQIIMG 74
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 30.7 bits (70), Expect = 0.030
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 VTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKHGQDINGRLAEIINAPLDW 82
+TG TG +G ++E L+++ P + + ++ P Q + + + D+
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITV--RQADY 53
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 30.8 bits (70), Expect = 0.031
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
V + G GF+G L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.6 bits (69), Expect = 0.032
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 6 VPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
P + + ++S +TGG G G L + L G + + L R
Sbjct: 1864 APRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLR--GAQKLVLTSR 1917
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 30.6 bits (70), Expect = 0.035
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ VTGG GF+G LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVE 22
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 29.8 bits (68), Expect = 0.056
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ VTGG GF+G +V+KL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE 23
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 30.1 bits (68), Expect = 0.056
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 10 SSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
SS + + +TGG GF+G L +KL+
Sbjct: 11 SSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMM 49
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.9 bits (68), Expect = 0.064
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNI 56
+ VTGG GF+G +V+ L GI +I
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK--GITDI 27
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 29.8 bits (68), Expect = 0.064
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLR 48
+ +TGG GF+G L L+
Sbjct: 7 KHRILITGGAGFIGGHLARALVA 29
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.8 bits (67), Expect = 0.075
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 14 PAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
A + + + + +V +TGG G +G+ L +L G + + L R
Sbjct: 247 RAAAAGAASWQPSGTVLITGGMGAIGRRLARRLAAE--GAERLVLTSR 292
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 29.4 bits (67), Expect = 0.077
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ VTGGTGF+G+ +VE +
Sbjct: 5 IAVTGGTGFLGQYVVESIKN 24
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.7 bits (67), Expect = 0.078
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 14 PAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
PA T + + +V VTG +L R G ++ L
Sbjct: 239 PAHGTASPWWQADGTVLVTGAEEPAAAEAARRLARD--GAGHLLLHTT 284
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.5 bits (67), Expect = 0.081
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
VF+TG G +G + E LL
Sbjct: 24 VFITGICGQIGSHIAELLLE 43
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.1 bits (65), Expect = 0.10
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 29 VFVTGGTGFMGKVLVEKLL 47
+ +TG GF+GK L L
Sbjct: 3 IVITGAKGFVGKNLKADLT 21
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 29.0 bits (66), Expect = 0.11
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
V VTGG GF+G +VE LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLA 22
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 28.7 bits (65), Expect = 0.16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 SVFVTGGTGFMGKVLVEKLLR 48
+ +TGG G +G L+E L
Sbjct: 22 RILITGGAGCLGSNLIEHWLP 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.17
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 60 MRPKHGQDINGRLAE-IINAPLDW 82
+R I+ R+ + II P+ W
Sbjct: 468 LR-VLSGSISERIVDCIIRLPVKW 490
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 28.3 bits (63), Expect = 0.23
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRS 49
Q +++ V G TG G L+
Sbjct: 4 QKKTIAVVGATGRQGASLIRVAAAV 28
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 28.1 bits (63), Expect = 0.25
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 14 PAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
AP+T + +V VTGGTG +G + L R G ++ L+ R
Sbjct: 215 AAPATDDE-WKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSR 259
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 28.1 bits (63), Expect = 0.28
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 14 PAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
PA + SV VTGGTG +G + +L G ++ L R
Sbjct: 227 PAVPGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQ--GAAHLVLTSR 272
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.1 bits (62), Expect = 0.29
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 1 MNNNNVPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRS 49
M + + V + GTG GK L K+L+
Sbjct: 1 MEKTCADEFPLTVDSSEKQ-------GVVCI-FGTGDFGKSLGLKMLQC 41
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 27.7 bits (62), Expect = 0.29
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRS 49
+ V V GGTG G + LL
Sbjct: 4 DKKLVVVFGGTGAQGGSVARTLLED 28
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 27.3 bits (61), Expect = 0.51
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 17 STPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRS 49
S P + V + G GF+G L E+LLR
Sbjct: 306 SQPACTARRRTRVLILGVNGFIGNHLTERLLRE 338
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 27.0 bits (60), Expect = 0.68
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 18 TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMR 61
T + +V VTGGTG +G + L+ G++N+ L+ R
Sbjct: 522 TMPPVWDAAGTVLVTGGTGALGAEVARHLVIER-GVRNLVLVSR 564
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 26.8 bits (60), Expect = 0.71
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 16 PSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLL-----------RSCPGIKNIYL 58
+ + + +TG GF+GK L L + + N+ +
Sbjct: 2 RGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEM 55
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 26.7 bits (60), Expect = 0.86
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIK 54
Q +++ VTGG GF+G V + + P +
Sbjct: 3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVH 32
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 26.5 bits (59), Expect = 0.94
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLR 48
++++ V GG+G +G +V+
Sbjct: 22 SKNILVLGGSGALGAEVVKFFKS 44
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases,
structural genomics, joint CENT structural genomics,
JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Length = 145
Score = 26.4 bits (58), Expect = 0.96
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPK 63
V +++ + G L+ ++L + + L
Sbjct: 81 VQAGWRSLGL---------GSELMRRVLTELGDLYMVDLSCDDD 115
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 26.3 bits (59), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIK 54
+ VTGG GF+G V +L+S K
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETYK 52
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 26.1 bits (58), Expect = 1.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
+ R V V GG G +G V+
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRA 29
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A*
1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 26.1 bits (58), Expect = 1.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNI 56
N++V G +G +L++ +KN
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKR--NLKNF 33
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 26.0 bits (57), Expect = 1.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
+ + V GTG +G L
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAG 141
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 25.9 bits (58), Expect = 1.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLRSCPGIK 54
+ + VTGG GF+G + +L P +
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWE 31
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 25.9 bits (57), Expect = 1.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 34 GTGFMGKVLVEKLLRSCPGIK 54
G GF G VL+ +R P +
Sbjct: 9 GLGFAGSVLMAPAMRHHPDAQ 29
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 25.6 bits (57), Expect = 1.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 29 VFVTGGTGFMGKVLVEKLLRSCPGIKNI 56
+ +TGG GF+G L L +
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVF 31
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease
P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1,
yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Length = 140
Score = 25.4 bits (55), Expect = 2.0
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 15 APSTPVSEFYQNRSVFVTGGTGFMGKVL-VEKLLRSCPGIKNIYLLMR 61
++ + ++FV T ++ + + K L S + Y+ +
Sbjct: 19 PSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVL 66
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 25.5 bits (57), Expect = 2.1
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 28 SVFVTGGTGFMG 39
++ VTGG G++G
Sbjct: 7 TILVTGGAGYIG 18
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 25.5 bits (57), Expect = 2.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 28 SVFVTGGTGFMG 39
V VTGG+G++G
Sbjct: 2 RVLVTGGSGYIG 13
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 2.1
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 28/69 (40%)
Query: 32 TGGTGFMGK--VL---VEKLLRSCPGIK---------NIYLLMRPKHGQ---------DI 68
T GTG M ++ +EK+ G++ N+ L+ P+ + D+
Sbjct: 673 TRGTGLMSANNIIAEGIEKM-----GVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADL 727
Query: 69 NGRLAEIIN 77
NG L +
Sbjct: 728 NGGLQFVPE 736
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 25.5 bits (56), Expect = 2.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 40 KVLVEKLLRSCPGIKNIYLLM 60
+ +V L+ PG+ ++ LM
Sbjct: 135 RKIVSALISVIPGMLSVIALM 155
>2awp_A Iron super-oxide dismutase; structural genomics, structural
genomics consortium, SGC, oxidoreductase; 2.00A
{Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A
Length = 198
Score = 25.2 bits (56), Expect = 2.3
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKN---------IY-LLMRPKHGQDINGRLAEIINA 78
T F K LVE + S I N Y M P G + +G + E I
Sbjct: 45 DTPFATKSLVEIMKESTGAIFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQE 99
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 25.3 bits (56), Expect = 2.4
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 4 NNVPTISSNMPAPSTPVSE--FYQNRSVFVTGGTGFMGKVLVEKLLR 48
N S + +Q + F+TGG +GK + L
Sbjct: 2 NTEALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSS 48
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 25.0 bits (55), Expect = 2.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 25 QNRSVFVTGGTGFMGKVLVEKLLR 48
+ V V GG G +G ++E +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKK 25
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 25.2 bits (56), Expect = 2.8
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 24/75 (32%)
Query: 29 VFVTGGT------------GFMGKVLVEKLLRSCPGIKNIYLL------------MRPKH 64
+ TGGT G V V+KLL + P I ++ + M K
Sbjct: 8 ILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEMTGKV 67
Query: 65 GQDINGRLAEIINAP 79
+ R+ E++
Sbjct: 68 WLKLAKRVNELLAQK 82
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 25.2 bits (56), Expect = 2.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 26 NRSVFVTGGTGFMG 39
V VTGG G++G
Sbjct: 2 AEKVLVTGGAGYIG 15
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 25.2 bits (56), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 13 MPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
M A S+P + F +R V +TGG +G+ +L
Sbjct: 1 MTATSSPTTRF-TDRVVLITGGGSGLGRATAVRLAA 35
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 25.1 bits (55), Expect = 2.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 26 NRSVFVTGGTGFMG 39
++ V VTGG G++G
Sbjct: 11 SKIVLVTGGAGYIG 24
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 24.7 bits (54), Expect = 3.0
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKNIYL 58
G G G+ +E+ G++ +Y
Sbjct: 102 GRGL-GRQALERFAAGLDGVRRLYA 125
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 25.0 bits (55), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 34 GTGFMGKVLVEKLLRSCPGIK 54
G GF+GK L+RS PG+
Sbjct: 14 GYGFVGKTFHAPLIRSVPGLN 34
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 24.8 bits (53), Expect = 3.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 31 VTGGTGFMGKVLVEKLLRS 49
+ GGTG +GK L +L
Sbjct: 5 LLGGTGNLGKGLALRLATL 23
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 24.8 bits (55), Expect = 3.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 26 NRSVFVTGGTGFMGKVLVEKLLR 48
NR V VTGG +GK + L
Sbjct: 2 NRGVIVTGGGHGIGKQICLDFLE 24
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 24.9 bits (55), Expect = 3.2
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 31 VTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH---GQDINGRLA 73
V G G MG+ L+ + R ++ +L+R +D L
Sbjct: 26 VVGANGRMGRELITAIQRR-KDVELCAVLVRKGSSFVDKDA-SILI 69
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 24.5 bits (54), Expect = 4.2
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 7 PTISSNMPAPSTPVSEF-YQNRSVFVTGGTGFMGKVLVEKLLR 48
+PA +++ F+TGG +G + E +R
Sbjct: 7 VEGDDCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMR 49
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 24.6 bits (54), Expect = 4.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 40 KVLVEKLLRSCPGIKNIYLLM 60
K ++E +L S + + LL+
Sbjct: 120 KQIIEAILESVRRVFFVSLLL 140
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 24.7 bits (55), Expect = 4.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 28 SVFVTGGTGFMGKVLVEKLLRS 49
S+ + GG G++G V+KL+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDE 24
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 24.7 bits (54), Expect = 4.5
Identities = 6/40 (15%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 20 VSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCPGIKNIYLL 59
+ V GG G +G+ + +++ + P + ++++
Sbjct: 29 LQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVV 66
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 24.5 bits (54), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 28 SVFVTGGTGFMGKVLVEKLLR 48
V V GG G++G V LLR
Sbjct: 4 RVLVCGGAGYIGSHFVRALLR 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae}
PDB: 2ks6_A
Length = 224
Score = 24.4 bits (52), Expect = 4.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 10 SSNMPAPSTPVSEFYQNRSVFVTGGT 35
S +P S + + +++FVT G
Sbjct: 12 SGLVPRGSHMLEGIIEEKALFVTCGA 37
>3gvc_A Oxidoreductase, probable short-chain type
dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG,
SBRI, structural genomics; 2.45A {Mycobacterium
tuberculosis}
Length = 277
Score = 24.4 bits (54), Expect = 4.8
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 2 NNNNVPTISSNMPAPSTPVSEFYQNRSVFVTGGTGFMGKVLVEKLLR 48
+++++ T+ + P + + VTG +G + +L
Sbjct: 5 HHHHMGTLEAQTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLAD 51
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 24.5 bits (54), Expect = 4.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 31 VTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH---GQDINGRLAEIINAPL 80
+ G +G MG++L+E +L + P + L R GQD L + L
Sbjct: 12 IAGASGRMGRMLIEAVLAA-PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL 63
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod,
oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1
d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Length = 192
Score = 24.4 bits (54), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKN----IY------LLMRPKHGQDINGRLAEIINA 78
GT F GK L E + S G+ N ++ + P G + G++AE I A
Sbjct: 44 GTAFEGKSLEEIIRSSEGGVFNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAA 98
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 24.5 bits (54), Expect = 5.0
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 28/77 (36%)
Query: 29 VFVTGGT------------GFMGKVLVEKLLRSCPGIKNIYLL------------MRPKH 64
+ TGGT +GKV VE L+ + P +K+I + M
Sbjct: 6 ILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNV 65
Query: 65 GQDINGRLAEIINAPLD 81
LA+ IN D
Sbjct: 66 WL----TLAKKINTDCD 78
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 24.2 bits (53), Expect = 5.4
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 34 GTGFMGKVLVEKLLRSCPGIK 54
G G G V LL +
Sbjct: 12 GYGLSGSVFHGPLLDVLDEYQ 32
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 24.0 bits (53), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ VTGG GF+G V +LL
Sbjct: 3 LLVTGGAGFIGSHFVRQLLA 22
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella
burnetii}
Length = 210
Score = 24.1 bits (53), Expect = 6.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKN----IY------LLMRPKHGQDINGRLAEIINA 78
GT F + L E + +S GI N + M P G D +G LA I+
Sbjct: 45 GTPFEKEPLEEIIRKSDGGIFNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDK 99
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 24.0 bits (51), Expect = 6.6
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 34 GTGFMGKVLVEKLLRS 49
G+GF+ + +++ L +
Sbjct: 30 GSGFVAQPVIDTLAAN 45
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 24.1 bits (51), Expect = 6.7
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 34 GTGFMGKVLVEKLLRS 49
G+GF+ + ++ L S
Sbjct: 10 GSGFVTRPTLDVLTDS 25
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal
stability, psychrophilic protein, metal-binding,
oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas
haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Length = 192
Score = 24.0 bits (53), Expect = 7.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKN----IY------LLMRPKHGQDINGRLAEIINA 78
GT F K L E + S G+ N I+ + P G G +A+ INA
Sbjct: 44 GTKFENKSLEEIVCSSDGGVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINA 98
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 24.1 bits (53), Expect = 7.3
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 31 VTGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKH---GQDINGRLA 73
+ G G MG+ L++ L G++ L R G D G LA
Sbjct: 10 IAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSLLGSDA-GELA 53
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A
{Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1
Length = 197
Score = 23.6 bits (52), Expect = 7.5
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 34 GTGFMGKVLVEKLLRSCPGIKN---------IY-LLMRPKHGQDINGRLAEIINA 78
GT F GK L E + S GI N Y + P G G LA+ INA
Sbjct: 44 GTEFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINA 98
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 24.0 bits (53), Expect = 7.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 29 VFVTGGTGFMGKVLVEKLLR 48
+ +TGG GF+G +V +++
Sbjct: 3 ILITGGAGFIGSAVVRHIIK 22
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural
genomics consortium, SGC, transport protein; 1.60A
{Cryptosporidium parvum} SCOP: d.17.4.2
Length = 129
Score = 23.7 bits (51), Expect = 8.4
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 18 TPVSEFYQNRSVFVTGGTGFMGKVLVEKLLRSCP 51
+ Y +S+ T F G+ + S
Sbjct: 31 PALGGLYGPQSMLTWEDTQFQGQANIVNKFNSLN 64
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION
pump, carboxyltransferase, lyase; 2.20A
{Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 23.9 bits (52), Expect = 8.8
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 1 MNNNNVPTISSNMPAPSTPVSE-FYQNR 27
M ++P NMP P+ + N
Sbjct: 1 MGFYSMPRYFQNMPQVGKPLKKADAANE 28
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 23.6 bits (51), Expect = 9.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 29 VFVTGGTGFMGKVLVEKLL 47
V V GG G+ G L
Sbjct: 14 VMVIGGDGYCGWATALHLS 32
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP:
b.169.1.1 b.169.1.1
Length = 345
Score = 23.7 bits (50), Expect = 9.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 50 CPGIKNIYLLMRPKHGQDINGR 71
G +N+Y+ + K G+ I+GR
Sbjct: 26 VKGQQNMYVALWYKFGKPIHGR 47
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB:
2wt4_A
Length = 332
Score = 23.7 bits (52), Expect = 10.0
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 28/77 (36%)
Query: 29 VFVTGGT------------GFMGKVLVEKLLRSCPGIKNIYLL------------MRPKH 64
+ TGGT G++ V++LL++ P + I + M +
Sbjct: 10 LLATGGTIAGSGVDASLGSYKSGELGVKELLKAIPSLNKIARIQGEQVSNIGSQDMNEEI 69
Query: 65 GQDINGRLAEIINAPLD 81
+LA+ LD
Sbjct: 70 WF----KLAQRAQELLD 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.415
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,272,153
Number of extensions: 63815
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 117
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)