BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16529
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9D|B Chain B, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-24) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 13-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9D|D Chain D, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-24) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 13-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
Length = 54
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 29/41 (70%)
Query: 54 KSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94
K E L S +E FD KLK TET EKNPLP+KE I+ EK+A
Sbjct: 11 KVAENLKSQLEGFDKSKLKKTETQEKNPLPSKETIEQEKQA 51
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 14 VEAFDTAKLKHAETQEKNPLPDKD 37
+E FD +KLK ETQEKNPLP K+
Sbjct: 20 LEGFDKSKLKKTETQEKNPLPSKE 43
>pdb|3SJH|B Chain B, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp- Latrunculin A
pdb|3U8X|B Chain B, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U8X|D Chain D, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
Length = 54
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 54 KSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94
K E L S +E F+ KLK TET EKNPLP+KE I+ EK+A
Sbjct: 11 KVAENLKSQLEGFNQDKLKKTETQEKNPLPSKETIEQEKQA 51
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 14 VEAFDTAKLKHAETQEKNPLPDKD 37
+E F+ KLK ETQEKNPLP K+
Sbjct: 20 LEGFNQDKLKKTETQEKNPLPSKE 43
>pdb|1HJ0|A Chain A, Thymosin Beta9
Length = 41
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 60 ISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94
+ I +FD KLK TET EKN LPTKE I+ EK+A
Sbjct: 6 LGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQA 40
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 14 VEAFDTAKLKHAETQEKNPLPDKD 37
+ +FD AKLK ETQEKN LP K+
Sbjct: 9 INSFDKAKLKKTETQEKNTLPTKE 32
>pdb|3M3N|W Chain W, Structure Of A Longitudinal Actin Dimer Assembled By
Tandem W Domains
Length = 101
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 70 KLKHTETVEKNPLPTKEAIDLEKKA 94
+LK TET EKNPLP+KE I+ EK+A
Sbjct: 74 QLKKTETQEKNPLPSKETIEQEKQA 98
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 21 KLKHAETQEKNPLPDKD 37
+LK ETQEKNPLP K+
Sbjct: 74 QLKKTETQEKNPLPSKE 90
>pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl
Segment
Length = 297
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 69 GKLKHTETVEKNPLPTKEAIDLEKKA 94
+L+ TET EKNPLP+KE I+ EK+A
Sbjct: 269 ARLRKTETQEKNPLPSKETIEQEKQA 294
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 20 AKLKHAETQEKNPLPDKDGTKKK 42
A+L+ ETQEKNPLP K+ +++
Sbjct: 269 ARLRKTETQEKNPLPSKETIEQE 291
>pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 147
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 71 LKHTETVEKNPLPTKEAIDLEKK 93
KH ET EKNPLP+KE I+ EK+
Sbjct: 125 FKHVETQEKNPLPSKETIEQEKQ 147
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 19 TAKLKHAETQEKNPLPDKD 37
+ KH ETQEKNPLP K+
Sbjct: 122 ASGFKHVETQEKNPLPSKE 140
>pdb|3U9Z|C Chain C, Crystal Structure Between Actin And A Protein Construct
Containing The First Beta-Thymosin Domain Of Drosophila
Ciboulot (Residues 2-58) With The Three Mutations
N26dQ27KD28S
Length = 58
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 54 KSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEK 92
K E L S +E FD KLK+ T EK LPT E + EK
Sbjct: 13 KVAENLKSQLEGFDKSKLKNASTQEKIILPTAEDVAAEK 51
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 14 VEAFDTAKLKHAETQEKNPLP 34
+E FD +KLK+A TQEK LP
Sbjct: 22 LEGFDKSKLKNASTQEKIILP 42
>pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
Length = 168
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 35 DKDGTKKKPISKCTSYEDKKSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKK 93
D G + +S+ED+K+ K+ + I N G++ E PLP + + L ++
Sbjct: 10 DVSGKIASSVESWSSFEDRKNFRKITTEIGNVVMGRITFEEI--GRPLPERLNVVLTRR 66
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium And Cyanocobalamin (Vitamin B12)
Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 YEDKKSKEKLISGIENFDTGKLKHT 74
Y + K++ K + NFDTG L HT
Sbjct: 454 YNEGKARIKGVEATANFDTGPLTHT 478
>pdb|1NQF|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
Methionine Substiution Construct For Se-Met Sad Phasing
Length = 594
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 YEDKKSKEKLISGIENFDTGKLKHT 74
Y + K++ K + NFDTG L HT
Sbjct: 454 YNEGKARIKGVEATANFDTGPLTHT 478
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 YEDKKSKEKLISGIENFDTGKLKHT 74
Y + K++ K + NFDTG L HT
Sbjct: 454 YNEGKARIKGVEATANFDTGPLTHT 478
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 YEDKKSKEKLISGIENFDTGKLKHT 74
Y + K++ K + NFDTG L HT
Sbjct: 454 YNEGKARIKGVEATANFDTGPLTHT 478
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 YEDKKSKEKLISGIENFDTGKLKHT 74
Y + K++ K + NFDTG L HT
Sbjct: 454 YNEGKARIKGVEATANFDTGPLTHT 478
>pdb|2GSK|A Chain A, Structure Of The Btub:tonb Complex
Length = 590
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 50 YEDKKSKEKLISGIENFDTGKLKHT 74
Y + K++ K + NFDTG L HT
Sbjct: 450 YNEGKARIKGVEATANFDTGPLTHT 474
>pdb|2FF6|H Chain H, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
Length = 26
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 26 ETQEKNPLPDKDGTKKKPISK 46
ET EKNPLPDK+G ++ + +
Sbjct: 1 ETNEKNPLPDKEGEGEESVHR 21
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 30 KNPLPDKDGTKKKPISKCTSYEDKKSKEKLISGIENFDTGKLKHTETVEKNPLPTKEA 87
K LPD T++ + C SY++ KS ++ + ++ + V K LP ++
Sbjct: 255 KAALPDATETQQGWVVPCASYQNSKSTISIVMQKSGSSSDTIEISVPVSKMLLPVDQS 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.302 0.124 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,938,670
Number of Sequences: 62578
Number of extensions: 111953
Number of successful extensions: 169
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 36
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 45 (21.9 bits)