Query psy16529
Match_columns 94
No_of_seqs 148 out of 189
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 23:36:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4794|consensus 99.8 1.1E-21 2.5E-26 139.4 2.2 71 10-94 40-110 (114)
2 smart00152 THY Thymosin beta a 99.7 4.2E-19 9.2E-24 105.5 2.2 35 60-94 1-35 (37)
3 smart00152 THY Thymosin beta a 99.7 3.6E-18 7.8E-23 101.5 1.1 36 11-57 1-36 (37)
4 PF01290 Thymosin: Thymosin be 99.7 7.3E-18 1.6E-22 101.7 -1.1 40 7-57 2-41 (41)
5 PF01290 Thymosin: Thymosin be 99.6 1.6E-17 3.4E-22 100.2 -3.0 38 57-94 3-40 (41)
6 KOG4794|consensus 99.3 4.1E-13 8.9E-18 95.8 0.7 41 6-57 71-111 (114)
7 PF02205 WH2: WH2 motif; Inte 77.9 0.42 9.2E-06 26.7 -0.9 23 7-29 5-28 (30)
8 PF15022 DUF4522: Protein of u 28.5 41 0.00089 24.4 1.7 36 58-93 45-80 (117)
9 PF05920 Homeobox_KN: Homeobox 23.4 47 0.001 19.2 1.0 12 79-90 7-18 (40)
10 PRK07122 RNA polymerase sigma 8.8 2.2E+02 0.0047 21.8 1.5 24 46-70 66-89 (264)
No 1
>KOG4794|consensus
Probab=99.83 E-value=1.1e-21 Score=139.43 Aligned_cols=71 Identities=48% Similarity=0.640 Sum_probs=66.2
Q ss_pred HhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHHHhhhhccccCCCCCcccccccCCCCCCHHHHH
Q psy16529 10 LIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAID 89 (94)
Q Consensus 10 ~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie 89 (94)
.+.+++.||..+|.++.|+++++||++++ |.++|. .+++|.+||.++||||||+|||+|||+|+|+
T Consensus 40 R~~~~~~~~~~~~~~t~t~~k~~~~d~k~-----------I~~~kp---~~~~~~k~~~sklKkTet~EKN~Lpsketie 105 (114)
T KOG4794|consen 40 RIHEIEHFDSTKLHSTPTKEKIVLPDAKD-----------IMQDKP---DLQEIEKFDNSKLKKTETQEKNVLPSKETIE 105 (114)
T ss_pred ccCcccccCccccccccccccccCCChhh-----------HhhcCC---chHHHHHhhHhhcccccccccCCCCCHHHHH
Confidence 46789999999999999999999999998 988764 7889999999999999999999999999999
Q ss_pred HHhhC
Q psy16529 90 LEKKA 94 (94)
Q Consensus 90 ~EK~a 94 (94)
|||++
T Consensus 106 qEK~~ 110 (114)
T KOG4794|consen 106 QEKQA 110 (114)
T ss_pred HHhhc
Confidence 99985
No 2
>smart00152 THY Thymosin beta actin-binding motif.
Probab=99.75 E-value=4.2e-19 Score=105.48 Aligned_cols=35 Identities=57% Similarity=0.821 Sum_probs=33.4
Q ss_pred hhhccccCCCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 60 ISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 60 ~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
+++|++||+++||||+|+|||||||+|+|+|||++
T Consensus 1 ~~~ie~Fdk~kLKkteT~EKn~LPtkE~IeqEK~~ 35 (37)
T smart00152 1 IDEIEHFDSENLKKTETIEKNVLPSKEDIEQEKQH 35 (37)
T ss_pred CchhhhcchhhcccccccccCCCCCHHHHHHHHhh
Confidence 57999999999999999999999999999999975
No 3
>smart00152 THY Thymosin beta actin-binding motif.
Probab=99.70 E-value=3.6e-18 Score=101.49 Aligned_cols=36 Identities=44% Similarity=0.662 Sum_probs=34.1
Q ss_pred hhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHH
Q psy16529 11 IEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKE 57 (94)
Q Consensus 11 ~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~ 57 (94)
+++|++||+++||||+|+|||||||+|+ |+|||+++
T Consensus 1 ~~~ie~Fdk~kLKkteT~EKn~LPtkE~-----------IeqEK~~~ 36 (37)
T smart00152 1 IDEIEHFDSENLKKTETIEKNVLPSKED-----------IEQEKQHL 36 (37)
T ss_pred CchhhhcchhhcccccccccCCCCCHHH-----------HHHHHhhc
Confidence 5799999999999999999999999999 99999865
No 4
>PF01290 Thymosin: Thymosin beta-4 family; InterPro: IPR001152 Thymosin beta-4 is a small polypeptide whose exact physiological role is not yet known []. It was first isolated as a thymic hormone that induces terminal deoxynucleotidyltransferase. It is found in high quantity in thymus and spleen but is widely distributed in many tissues. It has also been shown to bind to actin monomers and thus to inhibit actin polymerisation []. A number of peptides closely related to thymosin beta-4 belong to this family. They include, thymosin beta-9 (and beta-8) in Bos taurus (Bovine) and Sus scrofa (Pig), thymosin beta-10 in Homo sapiens (Human) and Rattus norvegicus (Rat), thymosin beta-11 and beta-12 in Oncorhynchus mykiss (Rainbow trout) and human Nb thymosin beta.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0005737 cytoplasm; PDB: 1T44_G 1HJ0_A 3U9Z_C 3U9D_D 1SQK_B 3U8X_D 3SJH_B 2FF6_H.
Probab=99.65 E-value=7.3e-18 Score=101.73 Aligned_cols=40 Identities=45% Similarity=0.669 Sum_probs=36.1
Q ss_pred hhhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHH
Q psy16529 7 HNALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKE 57 (94)
Q Consensus 7 ~~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~ 57 (94)
+++++++|++||+++||||+|+|||+|||+|+ |++||+++
T Consensus 2 d~p~~~eie~Fdk~kLK~~eT~EKn~LPs~e~-----------I~~EK~~~ 41 (41)
T PF01290_consen 2 DKPDMAEIEKFDKSKLKHTETQEKNVLPSKED-----------IEQEKQAK 41 (41)
T ss_dssp --HHHHHHHHHHGGGSBHHHHEEHHHSSSCHH-----------HHHHHHH-
T ss_pred CCcchHHHhccChhhcccccccccCCCCCHHH-----------HHHHHhcC
Confidence 67899999999999999999999999999999 99999864
No 5
>PF01290 Thymosin: Thymosin beta-4 family; InterPro: IPR001152 Thymosin beta-4 is a small polypeptide whose exact physiological role is not yet known []. It was first isolated as a thymic hormone that induces terminal deoxynucleotidyltransferase. It is found in high quantity in thymus and spleen but is widely distributed in many tissues. It has also been shown to bind to actin monomers and thus to inhibit actin polymerisation []. A number of peptides closely related to thymosin beta-4 belong to this family. They include, thymosin beta-9 (and beta-8) in Bos taurus (Bovine) and Sus scrofa (Pig), thymosin beta-10 in Homo sapiens (Human) and Rattus norvegicus (Rat), thymosin beta-11 and beta-12 in Oncorhynchus mykiss (Rainbow trout) and human Nb thymosin beta.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0005737 cytoplasm; PDB: 1T44_G 1HJ0_A 3U9Z_C 3U9D_D 1SQK_B 3U8X_D 3SJH_B 2FF6_H.
Probab=99.61 E-value=1.6e-17 Score=100.25 Aligned_cols=38 Identities=58% Similarity=0.769 Sum_probs=35.2
Q ss_pred HHhhhhccccCCCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 57 EKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 57 ~~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
.+.|++|++||+++|||++|+|||+|||+|+|++||++
T Consensus 3 ~p~~~eie~Fdk~kLK~~eT~EKn~LPs~e~I~~EK~~ 40 (41)
T PF01290_consen 3 KPDMAEIEKFDKSKLKHTETQEKNVLPSKEDIEQEKQA 40 (41)
T ss_dssp -HHHHHHHHHHGGGSBHHHHEEHHHSSSCHHHHHHHHH
T ss_pred CcchHHHhccChhhcccccccccCCCCCHHHHHHHHhc
Confidence 46789999999999999999999999999999999974
No 6
>KOG4794|consensus
Probab=99.30 E-value=4.1e-13 Score=95.81 Aligned_cols=41 Identities=41% Similarity=0.623 Sum_probs=37.8
Q ss_pred chhhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHH
Q psy16529 6 THNALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKE 57 (94)
Q Consensus 6 ~~~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~ 57 (94)
.+++.++++.+||.|+||||||+|||+|||+|+ |+|||+..
T Consensus 71 ~~kp~~~~~~k~~~sklKkTet~EKN~Lpsket-----------ieqEK~~~ 111 (114)
T KOG4794|consen 71 QDKPDLQEIEKFDNSKLKKTETQEKNVLPSKET-----------IEQEKQAQ 111 (114)
T ss_pred hcCCchHHHHHhhHhhcccccccccCCCCCHHH-----------HHHHhhcc
Confidence 456889999999999999999999999999999 99999764
No 7
>PF02205 WH2: WH2 motif; InterPro: IPR003124 The WH2 (WASP-Homology 2, or Wiskott-Aldrich homology 2) domain is an ~18 amino acids actin-binding motif. This domain was first recognised as an essential element for the regulation of the cytoskeleton by the mammalian Wiskott-Aldrich syndrome protein (WASP) family. WH2 proteins occur in eukaryotes from yeast to mammals, in insect viruses, and in some bacteria. The WH2 domain is found as a modular part of larger proteins; it can be associated with the WH1 or EVH1 domain and with the CRIB domain, and the WH2 domain can occur as a tandem repeat. The WH2 domain binds actin monomers and can facilitate the assembly of actin monomers into newly forming actin filaments [, ]. ; GO: 0005515 protein binding; PDB: 2D1K_C 3M1F_V 2A41_C 2A3Z_C 2VCP_E 2A40_F 3P8C_D 3M3N_W.
Probab=77.89 E-value=0.42 Score=26.73 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=16.7
Q ss_pred hhhHhhhhhhcCCCCCccc-cccc
Q psy16529 7 HNALIEGVEAFDTAKLKHA-ETQE 29 (94)
Q Consensus 7 ~~~~~~eve~Fd~skLK~t-eTqE 29 (94)
..+||++|..|.+..|||| +|..
T Consensus 5 R~~LL~~Ir~G~k~~LKkv~~~~d 28 (30)
T PF02205_consen 5 RSALLSQIRKGSKAQLKKVDETND 28 (30)
T ss_dssp HHHHHHHHHHH--HHHBHTSS-EE
T ss_pred HHHHHHHHHHcccccccCCCCCCC
Confidence 4689999999997789999 5543
No 8
>PF15022 DUF4522: Protein of unknown function (DUF4522)
Probab=28.51 E-value=41 Score=24.42 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.3
Q ss_pred HhhhhccccCCCCCcccccccCCCCCCHHHHHHHhh
Q psy16529 58 KLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKK 93 (94)
Q Consensus 58 ~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~ 93 (94)
+++.+|.-=..-+|.+..|.+--.|||.|.|.-|+.
T Consensus 45 pfl~ei~fGs~~~l~~~~t~~~~llPsaesiklEre 80 (117)
T PF15022_consen 45 PFLEEIAFGSPLKLTKCKTKKEGLLPSAESIKLERE 80 (117)
T ss_pred ccceeeecCCeeeeecccccccccCCcHHHHHHHHH
Confidence 346677544566888999998899999999988763
No 9
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=23.43 E-value=47 Score=19.21 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=7.7
Q ss_pred CCCCCCHHHHHH
Q psy16529 79 KNPLPTKEAIDL 90 (94)
Q Consensus 79 Kn~LPtke~Ie~ 90 (94)
.||.||+++.++
T Consensus 7 ~nPYPs~~ek~~ 18 (40)
T PF05920_consen 7 HNPYPSKEEKEE 18 (40)
T ss_dssp TSGS--HHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 589999988764
No 10
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=8.85 E-value=2.2e+02 Score=21.80 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=19.5
Q ss_pred CcchhHHHHhHHHhhhhccccCCCC
Q psy16529 46 KCTSYEDKKSKEKLISGIENFDTGK 70 (94)
Q Consensus 46 ~c~~I~qEK~~~~l~~eIe~Fdk~k 70 (94)
...|+-|| +-.-||..|++||.++
T Consensus 66 ~~~DLiQe-G~iGLi~AierFDp~~ 89 (264)
T PRK07122 66 PRDDLVQV-ARVGLVNAVNRFDVET 89 (264)
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCC
Confidence 45568888 7778999999999875
Done!