Query psy16529
Match_columns 94
No_of_seqs 148 out of 189
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 23:37:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u9z_C Ciboulot, isoform A; co 99.7 6.3E-19 2.1E-23 112.3 2.6 47 4-61 12-58 (58)
2 1hj0_A Thymosin BETA9; actin b 99.7 1.1E-19 3.8E-24 109.1 -4.1 40 7-57 2-41 (41)
3 3sjh_B Ciboulot/thymosin beta- 99.7 3.1E-18 1.1E-22 107.8 0.6 39 56-94 13-51 (54)
4 1hj0_A Thymosin BETA9; actin b 99.7 1.3E-19 4.3E-24 108.9 -5.9 38 57-94 3-40 (41)
5 3u9z_C Ciboulot, isoform A; co 99.7 1.2E-17 4.1E-22 106.4 2.8 41 54-94 13-53 (58)
6 3sjh_B Ciboulot/thymosin beta- 99.6 2.2E-17 7.6E-22 103.9 0.9 40 7-57 13-52 (54)
7 2ff6_H CG4944-PC, isoform C; p 98.9 6.2E-10 2.1E-14 61.2 1.7 25 26-61 1-25 (26)
8 2ff6_H CG4944-PC, isoform C; p 98.8 8.9E-10 3E-14 60.6 1.7 20 75-94 1-20 (26)
9 3m3n_W N-WAsp, neural wiskott- 98.7 2E-09 6.8E-14 74.3 1.5 38 55-94 61-98 (101)
10 3m3n_W N-WAsp, neural wiskott- 98.1 2.9E-07 9.8E-12 63.5 0.0 37 8-57 63-99 (101)
11 1t44_G Chimera of gelsolin dom 98.1 1.2E-06 4.2E-11 62.3 2.7 26 68-93 122-147 (147)
12 1t44_G Chimera of gelsolin dom 97.6 1.4E-05 4.9E-10 56.7 1.1 26 19-55 122-147 (147)
13 3tu5_B Gelsolin, protein cordo 94.0 0.0094 3.2E-07 46.5 0.0 38 57-94 256-294 (297)
14 3tu5_B Gelsolin, protein cordo 88.7 0.083 2.8E-06 41.1 0.0 26 20-56 269-294 (297)
15 2a41_C Wiskott-aldrich syndrom 80.2 0.85 2.9E-05 25.4 1.6 23 7-31 5-27 (32)
16 2vcp_D N-WAsp, neural wiskott- 79.9 2.2 7.4E-05 27.9 3.8 53 8-83 16-68 (93)
17 2d1k_C Metastasis suppressor p 36.1 14 0.00047 20.6 1.1 21 58-80 7-27 (32)
No 1
>3u9z_C Ciboulot, isoform A; contractIle protein, protein binding; HET: ADP; 2.09A {Drosophila melanogaster} PDB: 1sqk_B*
Probab=99.73 E-value=6.3e-19 Score=112.34 Aligned_cols=47 Identities=34% Similarity=0.490 Sum_probs=44.5
Q ss_pred hhchhhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHHHhhh
Q psy16529 4 EKTHNALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKEKLIS 61 (94)
Q Consensus 4 EK~~~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~~l~~ 61 (94)
.|++..++++|++||+++||||+|+|||+|||+|+ |+|||++++|++
T Consensus 12 pkv~~~l~~eie~Fdk~kLKkteTqEKn~LPskE~-----------I~qEK~~~~l~e 58 (58)
T 3u9z_C 12 PKVAENLKSQLEGFDKSKLKNASTQEKIILPTAED-----------VAAEKTQQSIFE 58 (58)
T ss_pred hhhHHHHHHHHHhcChhhcccccccccCCCCCHHH-----------HHHHHHHHHHhC
Confidence 47888999999999999999999999999999999 999999999874
No 2
>1hj0_A Thymosin BETA9; actin binding peptide, T-cell differentiation, immunopotentiation, thymus, actin; NMR {Bos taurus} SCOP: j.86.1.1
Probab=99.70 E-value=1.1e-19 Score=109.12 Aligned_cols=40 Identities=43% Similarity=0.623 Sum_probs=38.0
Q ss_pred hhhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHH
Q psy16529 7 HNALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKE 57 (94)
Q Consensus 7 ~~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~ 57 (94)
+++++++|++||+++||||+|+|||||||+|+ |+|||+++
T Consensus 2 dkpd~~eIe~FdkskLKkteT~EKn~LPtkE~-----------IeqEK~~~ 41 (41)
T 1hj0_A 2 DKPDLGEINSFDKAKLKKTETQEKNTLPTKET-----------IEQEKQAK 41 (41)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSSSTHH-----------HHHHHHHC
T ss_pred CCcchhhhcccchhhcccccccccCCCCCHHH-----------HHHHHhcC
Confidence 68999999999999999999999999999999 99999863
No 3
>3sjh_B Ciboulot/thymosin beta-4 chimeric protein; protein-protein complex, contractIle protein, protein bindin; HET: ATP LAR; 1.75A {Drosophila melanogaster} PDB: 3u8x_B* 3u9d_B*
Probab=99.68 E-value=3.1e-18 Score=107.84 Aligned_cols=39 Identities=59% Similarity=0.819 Sum_probs=17.2
Q ss_pred HHHhhhhccccCCCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 56 KEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 56 ~~~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
...|.++|++||+++||||||+|||+|||+|+|+|||+|
T Consensus 13 ~e~lk~~ie~Fdk~kLKkteTqEKN~LPTkE~IeqEK~a 51 (54)
T 3sjh_B 13 AENLKSQLEGFNQDKLKKTETQEKNPLPSKETIEQEKQA 51 (54)
T ss_dssp HHHHHHHHHHCCGGGSBCC--------------------
T ss_pred hHHHHHHHhccCHhhcccccccccCCCCCHHHHHHHHHh
Confidence 456889999999999999999999999999999999985
No 4
>1hj0_A Thymosin BETA9; actin binding peptide, T-cell differentiation, immunopotentiation, thymus, actin; NMR {Bos taurus} SCOP: j.86.1.1
Probab=99.68 E-value=1.3e-19 Score=108.87 Aligned_cols=38 Identities=55% Similarity=0.730 Sum_probs=35.6
Q ss_pred HHhhhhccccCCCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 57 EKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 57 ~~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
.+.|++|++||+++||||||+|||+|||+|+|+|||+|
T Consensus 3 kpd~~eIe~FdkskLKkteT~EKn~LPtkE~IeqEK~~ 40 (41)
T 1hj0_A 3 KPDLGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQA 40 (41)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSSTHHHHHHHHH
T ss_pred CcchhhhcccchhhcccccccccCCCCCHHHHHHHHhc
Confidence 35689999999999999999999999999999999975
No 5
>3u9z_C Ciboulot, isoform A; contractIle protein, protein binding; HET: ADP; 2.09A {Drosophila melanogaster} PDB: 1sqk_B*
Probab=99.68 E-value=1.2e-17 Score=106.41 Aligned_cols=41 Identities=46% Similarity=0.557 Sum_probs=38.1
Q ss_pred HhHHHhhhhccccCCCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 54 KSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 54 K~~~~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
|-...++++|++||+++||||+|+|||+|||+|+|+|||++
T Consensus 13 kv~~~l~~eie~Fdk~kLKkteTqEKn~LPskE~I~qEK~~ 53 (58)
T 3u9z_C 13 KVAENLKSQLEGFDKSKLKNASTQEKIILPTAEDVAAEKTQ 53 (58)
T ss_pred hhHHHHHHHHHhcChhhcccccccccCCCCCHHHHHHHHHH
Confidence 45667999999999999999999999999999999999973
No 6
>3sjh_B Ciboulot/thymosin beta-4 chimeric protein; protein-protein complex, contractIle protein, protein bindin; HET: ATP LAR; 1.75A {Drosophila melanogaster} PDB: 3u8x_B* 3u9d_B*
Probab=99.64 E-value=2.2e-17 Score=103.95 Aligned_cols=40 Identities=45% Similarity=0.654 Sum_probs=16.0
Q ss_pred hhhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHH
Q psy16529 7 HNALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKE 57 (94)
Q Consensus 7 ~~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~ 57 (94)
...++++|++||+++||||||+|||+|||+|+ |+|||++.
T Consensus 13 ~e~lk~~ie~Fdk~kLKkteTqEKN~LPTkE~-----------IeqEK~a~ 52 (54)
T 3sjh_B 13 AENLKSQLEGFNQDKLKKTETQEKNPLPSKET-----------IEQEKQAG 52 (54)
T ss_dssp HHHHHHHHHHCCGGGSBCC--------------------------------
T ss_pred hHHHHHHHhccCHhhcccccccccCCCCCHHH-----------HHHHHHhc
Confidence 34566669999999999999999999999999 99999875
No 7
>2ff6_H CG4944-PC, isoform C; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.05A {Drosophila melanogaster}
Probab=98.87 E-value=6.2e-10 Score=61.19 Aligned_cols=25 Identities=44% Similarity=0.706 Sum_probs=23.1
Q ss_pred cccccCCCCCcccCCCCCCCCcchhHHHHhHHHhhh
Q psy16529 26 ETQEKNPLPDKDGTKKKPISKCTSYEDKKSKEKLIS 61 (94)
Q Consensus 26 eTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~~l~~ 61 (94)
+|+||||||++|+ |+|||++++++.
T Consensus 1 eT~EKn~LP~kE~-----------ieqEK~~~~l~e 25 (26)
T 2ff6_H 1 ETNEKNPLPDKEG-----------EGEESVHRRHRE 25 (26)
T ss_pred CCCccCCCCCHHH-----------HHHHHHHHHHhc
Confidence 6999999999999 999999998864
No 8
>2ff6_H CG4944-PC, isoform C; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.05A {Drosophila melanogaster}
Probab=98.84 E-value=8.9e-10 Score=60.58 Aligned_cols=20 Identities=55% Similarity=0.614 Sum_probs=18.6
Q ss_pred ccccCCCCCCHHHHHHHhhC
Q psy16529 75 ETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 75 eT~EKn~LPtke~Ie~EK~a 94 (94)
+|+||||||++|+|+|||++
T Consensus 1 eT~EKn~LP~kE~ieqEK~~ 20 (26)
T 2ff6_H 1 ETNEKNPLPDKEGEGEESVH 20 (26)
T ss_pred CCCccCCCCCHHHHHHHHHH
Confidence 69999999999999999973
No 9
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=98.75 E-value=2e-09 Score=74.28 Aligned_cols=38 Identities=50% Similarity=0.684 Sum_probs=0.0
Q ss_pred hHHHhhhhccccCCCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 55 SKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 55 ~~~~l~~eIe~Fdk~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
....|+..|..+ -.||+|+|+|||||||+|+|+|||+|
T Consensus 61 ~r~~Ll~aIr~a--l~lkk~~t~~~n~~p~~~~~~~~~~~ 98 (101)
T 3m3n_W 61 GRDALLDQIRQG--IQLKKTETQEKNPLPSKETIEQEKQA 98 (101)
T ss_dssp ----------------------------------------
T ss_pred chHHHHHHHHHH--HHhcccCchhcCCCCCHHHHHHHHHh
Confidence 456678888886 78999999999999999999999986
No 10
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=98.14 E-value=2.9e-07 Score=63.45 Aligned_cols=37 Identities=43% Similarity=0.644 Sum_probs=0.0
Q ss_pred hhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHH
Q psy16529 8 NALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKE 57 (94)
Q Consensus 8 ~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~ 57 (94)
.+++..|..+ -.||+|+|+|||||||+|+ |+|||++.
T Consensus 63 ~~Ll~aIr~a--l~lkk~~t~~~n~~p~~~~-----------~~~~~~~~ 99 (101)
T 3m3n_W 63 DALLDQIRQG--IQLKKTETQEKNPLPSKET-----------IEQEKQAG 99 (101)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHH--HHhcccCchhcCCCCCHHH-----------HHHHHHhc
Confidence 4566677766 6799999999999999999 99999865
No 11
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=98.10 E-value=1.2e-06 Score=62.27 Aligned_cols=26 Identities=58% Similarity=0.869 Sum_probs=24.7
Q ss_pred CCCCcccccccCCCCCCHHHHHHHhh
Q psy16529 68 TGKLKHTETVEKNPLPTKEAIDLEKK 93 (94)
Q Consensus 68 k~kLKkteT~EKn~LPtke~Ie~EK~ 93 (94)
.|.|||++|+++|||||+|+|+|||+
T Consensus 122 ~s~~k~~et~~~~~~p~~~~~~~~~~ 147 (147)
T 1t44_G 122 ASGFKHVETQEKNPLPSKETIEQEKQ 147 (147)
T ss_dssp CCCCBCCCCEECCCCCCHHHHHHHHC
T ss_pred ccccceeccccccCCCCHhHHhhhcC
Confidence 58999999999999999999999995
No 12
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=97.60 E-value=1.4e-05 Score=56.74 Aligned_cols=26 Identities=54% Similarity=0.823 Sum_probs=24.3
Q ss_pred CCCCccccccccCCCCCcccCCCCCCCCcchhHHHHh
Q psy16529 19 TAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKS 55 (94)
Q Consensus 19 ~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~ 55 (94)
.|.|||++|+++||||++|+ |+|||+
T Consensus 122 ~s~~k~~et~~~~~~p~~~~-----------~~~~~~ 147 (147)
T 1t44_G 122 ASGFKHVETQEKNPLPSKET-----------IEQEKQ 147 (147)
T ss_dssp CCCCBCCCCEECCCCCCHHH-----------HHHHHC
T ss_pred ccccceeccccccCCCCHhH-----------HhhhcC
Confidence 58999999999999999999 999984
No 13
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=94.03 E-value=0.0094 Score=46.45 Aligned_cols=38 Identities=47% Similarity=0.716 Sum_probs=0.0
Q ss_pred HHhhhhccccC-CCCCcccccccCCCCCCHHHHHHHhhC
Q psy16529 57 EKLISGIENFD-TGKLKHTETVEKNPLPTKEAIDLEKKA 94 (94)
Q Consensus 57 ~~l~~eIe~Fd-k~kLKkteT~EKn~LPtke~Ie~EK~a 94 (94)
+++|..|..=- .-+|++++++++||+|+.+.|++|+.+
T Consensus 256 ~A~L~aIrsgtGa~rLkKv~~~~~~P~p~~~~~~~~~~~ 294 (297)
T 3tu5_B 256 QALMDAIRSGTGAARLRKTETQEKNPLPSKETIEQEKQA 294 (297)
T ss_dssp ---------------------------------------
T ss_pred hhhhHhhhcCCCCeeccccccccCCCCCchhhhhHHhhc
Confidence 55677774422 346999999999999999999999875
No 14
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=88.67 E-value=0.083 Score=41.12 Aligned_cols=26 Identities=54% Similarity=0.832 Sum_probs=0.0
Q ss_pred CCCccccccccCCCCCcccCCCCCCCCcchhHHHHhH
Q psy16529 20 AKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSK 56 (94)
Q Consensus 20 skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~ 56 (94)
..|++++++++||||+.+. |.||+..
T Consensus 269 ~rLkKv~~~~~~P~p~~~~-----------~~~~~~~ 294 (297)
T 3tu5_B 269 ARLRKTETQEKNPLPSKET-----------IEQEKQA 294 (297)
T ss_dssp -------------------------------------
T ss_pred eeccccccccCCCCCchhh-----------hhHHhhc
Confidence 4699999999999999998 9999853
No 15
>2a41_C Wiskott-aldrich syndrome protein interacting PROT; WIP, WH2, WAsp, DNAse I, ARP2/3, structural protein; HET: HIC NAG BMA ATP; 2.60A {Bos taurus}
Probab=80.19 E-value=0.85 Score=25.36 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.1
Q ss_pred hhhHhhhhhhcCCCCCccccccccC
Q psy16529 7 HNALIEGVEAFDTAKLKHAETQEKN 31 (94)
Q Consensus 7 ~~~~~~eve~Fd~skLK~teTqEKN 31 (94)
+.++++.|..| .+|||+.|..+.
T Consensus 5 r~aLL~~I~~G--~~Lkk~~t~DrS 27 (32)
T 2a41_C 5 RNALLSDISKG--KKLKKTVTNDRS 27 (32)
T ss_dssp HHHHHHHHHHC--CCCBCCCCEECC
T ss_pred hHHHHHHHHcC--CcCCceecccCc
Confidence 57899999998 999999997664
No 16
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=79.92 E-value=2.2 Score=27.89 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=39.8
Q ss_pred hhHhhhhhhcCCCCCccccccccCCCCCcccCCCCCCCCcchhHHHHhHHHhhhhccccCCCCCcccccccCCCCC
Q psy16529 8 NALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKEKLISGIENFDTGKLKHTETVEKNPLP 83 (94)
Q Consensus 8 ~~~~~eve~Fd~skLK~teTqEKN~LPtke~~~~~~~s~c~~I~qEK~~~~l~~eIe~Fdk~kLKkteT~EKn~LP 83 (94)
.+|++.|-. -..|||+++ |.+|.... ....||++|.. -..|||++..+++..|
T Consensus 16 ~aLl~~Ir~--G~~Lkkv~~---~~~p~~~~----------------~R~dLL~~IR~--G~~LKkv~~~~~~~~~ 68 (93)
T 2vcp_D 16 AALLDQIRE--GAQLKKVEQ---NSRPVSCS----------------GRDALLDQIRQ--GIQLKSVADGQESTPP 68 (93)
T ss_pred hhhHHHHhc--ccccCcCCc---ccCCCCCC----------------cHHHHHHHHHc--ccccCCCcccccccCC
Confidence 577888873 689999997 45565544 35678999988 3579999999888655
No 17
>2d1k_C Metastasis suppressor protein 1; WAsp, WIP, WH2, actin, DNAse I, structural protein; HET: HIC NAG BMA ATP; 2.50A {Bos taurus}
Probab=36.15 E-value=14 Score=20.55 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.2
Q ss_pred HhhhhccccCCCCCcccccccCC
Q psy16529 58 KLISGIENFDTGKLKHTETVEKN 80 (94)
Q Consensus 58 ~l~~eIe~Fdk~kLKkteT~EKn 80 (94)
+|+++|.+ -.+|||++|..+.
T Consensus 7 ~LL~~I~k--G~kLKKt~TnDrS 27 (32)
T 2d1k_C 7 DMLNAIRR--GVKLKKTTTNDRS 27 (32)
T ss_dssp HHHHHHHH--CCCCBCCCCEECC
T ss_pred HHHHHHhc--cCcccceeccccc
Confidence 47888887 6899999997664
Done!