Query psy16529
Match_columns 94
No_of_seqs 148 out of 189
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 23:37:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16529.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16529hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp3a3 a.177.1.1 (A:0-86) Sig 15.8 40 0.0029 19.5 2.0 23 48-71 41-63 (87)
2 d1ku2a2 a.177.1.1 (A:93-272) S 11.8 32 0.0023 21.6 0.7 23 47-70 132-154 (180)
3 d1k61a_ a.4.1.1 (A:) mat alpha 10.9 61 0.0044 17.5 1.7 12 79-90 22-33 (60)
4 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 8.4 94 0.0069 17.1 1.9 13 78-90 28-40 (67)
5 d1x2na1 a.4.1.1 (A:6-67) Homeo 7.4 1E+02 0.0074 16.7 1.7 12 79-90 26-37 (62)
6 d1s7ea1 a.4.1.1 (A:103-152) He 6.9 1.2E+02 0.0088 15.3 1.8 13 78-90 18-30 (50)
7 d1au7a1 a.4.1.1 (A:103-160) Pi 6.7 85 0.0062 16.7 1.1 12 79-90 20-31 (58)
8 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 5.9 1.4E+02 0.01 16.3 1.8 12 79-90 25-36 (73)
9 d1t3qa1 a.56.1.1 (A:88-168) Qu 5.6 1E+02 0.0073 18.1 1.1 14 78-91 36-49 (81)
10 d1e3oc1 a.4.1.1 (C:104-160) Oc 5.6 1.1E+02 0.0077 16.3 1.1 13 78-90 18-30 (57)
No 1
>d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=15.79 E-value=40 Score=19.52 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.9
Q ss_pred chhHHHHhHHHhhhhccccCCCCC
Q psy16529 48 TSYEDKKSKEKLISGIENFDTGKL 71 (94)
Q Consensus 48 ~~I~qEK~~~~l~~eIe~Fdk~kL 71 (94)
.|+.|+ +--.|+..|.+||.++=
T Consensus 41 eDL~q~-G~igL~~A~~~yd~~~g 63 (87)
T d1rp3a3 41 RDLISY-GVIGLIKAVDNLSTENP 63 (87)
T ss_dssp HHHHHH-HHHHHHHHHHTCCCCCT
T ss_pred HHHHHH-HHHHHHHHHHhhCCCCC
Confidence 457777 67889999999999864
No 2
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=11.77 E-value=32 Score=21.60 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.5
Q ss_pred cchhHHHHhHHHhhhhccccCCCC
Q psy16529 47 CTSYEDKKSKEKLISGIENFDTGK 70 (94)
Q Consensus 47 c~~I~qEK~~~~l~~eIe~Fdk~k 70 (94)
..|+-|| +-.-|+..|++||.++
T Consensus 132 ~~dl~q~-g~~gl~~a~~~fd~~~ 154 (180)
T d1ku2a2 132 FLDLIQE-GNQGLIRAVEKFEYKR 154 (180)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCGGG
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCC
Confidence 3468888 6778899999999875
No 3
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.91 E-value=61 Score=17.46 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.8
Q ss_pred CCCCCCHHHHHH
Q psy16529 79 KNPLPTKEAIDL 90 (94)
Q Consensus 79 Kn~LPtke~Ie~ 90 (94)
.||-||.+++++
T Consensus 22 ~~pyPs~~e~~~ 33 (60)
T d1k61a_ 22 ENPYLDTKGLEN 33 (60)
T ss_dssp TSCCCCHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 579999998764
No 4
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.43 E-value=94 Score=17.14 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.3
Q ss_pred cCCCCCCHHHHHH
Q psy16529 78 EKNPLPTKEAIDL 90 (94)
Q Consensus 78 EKn~LPtke~Ie~ 90 (94)
++|+-|+.+++++
T Consensus 28 ~~n~~P~~~~r~~ 40 (67)
T d1ocpa_ 28 LKCPKPSLQQITH 40 (67)
T ss_dssp SSCSCCCHHHHHH
T ss_pred HHccCCCHHHHHH
Confidence 4689999988764
No 5
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.41 E-value=1e+02 Score=16.65 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=9.7
Q ss_pred CCCCCCHHHHHH
Q psy16529 79 KNPLPTKEAIDL 90 (94)
Q Consensus 79 Kn~LPtke~Ie~ 90 (94)
.||-||.+++++
T Consensus 26 ~nPyPs~~e~~~ 37 (62)
T d1x2na1 26 GHPYPTEDEKKQ 37 (62)
T ss_dssp TSCCCCHHHHHH
T ss_pred cCCCcCHHHHHH
Confidence 699999988764
No 6
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.85 E-value=1.2e+02 Score=15.34 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=10.0
Q ss_pred cCCCCCCHHHHHH
Q psy16529 78 EKNPLPTKEAIDL 90 (94)
Q Consensus 78 EKn~LPtke~Ie~ 90 (94)
+.|+-|+.+++++
T Consensus 18 ~~n~~P~~~~~~~ 30 (50)
T d1s7ea1 18 KENKRPSKELQIT 30 (50)
T ss_dssp TSSCSSTHHHHHH
T ss_pred HHCCCCCHHHHHH
Confidence 4688899888764
No 7
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.65 E-value=85 Score=16.73 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=9.5
Q ss_pred CCCCCCHHHHHH
Q psy16529 79 KNPLPTKEAIDL 90 (94)
Q Consensus 79 Kn~LPtke~Ie~ 90 (94)
+|+-|+.+++++
T Consensus 20 ~~~~P~~~~~~~ 31 (58)
T d1au7a1 20 EHSKPSSQEIMR 31 (58)
T ss_dssp HCSSCCHHHHHH
T ss_pred HccCCCHHHHHH
Confidence 588999988764
No 8
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.90 E-value=1.4e+02 Score=16.34 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHH
Q psy16529 79 KNPLPTKEAIDL 90 (94)
Q Consensus 79 Kn~LPtke~Ie~ 90 (94)
.||-||.++.++
T Consensus 25 ~~pYPs~~~k~~ 36 (73)
T d1pufb_ 25 SNPYPSEEAKEE 36 (73)
T ss_dssp TSCCCCHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 589999988654
No 9
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=5.64 E-value=1e+02 Score=18.09 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.1
Q ss_pred cCCCCCCHHHHHHH
Q psy16529 78 EKNPLPTKEAIDLE 91 (94)
Q Consensus 78 EKn~LPtke~Ie~E 91 (94)
.+||-||.++|..-
T Consensus 36 ~~~~~ps~~ei~~a 49 (81)
T d1t3qa1 36 AENPAPSRDEVREV 49 (81)
T ss_dssp HHCSSCCHHHHHHH
T ss_pred hcCCCCCHHHHHHH
Confidence 46899999998753
No 10
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.61 E-value=1.1e+02 Score=16.29 Aligned_cols=13 Identities=46% Similarity=0.570 Sum_probs=9.8
Q ss_pred cCCCCCCHHHHHH
Q psy16529 78 EKNPLPTKEAIDL 90 (94)
Q Consensus 78 EKn~LPtke~Ie~ 90 (94)
+.|+-|+.+++++
T Consensus 18 ~~~~~P~~~~~~~ 30 (57)
T d1e3oc1 18 MENQKPTSEDITL 30 (57)
T ss_dssp HHCSSCCHHHHHH
T ss_pred HhcCCCCHHHHHH
Confidence 3588899888764
Done!