RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16529
(94 letters)
>3u9z_C Ciboulot, isoform A; contractIle protein, protein binding; HET:
ADP; 2.09A {Drosophila melanogaster} PDB: 1sqk_B*
Length = 58
Score = 29.8 bits (66), Expect = 0.030
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 54 KSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEK 92
K E L S +E FD KLK+ T EK LPT E + EK
Sbjct: 13 KVAENLKSQLEGFDKSKLKNASTQEKIILPTAEDVAAEK 51
Score = 24.8 bits (53), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 5 KTHNALIEGVEAFDTAKLKHAETQEKNPLPDKD 37
K L +E FD +KLK+A TQEK LP +
Sbjct: 13 KVAENLKSQLEGFDKSKLKNASTQEKIILPTAE 45
>3sjh_B Ciboulot/thymosin beta-4 chimeric protein; protein-protein
complex, contractIle protein, protein bindin; HET: ATP
LAR; 1.75A {Drosophila melanogaster} PDB: 3u8x_B*
3u9d_B*
Length = 54
Score = 29.5 bits (65), Expect = 0.034
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 54 KSKEKLISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94
K E L S +E F+ KLK TET EKNPLP+KE I+ EK+A
Sbjct: 11 KVAENLKSQLEGFNQDKLKKTETQEKNPLPSKETIEQEKQA 51
Score = 24.1 bits (51), Expect = 4.1
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 14 VEAFDTAKLKHAETQEKNPLPDKDGTKKK 42
+E F+ KLK ETQEKNPLP K+ +++
Sbjct: 20 LEGFNQDKLKKTETQEKNPLPSKETIEQE 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.054
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 46/116 (39%)
Query: 15 EAFDTAKLKHAETQ---------EKNPLPDK----DGTKKKPISK------CTSYEDKKS 55
+ ++ A H + NP + G K K I + + D K
Sbjct: 1644 DVWNRAD-NHFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 56 K---------EKLISGIENFDTGKLKHTE-------TVEKNPLPTKEAI--DLEKK 93
K E S + G L T+ +EK A DL+ K
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-------AAFEDLKSK 1750
Score = 25.8 bits (56), Expect = 2.5
Identities = 4/33 (12%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 52 DKKSKEKLIS-----GIENFDTGKLKHTETVEK 79
D ++ + + + ++ D +L+ + ++E+
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific;
histone methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 27.9 bits (61), Expect = 0.43
Identities = 13/63 (20%), Positives = 19/63 (30%)
Query: 22 LKHAETQEKNPLPDKDGTKKKPISKCTSYEDKKSKEKLISGIENFDTGKLKHTETVEKNP 81
+ H K PL KK +S + L FD L+ E P
Sbjct: 1 MGHHHHHHKKPLKKGRANKKNDRDSPSSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTP 60
Query: 82 LPT 84
+ +
Sbjct: 61 IQS 63
>1hj0_A Thymosin BETA9; actin binding peptide, T-cell differentiation,
immunopotentiation, thymus, actin; NMR {Bos taurus}
SCOP: j.86.1.1
Length = 41
Score = 25.9 bits (56), Expect = 0.51
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 60 ISGIENFDTGKLKHTETVEKNPLPTKEAIDLEKKA 94
+ I +FD KLK TET EKN LPTKE I+ EK+A
Sbjct: 6 LGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQA 40
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer,
ATP-binding, actin cytoskeleton, methylation, M
protein, actin-binding, motor protein; HET: HIC ATP;
7.00A {Mus musculus}
Length = 101
Score = 27.0 bits (59), Expect = 0.64
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 20 AKLKHAETQEKNPLPD---------KDGTKKKPISKCTSYEDKKSKEKLISGIENFDTGK 70
A+LK E + + G + K + + + ++ L+ I +
Sbjct: 17 AQLKKVEQNSRPVSASGRDALLDQIRQGIQLKKVEQNSRPVSASGRDALLDQIRQ--GIQ 74
Query: 71 LKHTETVEKNPLPTKEAIDLEKKA 94
LK TET EKNPLP+KE I+ EK+A
Sbjct: 75 LKKTETQEKNPLPSKETIEQEKQA 98
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt,
transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Length = 339
Score = 26.1 bits (57), Expect = 2.2
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 32 PLPDK---DGTKKKPISKCTSYEDKKS-----------KEKLISGIENF--DTGKLK 72
P+ +K + K++ + K + D+ EKL GI F D L
Sbjct: 270 PIENKLNSESAKEEGVEKVSFINDEPHFRYVLNEDQMATEKLSDGIRKFSADIEALY 326
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 25.7 bits (56), Expect = 2.2
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 51 EDKKSKEKLISGIENF--DTGKLK 72
+D + +KL GI F D KL+
Sbjct: 307 QDPMAVDKLAEGIRKFAIDQEKLE 330
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE;
1.90A {Prochlorococcus marinus str}
Length = 334
Score = 25.3 bits (55), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 51 EDKKSKEKLISGIENF--DTGKLK 72
ED+ + EKL GI F +L+
Sbjct: 292 EDQMASEKLSEGITGFSKAIEELE 315
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 25.2 bits (55), Expect = 4.3
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 20 AKLKHAETQEKNPLPDKDGTK-KKPISKCTSYEDKKSKEKLISGIEN 65
+ + + P+ D + K +K KE+ SGI N
Sbjct: 319 FQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAASGITN 365
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 25.0 bits (54), Expect = 4.5
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 51 EDKKSKEKLISGIENF--DTGKLK 72
E+ + KL GI F DT +L+
Sbjct: 315 ENAMATHKLAEGIRLFTKDTIELE 338
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural
genomics, PSI-2, protein structure initiative; 2.79A
{Oleispira antarctica}
Length = 329
Score = 24.9 bits (54), Expect = 4.7
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 51 EDKKSKEKLISGIENF--DTGKLK 72
D + +KL GI F D L+
Sbjct: 295 NDPMAHDKLADGIRRFAADQVTLE 318
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 24.1 bits (52), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 51 EDKKSKEKLISGIENF--DTGKLK 72
ED+ + EKL GI F D KL+
Sbjct: 297 EDQMAVEKLSDGIRKFAADAIKLE 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.302 0.124 0.333
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,323,127
Number of extensions: 64295
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 21
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (24.0 bits)