RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16529
         (94 letters)



>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus
          [TaxId: 984]}
          Length = 481

 Score = 24.9 bits (53), Expect = 1.8
 Identities = 6/44 (13%), Positives = 17/44 (38%)

Query: 1  VKAEKTHNALIEGVEAFDTAKLKHAETQEKNPLPDKDGTKKKPI 44
          V + +T   +++ V+     ++     ++   +    G    PI
Sbjct: 3  VASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPI 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.124    0.333 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,893
Number of extensions: 12830
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.4 bits)