BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1653
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T940|UBX_JUNCO Homeotic protein ultrabithorax OS=Junonia coenia GN=Ubx PE=2 SV=1
Length = 253
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/93 (97%), Positives = 91/93 (97%)
Query: 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK
Sbjct: 154 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 213
Query: 62 LKKEIQAIKELNEQEKQAQAQKAAAAALAAAAV 94
LKKEIQAIKELNEQEKQAQAQKAAAAA AAAA
Sbjct: 214 LKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAA 246
>sp|P83950|UBX_DROSI Homeotic protein ultrabithorax OS=Drosophila simulans GN=Ubx PE=3
SV=1
Length = 389
Score = 153 bits (387), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM
Sbjct: 289 LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 348
Query: 61 KLKKEIQAIKELN 73
KLKKEIQAIKELN
Sbjct: 349 KLKKEIQAIKELN 361
>sp|P83949|UBX_DROME Homeotic protein ultrabithorax OS=Drosophila melanogaster GN=Ubx
PE=1 SV=1
Length = 389
Score = 153 bits (387), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM
Sbjct: 289 LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 348
Query: 61 KLKKEIQAIKELN 73
KLKKEIQAIKELN
Sbjct: 349 KLKKEIQAIKELN 361
>sp|P20822|UBX_DROPS Homeotic protein ultrabithorax OS=Drosophila pseudoobscura
pseudoobscura GN=Ubx PE=2 SV=3
Length = 385
Score = 147 bits (372), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM
Sbjct: 284 LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 343
Query: 61 KLKKEIQAIKELN 73
KLKKEIQAIKELN
Sbjct: 344 KLKKEIQAIKELN 356
>sp|P29552|ABDA_AEDAE Homeobox protein abdominal-A homolog OS=Aedes aegypti GN=abd-A
PE=3 SV=2
Length = 239
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/75 (86%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
Query: 2 GANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 15 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 74
Query: 61 KLKKEIQAIKELNEQ 75
KLKKE++A+KE+NEQ
Sbjct: 75 KLKKELRAVKEINEQ 89
>sp|Q05007|ABDA_ARTSF Homeobox protein abdominal-A homolog (Fragment) OS=Artemia
franciscana GN=ABDA PE=3 SV=1
Length = 139
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 70/74 (94%), Gaps = 1/74 (1%)
Query: 3 ANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
NG RRRGRQTYTRYQTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRMK
Sbjct: 1 PNGCPRRRGRQTYTRYQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 60
Query: 62 LKKEIQAIKELNEQ 75
LKKE++A+KE+NEQ
Sbjct: 61 LKKELRAVKEINEQ 74
>sp|B0W1V2|ABDA_CULQU Homeobox protein abdominal-A homolog OS=Culex quinquefasciatus
GN=abd-A PE=3 SV=1
Length = 216
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 70/74 (94%), Gaps = 1/74 (1%)
Query: 3 ANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRMK
Sbjct: 38 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 97
Query: 62 LKKEIQAIKELNEQ 75
LKKE++A+KE+NEQ
Sbjct: 98 LKKELRAVKEINEQ 111
>sp|P29555|ABDA_DROME Homeobox protein abdominal-A OS=Drosophila melanogaster GN=abd-A
PE=2 SV=2
Length = 590
Score = 135 bits (340), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/88 (75%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
Query: 2 GANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 392 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 451
Query: 61 KLKKEIQAIKELNEQEKQAQAQKAAAAA 88
KLKKE++A+KE+NEQ ++ + ++ A
Sbjct: 452 KLKKELRAVKEINEQARRDREEQEKMKA 479
>sp|P29556|ABDA_SCHGR Homeobox protein abdominal-A homolog (Fragment) OS=Schistocerca
gregaria GN=ABD-A PE=3 SV=1
Length = 157
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 70/74 (94%), Gaps = 1/74 (1%)
Query: 3 ANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRMK
Sbjct: 1 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 60
Query: 62 LKKEIQAIKELNEQ 75
LKKE++A+KE+NEQ
Sbjct: 61 LKKELRAVKEINEQ 74
>sp|Q26430|ABDA_MANSE Homeobox protein abdominal-A homolog (Fragment) OS=Manduca sexta
GN=ABD-A PE=3 SV=1
Length = 97
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 71/74 (95%), Gaps = 1/74 (1%)
Query: 3 ANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
+NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRMK
Sbjct: 1 SNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 60
Query: 62 LKKEIQAIKELNEQ 75
LKKE++A+KE+NEQ
Sbjct: 61 LKKELRAVKEINEQ 74
>sp|Q07961|ABDA_TRICA Homeobox protein abdominal-A homolog OS=Tribolium castaneum
GN=ABD-A PE=2 SV=2
Length = 343
Score = 132 bits (332), Expect = 7e-31, Method: Composition-based stats.
Identities = 63/73 (86%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 2 GANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 210 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 269
Query: 61 KLKKEIQAIKELN 73
KLKKE++A+KE+N
Sbjct: 270 KLKKELRAVKEIN 282
>sp|P15856|ABDA_APIME Homeobox protein abdominal-A homolog (Fragment) OS=Apis mellifera
GN=ABD-A PE=3 SV=1
Length = 74
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 69/73 (94%), Gaps = 1/73 (1%)
Query: 2 GANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 2 GPNGCPRRRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 61
Query: 61 KLKKEIQAIKELN 73
KLKKE++A+KE+N
Sbjct: 62 KLKKELRAVKEIN 74
>sp|O76762|ABDA_ANOGA Homeobox protein abdominal-A homolog OS=Anopheles gambiae GN=abd-A
PE=2 SV=1
Length = 308
Score = 127 bits (318), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/83 (78%), Positives = 76/83 (91%), Gaps = 1/83 (1%)
Query: 2 GANGL-RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G NG RRRGRQTYTR+QTLELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 132 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 191
Query: 61 KLKKEIQAIKELNEQEKQAQAQK 83
KLKKE++A+KE+NEQ ++ + ++
Sbjct: 192 KLKKELRAVKEINEQARREREEQ 214
>sp|P21523|HLOX2_HIRME Homeobox protein LOX2 (Fragment) OS=Hirudo medicinalis GN=LOX2
PE=2 SV=1
Length = 118
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/71 (84%), Positives = 64/71 (90%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
RRRGRQTYTRYQTLELEKEF N YLTRRRRIE++H L LTERQIKIWFQNRRMK KKE+
Sbjct: 6 RRRGRQTYTRYQTLELEKEFKFNRYLTRRRRIELSHTLYLTERQIKIWFQNRRMKEKKEV 65
Query: 67 QAIKELNEQEK 77
QAI+ELNE EK
Sbjct: 66 QAIRELNEIEK 76
>sp|Q01622|HLOX2_HELRO Homeobox protein LOX2 (Fragment) OS=Helobdella robusta GN=LOX2 PE=2
SV=1
Length = 429
Score = 122 bits (307), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/71 (84%), Positives = 64/71 (90%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
RRRGRQTYTRYQTLELEKEF N YLTRRRRIE++H L LTERQIKIWFQNRRMK KKE+
Sbjct: 217 RRRGRQTYTRYQTLELEKEFKFNRYLTRRRRIELSHTLYLTERQIKIWFQNRRMKEKKEV 276
Query: 67 QAIKELNEQEK 77
QAI+ELNE EK
Sbjct: 277 QAIRELNEIEK 287
>sp|P09071|HXA7_XENLA Homeobox protein Hox-A7 OS=Xenopus laevis GN=hoxa7 PE=2 SV=1
Length = 209
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 66/89 (74%), Gaps = 3/89 (3%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 122 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE- 180
Query: 67 QAIKELNEQEKQAQAQKAAAAALAAAAVD 95
KE ++Q A + A A D
Sbjct: 181 --HKEESDQTPDAGEESTAPTTTADDDKD 207
>sp|P02830|HXA7_MOUSE Homeobox protein Hox-A7 OS=Mus musculus GN=Hoxa7 PE=2 SV=2
Length = 229
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 68/87 (78%), Gaps = 5/87 (5%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 129 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 188
Query: 67 QAIKELNEQEKQAQAQKAAAAALAAAA 93
+ +E + A + A +++ AA
Sbjct: 189 K-----DESQAPTAAPEDAVPSVSTAA 210
>sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=Hoxb6 PE=2 SV=2
Length = 224
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 58/65 (89%), Gaps = 2/65 (3%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G +G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 142 FGPSG--RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 199
Query: 61 KLKKE 65
K KKE
Sbjct: 200 KWKKE 204
>sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus GN=Hoxb7 PE=2 SV=2
Length = 219
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 196
Query: 67 QAIKELNEQEKQAQAQ 82
+ + +A+A
Sbjct: 197 KTSGPGTTGQDKAEAD 212
>sp|P04476|HXB7B_XENLA Homeobox protein Hox-B7-B OS=Xenopus laevis GN=hoxb7-b PE=2 SV=1
Length = 220
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62
A R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AH LCLTERQIKIWFQNRRMK
Sbjct: 134 AGSDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKW 193
Query: 63 KKEIQA-IKELNEQEKQ 78
KKE +A N QEK
Sbjct: 194 KKENKASSPSSNSQEKP 210
>sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=HOXB6 PE=1 SV=4
Length = 224
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 58/65 (89%), Gaps = 2/65 (3%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G +G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 142 FGPSG--RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 199
Query: 61 KLKKE 65
K KKE
Sbjct: 200 KWKKE 204
>sp|Q9IA25|HXA7_HETFR Homeobox protein Hox-A7 OS=Heterodontus francisci GN=HOXA7 PE=3
SV=1
Length = 208
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 135 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKET 194
Query: 67 QA-IKELNEQEKQ 78
+A +EKQ
Sbjct: 195 KAGSSSTTSEEKQ 207
>sp|Q24645|ANTP_DROSU Homeotic protein antennapedia OS=Drosophila subobscura GN=Antp PE=3
SV=1
Length = 394
Score = 119 bits (299), Expect = 5e-27, Method: Composition-based stats.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 313 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 371
>sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HOXB7 PE=2 SV=1
Length = 217
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 195
>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla gorilla GN=HOXB7 PE=3
SV=1
Length = 217
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 195
>sp|Q9YGT4|HXB6B_DANRE Homeobox protein Hox-B6b OS=Danio rerio GN=hoxb6b PE=2 SV=2
Length = 224
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)
Query: 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
G+ G RRGRQTYTR+QTLELEKEFH N YLTRRRRIE++HALCLTERQIKIWFQNRRMK
Sbjct: 144 GSTG--RRGRQTYTRFQTLELEKEFHFNRYLTRRRRIEISHALCLTERQIKIWFQNRRMK 201
Query: 62 LKKEIQAIKE--LNEQEKQAQA 81
KKE +A+ ++++E +A
Sbjct: 202 WKKENKAVNSAKVSDEEDGGKA 223
>sp|Q90VZ9|HXA7_CHICK Homeobox protein Hox-A7 OS=Gallus gallus GN=HOXA7 PE=2 SV=1
Length = 219
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 129 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 187
>sp|A2T7F3|HXA7_PANTR Homeobox protein Hox-A7 OS=Pan troglodytes GN=HOXA7 PE=3 SV=1
Length = 230
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 130 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 188
>sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus GN=Hoxb7 PE=2 SV=2
Length = 217
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 55/59 (93%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AH LCLTERQIKIWFQNRRMK KKE
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 195
>sp|P31268|HXA7_HUMAN Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=2 SV=3
Length = 230
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 130 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 188
>sp|P31267|HXA6_HUMAN Homeobox protein Hox-A6 OS=Homo sapiens GN=HOXA6 PE=2 SV=2
Length = 233
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Query: 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
G++G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRMK
Sbjct: 152 GSHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 209
Query: 62 LKKEIQAIKELNEQEKQAQAQ 82
KKE + I + ++A+
Sbjct: 210 WKKENKLINSTQPSGEDSEAK 230
>sp|Q91771|HXB7A_XENLA Homeobox protein Hox-B7-A OS=Xenopus laevis GN=hoxb7-a PE=2 SV=1
Length = 220
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/62 (87%), Positives = 57/62 (91%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AH LCLTERQIKIWFQNRRMK KKE
Sbjct: 140 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHVLCLTERQIKIWFQNRRMKWKKEN 199
Query: 67 QA 68
+A
Sbjct: 200 KA 201
>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4
Length = 217
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 55/59 (93%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AH LCLTERQIKIWFQNRRMK KKE
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 195
>sp|P02833|ANTP_DROME Homeotic protein antennapedia OS=Drosophila melanogaster GN=Antp
PE=1 SV=1
Length = 378
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 297 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 355
>sp|P15861|HXB6A_DANRE Homeobox protein Hox-B6a OS=Danio rerio GN=hoxb6a PE=2 SV=1
Length = 228
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 57/62 (91%)
Query: 8 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 67
RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE +
Sbjct: 151 RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 210
Query: 68 AI 69
I
Sbjct: 211 LI 212
>sp|P24061|HXA7_COTJA Homeobox protein Hox-A7 OS=Coturnix coturnix japonica GN=HOXA7 PE=2
SV=1
Length = 242
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 55/59 (93%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65
R+RGRQTYTRYQTLELEKEFH N YLTRRRRIE AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 129 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEYAHALCLTERQIKIWFQNRRMKWKKE 187
>sp|P09092|HXA6_MOUSE Homeobox protein Hox-A6 OS=Mus musculus GN=Hoxa6 PE=2 SV=2
Length = 232
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Query: 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
G++G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRMK
Sbjct: 151 GSHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 208
Query: 62 LKKEIQAIKELNEQEKQAQAQ 82
KKE + I + ++A+
Sbjct: 209 WKKENKLINSTQASGEDSEAK 229
>sp|Q1KKY0|HXB6A_TAKRU Homeobox protein Hox-B6a OS=Takifugu rubripes GN=hoxb6a PE=3 SV=1
Length = 274
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G+ G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 185 FGSPG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 242
Query: 61 KLKKEIQAI 69
K KKE + I
Sbjct: 243 KWKKENKLI 251
>sp|Q5YLH5|HXA6_CHICK Homeobox protein Hox-A6 OS=Gallus gallus GN=HOXA6 PE=2 SV=1
Length = 231
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Query: 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61
GA+G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRMK
Sbjct: 150 GAHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 207
Query: 62 LKKEIQAI 69
KKE + I
Sbjct: 208 WKKENKFI 215
>sp|Q1KKX1|HXB6B_TAKRU Homeobox protein Hox-B6b OS=Takifugu rubripes GN=hoxb6b PE=3 SV=1
Length = 233
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 58/65 (89%), Gaps = 2/65 (3%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G +G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE++HALCLTERQIKIWFQNRRM
Sbjct: 151 FGNSG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEISHALCLTERQIKIWFQNRRM 208
Query: 61 KLKKE 65
K KKE
Sbjct: 209 KWKKE 213
>sp|Q9PWD4|HXA7_MORSA Homeobox protein Hox-A7 OS=Morone saxatilis GN=hoxa7 PE=3 SV=1
Length = 225
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 58/63 (92%)
Query: 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62
++ R+RGRQTY+RYQTLELEKEFH N YLTRRRRIE+AHALCL+ERQIKIWFQNRRMK
Sbjct: 122 SDPTRKRGRQTYSRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 181
Query: 63 KKE 65
KK+
Sbjct: 182 KKD 184
>sp|Q8AWY9|HXB7A_DANRE Homeobox protein Hox-B7a OS=Danio rerio GN=hoxb7a PE=2 SV=1
Length = 227
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66
R+RGRQTY+RYQTLELEKEFH N YL+RRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 145 RKRGRQTYSRYQTLELEKEFHFNRYLSRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 204
Query: 67 QAIKELNEQEKQ 78
++ + Q
Sbjct: 205 KSTDRCSPAADQ 216
>sp|P15862|HXC6A_DANRE Homeobox protein Hox-C6a OS=Danio rerio GN=hoxc6a PE=2 SV=2
Length = 231
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 60/82 (73%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G RRRGRQ Y+RYQTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRM
Sbjct: 136 VGYGSDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRM 195
Query: 61 KLKKEIQAIKELNEQEKQAQAQ 82
K KKE + E Q
Sbjct: 196 KWKKETNLTSTVPGTESAGTPQ 217
>sp|P09077|SCR_DROME Homeotic protein Sex combs reduced OS=Drosophila melanogaster
GN=Scr PE=1 SV=5
Length = 417
Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/65 (81%), Positives = 57/65 (87%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+ ANG +R R +YTRYQTLELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRM
Sbjct: 318 VNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 377
Query: 61 KLKKE 65
K KKE
Sbjct: 378 KWKKE 382
>sp|Q9IA24|HXA6_HETFR Homeobox protein Hox-A6 OS=Heterodontus francisci GN=HOXA6 PE=3
SV=1
Length = 229
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
G +G RRGRQTYTR+QTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRM
Sbjct: 147 FGPHG--RRGRQTYTRFQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRM 204
Query: 61 KLKKEIQAIKELNEQEKQAQ 80
K KKE + + ++A+
Sbjct: 205 KWKKENKLLNTTESNSEEAE 224
>sp|O42504|HXC6A_TAKRU Homeobox protein Hox-C6a OS=Takifugu rubripes GN=hoxc6a PE=3 SV=1
Length = 236
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 63/83 (75%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G RRRGRQ Y+RYQTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRM
Sbjct: 134 VGYGTDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRM 193
Query: 61 KLKKEIQAIKELNEQEKQAQAQK 83
K KKE + E+ +Q+
Sbjct: 194 KWKKESNLTSTVTGSEQTGGSQE 216
>sp|P09634|HXA7_RAT Homeobox protein Hox-A7 (Fragment) OS=Rattus norvegicus GN=Hoxa7
PE=2 SV=1
Length = 105
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 7/93 (7%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G +G +RGRQTYTRYQTLELEKEFH N YLTRRR +E+AHALCLTERQIKIWFQNRRM
Sbjct: 1 LGPDG--KRGRQTYTRYQTLELEKEFHFNRYLTRRRAVEIAHALCLTERQIKIWFQNRRM 58
Query: 61 KLKKEIQAIKELNEQEKQAQAQKAAAAALAAAA 93
K KKE + +E + + A +++ AA
Sbjct: 59 KWKKEHK-----DESQAPTAVPEDAVPSVSTAA 86
>sp|P14839|HXB6_CHICK Homeobox protein Hox-B6 (Fragment) OS=Gallus gallus GN=HOXB6 PE=3
SV=1
Length = 84
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 67/80 (83%), Gaps = 2/80 (2%)
Query: 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64
G RRGRQTYTRYQTLELEKEFH N YLTRRRRIE+AH+LCLTERQIKIWFQNRRMK KK
Sbjct: 5 GPARRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHSLCLTERQIKIWFQNRRMKWKK 64
Query: 65 E--IQAIKELNEQEKQAQAQ 82
E + + +L+ +E++ A+
Sbjct: 65 ENKLLSSSQLSAEEEEKTAE 84
>sp|Q9PWM5|HXC6B_DANRE Homeobox protein Hox-C6b OS=Danio rerio GN=hoxc6b PE=2 SV=1
Length = 227
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 60/84 (71%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G RRRGRQ Y+RYQTLELEKEFH N YLTRRRRIE+A+ LCL+ERQIKIWFQNRRM
Sbjct: 129 VGYGSDRRRGRQIYSRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQIKIWFQNRRM 188
Query: 61 KLKKEIQAIKELNEQEKQAQAQKA 84
K KKE LN+ Q
Sbjct: 189 KWKKESNLTSILNDNGSVGAGQDT 212
>sp|P02832|HXC6_XENLA Homeobox protein Hox-C6 OS=Xenopus laevis GN=hoxc6 PE=2 SV=2
Length = 234
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 64/90 (71%), Gaps = 6/90 (6%)
Query: 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60
+G RRRGRQ Y+RYQTLELEKEFH N YLTRRRRIE+A+ALCLTERQIKIWFQNRRM
Sbjct: 135 VGYGTDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRM 194
Query: 61 KLKKEIQAIKELNEQEKQAQAQKAAAAALA 90
K KKE L AAA +LA
Sbjct: 195 KWKKESNLSSTL------PGGTGAAADSLA 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,483,898
Number of Sequences: 539616
Number of extensions: 974505
Number of successful extensions: 7410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 5945
Number of HSP's gapped (non-prelim): 1487
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)