Query psy1653
Match_columns 96
No_of_seqs 102 out of 1024
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:38:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.9 1.3E-21 4.4E-26 113.4 8.5 67 2-68 2-68 (80)
2 2dmu_A Homeobox protein goosec 99.9 1.6E-21 5.4E-26 110.4 7.2 65 2-66 2-66 (70)
3 2cra_A Homeobox protein HOX-B1 99.9 1.2E-21 4E-26 111.0 6.5 63 3-65 3-65 (70)
4 2h1k_A IPF-1, pancreatic and d 99.9 1.7E-21 5.7E-26 108.3 6.6 60 6-65 2-61 (63)
5 2da2_A Alpha-fetoprotein enhan 99.9 1.6E-21 5.6E-26 110.3 6.5 64 2-65 2-65 (70)
6 2e1o_A Homeobox protein PRH; D 99.8 3.4E-21 1.1E-25 109.1 7.7 65 2-66 2-66 (70)
7 2dmq_A LIM/homeobox protein LH 99.8 3.8E-21 1.3E-25 111.3 8.1 65 2-66 2-66 (80)
8 2vi6_A Homeobox protein nanog; 99.8 9.2E-22 3.1E-26 109.0 4.8 61 5-65 1-61 (62)
9 1nk2_P Homeobox protein VND; h 99.8 5.8E-21 2E-25 110.0 8.2 65 3-67 5-69 (77)
10 2djn_A Homeobox protein DLX-5; 99.8 2E-21 7E-26 110.0 6.0 64 2-65 2-65 (70)
11 2dms_A Homeobox protein OTX2; 99.8 5.3E-21 1.8E-25 110.8 7.5 64 3-66 3-66 (80)
12 2da1_A Alpha-fetoprotein enhan 99.8 2.6E-21 9E-26 109.4 5.9 63 3-65 3-65 (70)
13 3a01_A Homeodomain-containing 99.8 2.8E-21 9.6E-26 115.0 6.0 66 4-69 14-79 (93)
14 1b8i_A Ultrabithorax, protein 99.8 2E-21 6.8E-26 112.9 5.1 65 2-66 15-79 (81)
15 2l7z_A Homeobox protein HOX-A1 99.8 6.6E-21 2.3E-25 108.7 7.2 66 1-66 1-66 (73)
16 2hdd_A Protein (engrailed home 99.8 3.6E-21 1.2E-25 106.3 5.8 58 7-64 3-60 (61)
17 2m0c_A Homeobox protein arista 99.8 5.7E-21 1.9E-25 109.2 6.9 64 2-65 4-67 (75)
18 1ig7_A Homeotic protein MSX-1; 99.8 7.5E-21 2.6E-25 103.9 6.7 57 8-64 1-57 (58)
19 1puf_A HOX-1.7, homeobox prote 99.8 1.4E-20 4.7E-25 108.4 8.1 64 4-67 10-73 (77)
20 2dmt_A Homeobox protein BARH-l 99.8 6.7E-21 2.3E-25 110.4 6.6 61 5-65 15-75 (80)
21 1zq3_P PRD-4, homeotic bicoid 99.8 1E-20 3.5E-25 106.6 7.0 61 7-67 2-62 (68)
22 1fjl_A Paired protein; DNA-bin 99.8 1.6E-20 5.5E-25 109.0 7.7 64 4-67 15-78 (81)
23 1yz8_P Pituitary homeobox 2; D 99.8 3.4E-21 1.2E-25 108.5 4.3 62 5-66 1-62 (68)
24 1jgg_A Segmentation protein EV 99.8 1E-20 3.5E-25 104.1 6.0 58 8-65 2-59 (60)
25 2kt0_A Nanog, homeobox protein 99.8 1.4E-20 4.6E-25 109.9 6.5 62 4-65 19-80 (84)
26 1ftt_A TTF-1 HD, thyroid trans 99.8 2E-20 6.7E-25 105.4 6.9 60 7-66 2-61 (68)
27 2da3_A Alpha-fetoprotein enhan 99.8 1E-20 3.4E-25 109.5 5.8 62 4-65 14-75 (80)
28 2da4_A Hypothetical protein DK 99.8 8.6E-21 3E-25 109.9 5.4 64 2-65 3-70 (80)
29 1bw5_A ISL-1HD, insulin gene e 99.8 1E-20 3.6E-25 105.9 5.6 60 6-65 2-61 (66)
30 1ahd_P Antennapedia protein mu 99.8 1.2E-20 4E-25 106.4 5.8 60 7-66 2-61 (68)
31 3rkq_A Homeobox protein NKX-2. 99.8 1.7E-20 5.6E-25 102.3 6.1 57 7-63 2-58 (58)
32 1wh5_A ZF-HD homeobox family p 99.8 1.3E-20 4.6E-25 109.3 5.7 60 5-64 15-78 (80)
33 2r5y_A Homeotic protein sex co 99.8 1.9E-20 6.4E-25 110.3 5.8 62 4-65 25-86 (88)
34 1akh_A Protein (mating-type pr 99.8 2.2E-20 7.4E-25 103.0 5.1 59 5-63 3-61 (61)
35 3a02_A Homeobox protein arista 99.8 2.4E-20 8.4E-25 102.6 5.3 57 10-66 2-58 (60)
36 1wh7_A ZF-HD homeobox family p 99.8 1.9E-20 6.3E-25 108.7 4.8 60 4-64 14-78 (80)
37 2k40_A Homeobox expressed in E 99.8 3.9E-20 1.3E-24 103.8 6.0 59 8-66 2-60 (67)
38 2cuf_A FLJ21616 protein; homeo 99.8 9E-20 3.1E-24 108.7 7.1 65 3-67 3-82 (95)
39 3a03_A T-cell leukemia homeobo 99.8 6.7E-20 2.3E-24 99.6 6.0 54 12-65 2-55 (56)
40 1b72_B Protein (PBX1); homeodo 99.8 2.4E-20 8.4E-25 109.4 4.2 62 8-69 2-66 (87)
41 2hi3_A Homeodomain-only protei 99.8 1.5E-19 5.2E-24 103.0 7.2 59 8-66 3-62 (73)
42 1uhs_A HOP, homeodomain only p 99.8 1.2E-19 4.2E-24 103.1 6.8 59 8-66 2-61 (72)
43 1x2n_A Homeobox protein pknox1 99.8 2E-19 6.7E-24 102.5 7.5 63 3-65 3-68 (73)
44 1b72_A Protein (homeobox prote 99.8 9.5E-20 3.3E-24 109.0 6.4 62 5-66 32-93 (97)
45 2da6_A Hepatocyte nuclear fact 99.8 2.8E-19 9.5E-24 107.6 8.0 65 2-66 1-86 (102)
46 2ecc_A Homeobox and leucine zi 99.8 2.4E-19 8.1E-24 102.9 7.1 57 9-65 5-61 (76)
47 2da5_A Zinc fingers and homeob 99.8 2.7E-19 9.4E-24 102.5 7.2 60 7-66 7-66 (75)
48 3nar_A ZHX1, zinc fingers and 99.8 1.1E-19 3.9E-24 108.5 5.8 63 4-66 22-84 (96)
49 2ly9_A Zinc fingers and homeob 99.8 2E-19 6.7E-24 102.7 6.2 61 6-66 5-65 (74)
50 2dn0_A Zinc fingers and homeob 99.8 1.5E-19 5.1E-24 103.8 5.7 61 5-65 6-66 (76)
51 1wi3_A DNA-binding protein SAT 99.8 3.1E-19 1.1E-23 99.7 6.5 60 2-61 2-62 (71)
52 1puf_B PRE-B-cell leukemia tra 99.8 4.1E-19 1.4E-23 101.1 6.5 61 7-67 1-64 (73)
53 2dmn_A Homeobox protein TGIF2L 99.8 7.6E-19 2.6E-23 102.4 7.8 63 3-65 3-68 (83)
54 1du6_A PBX1, homeobox protein 99.8 1.5E-19 5.1E-24 100.5 4.5 59 6-64 2-63 (64)
55 1au7_A Protein PIT-1, GHF-1; c 99.8 2.7E-19 9.4E-24 114.1 5.6 64 2-65 82-145 (146)
56 1k61_A Mating-type protein alp 99.8 8.3E-19 2.8E-23 96.4 5.9 55 11-65 2-59 (60)
57 3d1n_I POU domain, class 6, tr 99.8 1E-18 3.6E-23 111.8 6.6 61 4-64 90-150 (151)
58 1mnm_C Protein (MAT alpha-2 tr 99.8 8.7E-19 3E-23 102.9 5.7 59 5-63 25-86 (87)
59 2xsd_C POU domain, class 3, tr 99.8 6.7E-19 2.3E-23 114.2 5.1 63 4-66 96-158 (164)
60 1e3o_C Octamer-binding transcr 99.8 9.6E-19 3.3E-23 113.0 5.6 61 5-65 99-159 (160)
61 1le8_B Mating-type protein alp 99.7 2E-18 6.9E-23 100.6 5.9 59 7-65 2-63 (83)
62 2cqx_A LAG1 longevity assuranc 99.7 7.1E-19 2.4E-23 100.1 3.8 59 7-65 8-67 (72)
63 3nau_A Zinc fingers and homeob 99.7 2.4E-18 8.2E-23 95.9 5.7 53 14-66 11-63 (66)
64 1lfb_A Liver transcription fac 99.7 1.6E-18 5.5E-23 104.1 4.5 64 3-66 5-89 (99)
65 1x2m_A LAG1 longevity assuranc 99.7 3.2E-18 1.1E-22 95.2 5.1 50 16-65 9-59 (64)
66 2ecb_A Zinc fingers and homeob 99.7 5.1E-18 1.7E-22 100.1 6.2 54 12-65 16-69 (89)
67 3l1p_A POU domain, class 5, tr 99.7 2.7E-18 9.2E-23 110.4 5.3 61 5-65 94-154 (155)
68 2l9r_A Homeobox protein NKX-3. 99.7 7.5E-18 2.6E-22 95.1 5.9 57 9-65 6-62 (69)
69 2dmp_A Zinc fingers and homeob 99.7 1E-17 3.5E-22 98.8 6.4 55 11-65 17-71 (89)
70 2e19_A Transcription factor 8; 99.7 1.4E-17 4.8E-22 92.7 5.3 54 11-64 7-60 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 9.1E-18 3.1E-22 108.6 4.9 61 5-65 95-155 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 1.5E-16 5.2E-21 89.2 5.3 55 12-66 3-60 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 6.2E-16 2.1E-20 102.5 2.4 60 5-64 113-193 (194)
74 2da7_A Zinc finger homeobox pr 99.5 2.5E-14 8.5E-19 80.2 6.9 46 16-61 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.5 4.4E-14 1.5E-18 83.0 6.4 56 11-66 9-67 (89)
76 2h8r_A Hepatocyte nuclear fact 99.5 1.9E-14 6.5E-19 96.7 5.1 58 5-62 140-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.9E-13 6.6E-18 97.4 4.2 54 10-63 368-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 1.7E-09 5.8E-14 53.5 0.3 20 49-68 1-20 (37)
79 2ys9_A Homeobox and leucine zi 97.2 0.00029 9.8E-09 39.1 3.3 56 3-58 2-57 (70)
80 2glo_A Brinker CG9653-PA; prot 90.5 0.4 1.4E-05 24.7 3.7 45 11-56 3-47 (59)
81 1hlv_A CENP-B, major centromer 88.2 1.6 5.4E-05 25.7 5.6 48 10-60 4-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 87.9 1.5 5.3E-05 24.3 5.1 44 8-56 17-60 (87)
83 3hug_A RNA polymerase sigma fa 83.8 2.9 0.0001 23.2 4.9 48 13-65 37-84 (92)
84 1tc3_C Protein (TC3 transposas 81.5 2.9 0.0001 19.5 4.1 40 13-57 5-44 (51)
85 2jn6_A Protein CGL2762, transp 81.0 2.8 9.5E-05 23.4 4.1 43 11-57 3-46 (97)
86 2o8x_A Probable RNA polymerase 79.0 3 0.0001 21.5 3.6 47 13-64 15-61 (70)
87 2x7l_M HIV REV; nuclear export 77.9 3.5 0.00012 24.6 3.9 41 21-75 17-57 (115)
88 1iuf_A Centromere ABP1 protein 77.1 6.4 0.00022 23.8 5.2 51 8-58 6-60 (144)
89 1jko_C HIN recombinase, DNA-in 76.9 3 0.0001 19.8 3.1 40 14-58 6-45 (52)
90 1s7o_A Hypothetical UPF0122 pr 74.6 9 0.00031 22.3 5.2 48 13-65 22-69 (113)
91 1ku3_A Sigma factor SIGA; heli 73.9 6 0.00021 20.8 4.0 50 13-63 10-59 (73)
92 3mzy_A RNA polymerase sigma-H 72.9 7.9 0.00027 22.8 4.8 46 13-64 109-154 (164)
93 3lph_A Protein REV; helix-loop 72.4 4.2 0.00014 22.3 3.0 40 20-73 19-58 (72)
94 2rn7_A IS629 ORFA; helix, all 71.4 8.1 0.00028 21.8 4.4 46 11-56 4-52 (108)
95 2p7v_B Sigma-70, RNA polymeras 71.3 5.8 0.0002 20.5 3.5 50 13-63 5-54 (68)
96 1xsv_A Hypothetical UPF0122 pr 68.6 13 0.00046 21.5 5.0 48 13-65 25-72 (113)
97 1tty_A Sigma-A, RNA polymerase 67.8 6.8 0.00023 21.4 3.4 51 13-64 18-68 (87)
98 2rgt_A Fusion of LIM/homeobox 67.2 0.052 1.8E-06 34.3 -6.3 30 5-34 134-163 (169)
99 3kz9_A SMCR; transcriptional r 66.3 5.7 0.00019 24.0 3.2 41 21-62 25-65 (206)
100 3c57_A Two component transcrip 63.4 16 0.00054 20.3 4.5 45 13-63 27-71 (95)
101 1or7_A Sigma-24, RNA polymeras 62.3 12 0.00042 22.8 4.2 28 37-64 159-186 (194)
102 1rp3_A RNA polymerase sigma fa 62.2 12 0.0004 23.6 4.2 46 14-64 188-233 (239)
103 1je8_A Nitrate/nitrite respons 61.8 14 0.00048 19.9 3.9 47 12-64 20-66 (82)
104 1p4w_A RCSB; solution structur 61.6 20 0.00068 20.3 5.0 45 11-61 32-76 (99)
105 2q24_A Putative TETR family tr 60.8 5 0.00017 24.4 2.1 43 19-63 21-63 (194)
106 1fse_A GERE; helix-turn-helix 59.0 17 0.00057 18.6 4.3 46 11-62 9-54 (74)
107 1x3u_A Transcriptional regulat 58.6 13 0.00046 19.4 3.4 45 14-64 17-61 (79)
108 2qwt_A Transcriptional regulat 58.4 7.2 0.00025 23.8 2.6 41 21-63 21-61 (196)
109 2k27_A Paired box protein PAX- 58.3 26 0.00089 21.0 5.1 41 12-57 24-64 (159)
110 1u78_A TC3 transposase, transp 57.8 17 0.00059 21.0 4.1 41 12-57 5-45 (141)
111 2v57_A TETR family transcripti 57.4 3.3 0.00011 25.0 0.8 37 24-63 25-61 (190)
112 2x48_A CAG38821; archeal virus 56.7 15 0.0005 17.9 3.2 36 16-56 18-53 (55)
113 3bru_A Regulatory protein, TET 54.4 8.9 0.0003 23.6 2.5 41 21-62 38-78 (222)
114 2hin_A GP39, repressor protein 54.0 12 0.0004 20.2 2.6 22 37-58 13-34 (71)
115 1pdn_C Protein (PRD paired); p 53.2 21 0.00071 20.0 3.9 41 12-57 16-56 (128)
116 2rnj_A Response regulator prot 50.0 14 0.00049 20.2 2.7 46 12-63 28-73 (91)
117 3bd1_A CRO protein; transcript 49.2 8.4 0.00029 20.4 1.6 23 37-59 14-36 (79)
118 2qtq_A Transcriptional regulat 48.7 12 0.00043 22.6 2.5 44 19-63 22-65 (213)
119 3ulq_B Transcriptional regulat 48.5 29 0.001 19.1 3.9 45 11-61 27-71 (90)
120 2jpc_A SSRB; DNA binding prote 48.3 11 0.00039 18.6 1.9 26 38-63 17-42 (61)
121 2hxo_A Putative TETR-family tr 48.2 23 0.00079 22.7 3.9 52 10-62 12-64 (237)
122 2xi8_A Putative transcription 47.5 9.6 0.00033 18.9 1.6 23 37-59 17-39 (66)
123 2kvr_A Ubiquitin carboxyl-term 47.1 7.6 0.00026 23.5 1.3 23 36-58 71-93 (130)
124 1fi6_A EH domain protein REPS1 46.3 27 0.00092 18.9 3.5 44 13-56 2-50 (92)
125 2rek_A Putative TETR-family tr 46.2 7.1 0.00024 23.8 1.1 42 20-63 23-64 (199)
126 1rzs_A Antirepressor, regulato 46.2 8.6 0.00029 19.7 1.2 19 37-55 13-31 (61)
127 1k78_A Paired box protein PAX5 46.1 30 0.001 20.4 3.9 41 12-57 31-71 (149)
128 2r1j_L Repressor protein C2; p 45.8 11 0.00037 18.8 1.6 24 37-60 21-44 (68)
129 3jsj_A Putative TETR-family tr 45.5 12 0.0004 22.5 2.0 44 19-64 15-58 (190)
130 3ccy_A Putative TETR-family tr 43.9 22 0.00075 21.6 3.1 43 19-62 20-62 (203)
131 2qko_A Possible transcriptiona 43.8 26 0.00089 21.4 3.5 41 21-62 36-76 (215)
132 1zug_A Phage 434 CRO protein; 43.6 12 0.0004 18.9 1.5 24 37-60 19-42 (71)
133 3gzi_A Transcriptional regulat 43.4 18 0.0006 22.1 2.6 41 22-63 26-66 (218)
134 3bs3_A Putative DNA-binding pr 43.3 12 0.00043 19.1 1.7 23 37-59 26-48 (76)
135 3omt_A Uncharacterized protein 43.1 13 0.00046 19.0 1.8 23 37-59 24-46 (73)
136 3c2b_A Transcriptional regulat 42.6 6.7 0.00023 24.2 0.5 41 20-61 22-62 (221)
137 1j9i_A GPNU1 DBD;, terminase s 42.3 15 0.00052 19.0 1.9 23 37-59 5-27 (68)
138 2jml_A DNA binding domain/tran 42.1 11 0.00039 20.3 1.4 20 37-56 8-27 (81)
139 3i5g_B Myosin regulatory light 41.9 53 0.0018 19.4 5.4 40 10-49 6-50 (153)
140 1c07_A Protein (epidermal grow 41.5 36 0.0012 18.5 3.5 44 13-56 3-51 (95)
141 3v6g_A Probable transcriptiona 40.8 16 0.00055 22.7 2.1 42 20-62 21-62 (208)
142 2pmy_A RAS and EF-hand domain- 40.6 24 0.00083 18.8 2.7 45 12-56 19-68 (91)
143 3ppb_A Putative TETR family tr 40.5 18 0.00062 21.4 2.3 43 19-62 15-57 (195)
144 2q1z_A RPOE, ECF SIGE; ECF sig 40.0 7.6 0.00026 23.6 0.5 24 40-63 157-180 (184)
145 1adr_A P22 C2 repressor; trans 40.0 15 0.0005 18.8 1.6 24 37-60 21-44 (76)
146 2qib_A TETR-family transcripti 40.0 6.5 0.00022 24.8 0.1 41 20-61 20-60 (231)
147 1r69_A Repressor protein CI; g 39.7 15 0.00051 18.3 1.6 24 37-60 17-40 (69)
148 3he0_A Transcriptional regulat 39.7 17 0.0006 21.6 2.1 44 18-62 16-59 (196)
149 2i10_A Putative TETR transcrip 39.5 26 0.0009 21.3 3.0 43 19-62 17-59 (202)
150 1t33_A Putative transcriptiona 39.5 11 0.00038 23.2 1.2 41 22-64 21-61 (224)
151 2zcx_A SCO7815, TETR-family tr 39.4 25 0.00084 22.2 2.9 43 21-64 31-73 (231)
152 2b5a_A C.BCLI; helix-turn-heli 38.9 16 0.00054 18.7 1.6 23 37-59 26-48 (77)
153 3b7h_A Prophage LP1 protein 11 37.9 17 0.00059 18.6 1.7 23 37-59 23-45 (78)
154 2xdn_A HTH-type transcriptiona 37.9 22 0.00076 21.7 2.4 40 22-62 20-59 (210)
155 3qbm_A TETR transcriptional re 36.7 20 0.00067 21.4 2.0 41 21-62 15-55 (199)
156 2iu5_A DHAS, YCEG, HTH-type dh 36.6 22 0.00075 21.4 2.2 44 19-63 19-62 (195)
157 1y7y_A C.AHDI; helix-turn-heli 36.4 18 0.00063 18.3 1.6 23 37-59 29-51 (74)
158 2fq4_A Transcriptional regulat 36.2 21 0.00073 21.5 2.1 39 22-61 21-59 (192)
159 3vpr_A Transcriptional regulat 36.1 23 0.00077 21.2 2.2 42 20-62 10-51 (190)
160 3cwr_A Transcriptional regulat 36.0 8.3 0.00028 23.3 0.2 36 24-60 28-63 (208)
161 2q0o_A Probable transcriptiona 35.9 62 0.0021 20.7 4.5 46 11-62 173-218 (236)
162 3him_A Probable transcriptiona 35.8 31 0.0011 20.6 2.9 42 20-62 23-64 (211)
163 2hyt_A TETR-family transcripti 35.6 27 0.00094 21.1 2.6 42 20-62 19-60 (197)
164 2kpj_A SOS-response transcript 35.5 19 0.00064 19.6 1.6 24 37-60 25-48 (94)
165 2zcm_A Biofilm operon icaabcd 35.5 25 0.00085 21.0 2.4 43 19-62 13-55 (192)
166 3bqz_B HTH-type transcriptiona 35.4 25 0.00085 20.9 2.3 43 20-63 9-51 (194)
167 2fd5_A Transcriptional regulat 34.9 32 0.0011 20.3 2.8 41 21-62 15-55 (180)
168 3vib_A MTRR; helix-turn-helix 34.6 23 0.00077 21.6 2.1 39 22-61 19-57 (210)
169 3dcf_A Transcriptional regulat 34.6 29 0.00099 20.9 2.6 42 20-62 38-79 (218)
170 2rae_A Transcriptional regulat 34.5 29 0.001 20.9 2.6 43 19-62 23-65 (207)
171 2wui_A MEXZ, transcriptional r 34.5 29 0.00098 21.2 2.6 37 23-60 21-57 (210)
172 4dyq_A Gene 1 protein; GP1, oc 34.4 63 0.0022 19.2 4.1 46 7-57 6-52 (140)
173 2hku_A A putative transcriptio 34.3 19 0.00066 22.0 1.7 39 23-63 30-68 (215)
174 2a6c_A Helix-turn-helix motif; 34.2 23 0.00077 18.8 1.8 23 37-59 34-56 (83)
175 3qkx_A Uncharacterized HTH-typ 34.1 31 0.0011 20.2 2.6 42 20-62 15-56 (188)
176 3clo_A Transcriptional regulat 34.1 64 0.0022 21.0 4.3 47 12-64 196-242 (258)
177 1sgm_A Putative HTH-type trans 33.9 31 0.001 20.3 2.6 43 19-62 12-55 (191)
178 2wiu_B HTH-type transcriptiona 33.7 26 0.00088 18.4 2.0 23 37-59 28-50 (88)
179 2yve_A Transcriptional regulat 33.4 32 0.0011 20.6 2.6 44 19-63 10-53 (185)
180 3fmy_A HTH-type transcriptiona 33.4 26 0.0009 18.1 2.0 42 12-60 9-50 (73)
181 3aqt_A Bacterial regulatory pr 33.2 22 0.00074 22.5 1.9 42 21-63 54-95 (245)
182 2ict_A Antitoxin HIGA; helix-t 32.9 21 0.00071 19.3 1.6 23 37-59 24-46 (94)
183 3rd3_A Probable transcriptiona 32.9 23 0.00079 21.0 1.9 43 19-62 16-58 (197)
184 3lwj_A Putative TETR-family tr 32.6 26 0.00089 21.0 2.1 41 21-62 20-60 (202)
185 3kkc_A TETR family transcripti 32.6 25 0.00085 20.6 2.0 40 21-61 20-59 (177)
186 3bni_A Putative TETR-family tr 32.4 26 0.0009 21.8 2.1 40 23-63 53-92 (229)
187 2oi8_A Putative regulatory pro 32.3 29 0.00099 21.6 2.3 40 22-62 25-64 (216)
188 2lhi_A Calmodulin, serine/thre 32.2 55 0.0019 19.8 3.6 38 11-48 2-44 (176)
189 1l3l_A Transcriptional activat 32.1 81 0.0028 20.1 4.5 46 11-62 171-216 (234)
190 4hku_A LMO2814 protein, TETR t 32.1 30 0.001 20.7 2.3 40 21-61 15-54 (178)
191 3anp_C Transcriptional repress 32.0 27 0.00091 21.2 2.1 41 21-62 17-57 (204)
192 3b81_A Transcriptional regulat 31.7 26 0.0009 20.9 2.0 42 21-63 19-60 (203)
193 3knw_A Putative transcriptiona 31.3 28 0.00097 20.9 2.1 41 21-62 22-62 (212)
194 2lfw_A PHYR sigma-like domain; 31.2 23 0.00079 21.2 1.7 45 14-63 94-138 (157)
195 3crj_A Transcription regulator 31.1 27 0.00091 21.3 2.0 40 22-62 23-62 (199)
196 2ef8_A C.ECOT38IS, putative tr 30.8 26 0.00087 18.2 1.7 23 37-59 26-48 (84)
197 2eh3_A Transcriptional regulat 30.7 30 0.001 20.5 2.1 41 21-62 10-50 (179)
198 1r8d_A Transcription activator 30.7 24 0.00083 20.1 1.6 20 37-56 5-24 (109)
199 2v79_A DNA replication protein 30.6 69 0.0024 19.1 3.8 41 14-57 30-74 (135)
200 2lv7_A Calcium-binding protein 30.6 72 0.0025 17.6 5.0 46 11-56 27-79 (100)
201 3dew_A Transcriptional regulat 30.5 24 0.00083 21.0 1.7 39 21-60 16-54 (206)
202 3loc_A HTH-type transcriptiona 30.5 23 0.00079 21.3 1.6 34 26-60 31-64 (212)
203 3on2_A Probable transcriptiona 30.5 18 0.00062 21.5 1.1 44 19-63 18-61 (199)
204 2ras_A Transcriptional regulat 30.4 26 0.00089 21.3 1.8 39 23-62 21-59 (212)
205 2k9q_A Uncharacterized protein 30.3 24 0.00083 18.2 1.5 23 37-59 18-40 (77)
206 3f1b_A TETR-like transcription 30.3 31 0.0011 20.5 2.2 41 21-62 22-62 (203)
207 3cdl_A Transcriptional regulat 30.3 30 0.001 21.0 2.1 39 23-62 19-57 (203)
208 3vp5_A Transcriptional regulat 30.3 39 0.0013 20.3 2.6 41 21-62 20-60 (189)
209 3mvp_A TETR/ACRR transcription 30.3 21 0.00073 21.6 1.4 41 23-64 36-76 (217)
210 1pb6_A Hypothetical transcript 30.0 32 0.0011 20.7 2.2 39 23-62 28-66 (212)
211 3pas_A TETR family transcripti 30.0 24 0.00081 20.9 1.6 29 36-64 30-58 (195)
212 1rkt_A Protein YFIR; transcrip 30.0 28 0.00096 21.1 1.9 40 23-63 22-61 (205)
213 2d6y_A Putative TETR family re 29.9 32 0.0011 20.9 2.2 43 19-62 14-56 (202)
214 2w53_A Repressor, SMet; antibi 29.9 29 0.00098 21.3 2.0 43 19-62 17-59 (219)
215 2vz4_A Tipal, HTH-type transcr 29.8 26 0.00089 19.9 1.6 20 37-56 4-23 (108)
216 3f6w_A XRE-family like protein 29.6 27 0.00092 18.2 1.6 23 37-59 30-52 (83)
217 2o7t_A Transcriptional regulat 29.5 26 0.00088 21.1 1.7 42 21-63 16-57 (199)
218 1vi0_A Transcriptional regulat 29.4 20 0.00068 22.0 1.2 43 20-63 15-57 (206)
219 4aci_A HTH-type transcriptiona 29.1 27 0.00093 20.7 1.8 38 24-62 25-62 (191)
220 3qqa_A CMER; alpha-helical, he 29.0 33 0.0011 20.7 2.1 40 22-62 28-67 (216)
221 2jj7_A Hemolysin II regulatory 28.7 28 0.00094 20.6 1.7 26 36-61 29-54 (186)
222 3lhq_A Acrab operon repressor 28.6 33 0.0011 20.6 2.1 41 21-62 22-62 (220)
223 2f07_A YVDT; helix-turn-helix, 28.5 32 0.0011 20.8 2.0 42 19-61 16-57 (197)
224 3c07_A Putative TETR-family tr 28.4 39 0.0013 22.0 2.5 42 21-63 49-90 (273)
225 3nrg_A TETR family transcripti 28.3 34 0.0012 20.6 2.1 40 22-62 22-61 (217)
226 8tfv_A Protein (thanatin); bac 28.3 10 0.00035 15.3 -0.2 13 48-60 3-15 (21)
227 2dg7_A Putative transcriptiona 28.2 29 0.001 20.7 1.8 42 19-61 13-54 (195)
228 1lmb_3 Protein (lambda repress 28.2 29 0.00099 18.5 1.6 23 37-59 33-55 (92)
229 2ibd_A Possible transcriptiona 28.1 35 0.0012 20.7 2.1 40 23-63 24-63 (204)
230 3f0c_A TETR-molecule A, transc 28.0 34 0.0012 20.7 2.1 43 19-62 17-59 (216)
231 2nx4_A Transcriptional regulat 27.9 35 0.0012 20.5 2.1 39 23-62 20-58 (194)
232 3g7r_A Putative transcriptiona 27.9 36 0.0012 21.0 2.2 39 24-63 46-84 (221)
233 3on4_A Transcriptional regulat 27.7 28 0.00097 20.5 1.6 43 21-64 18-60 (191)
234 1etf_B REV peptide; complex (R 27.7 33 0.0011 14.9 1.4 16 56-71 7-22 (26)
235 1l0o_C Sigma factor; bergerat 27.7 13 0.00043 23.4 0.0 23 35-57 215-237 (243)
236 2pij_A Prophage PFL 6 CRO; tra 27.6 31 0.001 17.2 1.6 22 37-58 16-37 (67)
237 3dpj_A Transcription regulator 27.5 37 0.0013 20.2 2.1 42 22-64 17-58 (194)
238 3g1o_A Transcriptional regulat 27.1 37 0.0013 21.5 2.2 43 21-64 51-93 (255)
239 3nxc_A HTH-type protein SLMA; 27.0 29 0.00098 20.9 1.6 36 26-62 38-73 (212)
240 3col_A Putative transcription 26.9 28 0.00095 20.6 1.5 42 20-62 17-58 (196)
241 2of7_A Putative TETR-family tr 26.8 35 0.0012 21.8 2.1 41 21-62 56-96 (260)
242 1ui5_A A-factor receptor homol 26.6 38 0.0013 20.9 2.1 43 19-62 15-57 (215)
243 3s8q_A R-M controller protein; 26.4 33 0.0011 17.8 1.6 23 37-59 27-49 (82)
244 3bjb_A Probable transcriptiona 26.2 32 0.0011 21.1 1.7 42 20-62 29-70 (207)
245 3e7q_A Transcriptional regulat 26.2 31 0.0011 20.7 1.6 29 36-64 36-64 (215)
246 3geu_A Intercellular adhesion 26.2 30 0.001 20.5 1.5 27 36-62 25-51 (189)
247 2np5_A Transcriptional regulat 26.1 31 0.0011 21.0 1.6 43 19-62 15-57 (203)
248 2gfn_A HTH-type transcriptiona 25.9 32 0.0011 21.1 1.7 39 23-62 19-57 (209)
249 2l49_A C protein; P2 bacteriop 25.9 35 0.0012 18.4 1.7 24 37-60 20-43 (99)
250 3egq_A TETR family transcripti 25.8 32 0.0011 20.1 1.6 39 23-62 14-52 (170)
251 2g7s_A Transcriptional regulat 25.7 33 0.0011 20.2 1.7 39 23-62 18-56 (194)
252 2dg8_A Putative TETR-family tr 25.7 35 0.0012 20.4 1.8 44 19-63 15-58 (193)
253 3lsj_A DEST; transcriptional r 25.4 38 0.0013 20.6 2.0 41 21-62 19-60 (220)
254 3i9v_2 NADH-quinone oxidoreduc 25.3 86 0.003 19.8 3.6 35 18-52 27-61 (181)
255 3eup_A Transcriptional regulat 25.3 30 0.001 20.6 1.5 28 36-63 33-60 (204)
256 2iai_A Putative transcriptiona 25.1 37 0.0013 21.1 1.9 43 19-62 36-78 (230)
257 1irz_A ARR10-B; helix-turn-hel 25.0 84 0.0029 16.6 4.9 58 7-64 3-62 (64)
258 3mnl_A KSTR, transcriptional r 24.9 34 0.0012 20.4 1.6 27 36-62 42-68 (203)
259 3bhq_A Transcriptional regulat 24.9 45 0.0015 20.2 2.2 41 22-63 21-61 (211)
260 2oer_A Probable transcriptiona 24.8 34 0.0012 21.0 1.6 43 19-62 27-72 (214)
261 1q06_A Transcriptional regulat 24.6 36 0.0012 20.2 1.6 20 37-56 3-22 (135)
262 1zk8_A Transcriptional regulat 24.5 31 0.0011 20.3 1.4 44 19-63 14-57 (183)
263 2gen_A Probable transcriptiona 24.5 48 0.0016 20.0 2.3 42 20-62 14-55 (197)
264 3ljl_A Transcriptional regulat 24.5 36 0.0012 19.9 1.6 37 23-60 24-60 (156)
265 3qq6_A HTH-type transcriptiona 24.2 38 0.0013 17.7 1.6 21 37-57 26-46 (78)
266 2jrt_A Uncharacterized protein 24.0 1E+02 0.0036 17.3 4.0 44 10-57 29-72 (95)
267 2ppx_A AGR_C_3184P, uncharacte 24.0 39 0.0013 18.5 1.7 24 37-60 46-69 (99)
268 3gp4_A Transcriptional regulat 24.0 36 0.0012 20.5 1.6 20 37-56 5-24 (142)
269 3q0w_A HTH-type transcriptiona 24.0 36 0.0012 21.2 1.7 42 22-64 53-94 (236)
270 1x57_A Endothelial differentia 24.0 36 0.0012 18.2 1.5 23 37-59 29-51 (91)
271 3hh0_A Transcriptional regulat 24.0 37 0.0013 20.6 1.6 20 37-56 7-26 (146)
272 2g3b_A Putative TETR-family tr 23.8 38 0.0013 20.8 1.7 26 37-62 26-51 (208)
273 2hyj_A Putative TETR-family tr 23.7 35 0.0012 20.7 1.5 39 23-62 22-60 (200)
274 2id6_A Transcriptional regulat 23.6 44 0.0015 20.2 2.0 39 24-63 16-54 (202)
275 2zb9_A Putative transcriptiona 23.5 38 0.0013 20.6 1.7 39 23-62 33-71 (214)
276 1l9z_H Sigma factor SIGA; heli 23.4 1.9E+02 0.0064 20.9 5.5 49 14-63 376-424 (438)
277 3s5r_A Transcriptional regulat 23.2 44 0.0015 20.1 1.9 42 19-61 16-57 (216)
278 3frq_A Repressor protein MPHR( 23.1 41 0.0014 20.1 1.8 41 21-62 16-56 (195)
279 2g7l_A TETR-family transcripti 22.8 72 0.0025 20.4 3.0 47 13-60 18-65 (243)
280 2g7g_A RHA04620, putative tran 22.8 39 0.0013 21.1 1.7 39 20-61 18-56 (213)
281 2ofy_A Putative XRE-family tra 22.8 42 0.0014 17.6 1.6 23 37-59 30-52 (86)
282 3gpv_A Transcriptional regulat 22.6 43 0.0015 20.2 1.8 21 37-57 19-39 (148)
283 3t72_q RNA polymerase sigma fa 22.5 1.1E+02 0.0038 17.1 5.1 51 13-64 19-69 (99)
284 3osg_A MYB21; transcription-DN 22.5 1.2E+02 0.0042 17.6 4.0 50 4-57 4-54 (126)
285 3lsg_A Two-component response 22.5 49 0.0017 18.1 1.9 24 35-58 20-43 (103)
286 3qp6_A CVIR transcriptional re 22.5 1.4E+02 0.0049 19.5 4.5 46 12-63 196-241 (265)
287 2xpw_A Tetracycline repressor 22.4 40 0.0014 21.0 1.6 27 36-62 25-51 (207)
288 2ao9_A Phage protein; structur 22.2 63 0.0022 20.1 2.5 46 12-57 22-71 (155)
289 3op9_A PLI0006 protein; struct 22.1 41 0.0014 18.8 1.5 23 37-59 25-47 (114)
290 2guh_A Putative TETR-family tr 21.8 45 0.0015 20.6 1.8 39 22-61 48-86 (214)
291 3i5g_C Myosin catalytic light 21.8 98 0.0033 18.3 3.3 36 13-48 2-44 (159)
292 2pz9_A Putative regulatory pro 21.8 43 0.0015 20.7 1.7 42 20-62 37-78 (226)
293 3szt_A QCSR, quorum-sensing co 21.7 1.6E+02 0.0053 18.8 4.5 44 12-61 174-217 (237)
294 3rh2_A Hypothetical TETR-like 21.3 44 0.0015 20.2 1.6 40 21-61 11-50 (212)
295 2cw1_A SN4M; lambda CRO fold, 21.2 45 0.0015 17.4 1.4 22 36-57 15-36 (65)
296 3eus_A DNA-binding protein; st 21.2 52 0.0018 17.5 1.8 23 37-59 30-52 (86)
297 1neq_A DNA-binding protein NER 20.9 50 0.0017 17.5 1.6 21 37-57 25-45 (74)
298 2np3_A Putative TETR-family re 20.9 31 0.0011 21.0 0.8 43 19-62 36-78 (212)
299 1uxc_A FRUR (1-57), fructose r 20.9 50 0.0017 17.1 1.6 23 37-59 3-25 (65)
300 3npi_A TETR family regulatory 20.8 48 0.0016 20.8 1.8 41 21-62 26-66 (251)
301 3o48_A Mitochondria fission 1 20.8 1.5E+02 0.0052 17.9 4.0 34 11-44 15-50 (134)
302 2y2z_A SIM16, SIMR, putative r 20.8 83 0.0028 20.6 3.0 49 13-62 26-75 (267)
303 3bqy_A Putative TETR family tr 20.7 44 0.0015 20.8 1.6 37 24-61 13-49 (209)
304 2hxi_A Putative transcriptiona 20.6 49 0.0017 21.2 1.8 49 13-62 28-77 (241)
305 2opo_A Polcalcin CHE A 3; calc 20.3 1E+02 0.0034 15.7 3.1 43 13-55 4-52 (86)
306 2eby_A Putative HTH-type trans 20.1 50 0.0017 18.3 1.6 23 37-59 27-49 (113)
307 2zhg_A Redox-sensitive transcr 20.1 48 0.0016 20.2 1.6 19 37-55 14-32 (154)
308 3o9x_A Uncharacterized HTH-typ 20.0 56 0.0019 18.8 1.9 24 37-60 87-110 (133)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.3e-21 Score=113.44 Aligned_cols=67 Identities=34% Similarity=0.556 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 68 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~~ 68 (96)
++++..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+....
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 4566788899999999999999999999999999999999999999999999999999999996543
No 2
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=110.42 Aligned_cols=65 Identities=29% Similarity=0.497 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
++++..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 s~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 2 SSGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CSTTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34566788999999999999999999999999999999999999999999999999999999853
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1.2e-21 Score=110.99 Aligned_cols=63 Identities=43% Similarity=0.716 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+.+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 456678889999999999999999999999999999999999999999999999999999985
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.85 E-value=1.7e-21 Score=108.29 Aligned_cols=60 Identities=65% Similarity=0.950 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 6 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 6 ~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 478889999999999999999999999999999999999999999999999999999985
No 5
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=110.31 Aligned_cols=64 Identities=31% Similarity=0.486 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
++.+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+.
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 3466788899999999999999999999999999999999999999999999999999999874
No 6
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=3.4e-21 Score=109.09 Aligned_cols=65 Identities=40% Similarity=0.667 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
++++..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 s~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 2 SSGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34566788899999999999999999999999999999999999999999999999999999853
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=111.32 Aligned_cols=65 Identities=25% Similarity=0.466 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
++.+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 2 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 2 SSGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999854
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.85 E-value=9.2e-22 Score=109.00 Aligned_cols=61 Identities=33% Similarity=0.599 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
|+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4578899999999999999999999999999999999999999999999999999999984
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.85 E-value=5.8e-21 Score=109.96 Aligned_cols=65 Identities=38% Similarity=0.620 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 67 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~ 67 (96)
...++++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 34566778999999999999999999999999999999999999999999999999999998543
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=109.98 Aligned_cols=64 Identities=39% Similarity=0.700 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
++++..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3466778899999999999999999999999999999999999999999999999999999874
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.3e-21 Score=110.82 Aligned_cols=64 Identities=34% Similarity=0.501 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
+.++.++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 4566788899999999999999999999999999999999999999999999999999999853
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=109.44 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+.+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 456678899999999999999999999999999999999999999999999999999999884
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=2.8e-21 Score=114.98 Aligned_cols=66 Identities=39% Similarity=0.678 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI 69 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~~~ 69 (96)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 456778899999999999999999999999999999999999999999999999999999965443
No 14
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.84 E-value=2e-21 Score=112.93 Aligned_cols=65 Identities=97% Similarity=1.427 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
|+.+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 15 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 15 GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ---------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34567788999999999999999999999999999999999999999999999999999999853
No 15
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.84 E-value=6.6e-21 Score=108.73 Aligned_cols=66 Identities=44% Similarity=0.671 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 1 MGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 1 ~~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
|+.....++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 1 ~s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 1 MSHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCSSSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 345567788999999999999999999999999999999999999999999999999999999853
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.84 E-value=3.6e-21 Score=106.25 Aligned_cols=58 Identities=47% Similarity=0.811 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 17
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=5.7e-21 Score=109.22 Aligned_cols=64 Identities=44% Similarity=0.697 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+.+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999874
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=7.5e-21 Score=103.92 Aligned_cols=57 Identities=47% Similarity=0.792 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 8 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.84 E-value=1.4e-20 Score=108.36 Aligned_cols=64 Identities=63% Similarity=0.847 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 67 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~ 67 (96)
.+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3556788999999999999999999999999999999999999999999999999999999654
No 20
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=110.39 Aligned_cols=61 Identities=44% Similarity=0.742 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+.++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+.
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999999874
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1e-20 Score=106.57 Aligned_cols=61 Identities=41% Similarity=0.638 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 67 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~ 67 (96)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 6788999999999999999999999999999999999999999999999999999998653
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.83 E-value=1.6e-20 Score=108.98 Aligned_cols=64 Identities=39% Similarity=0.615 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 67 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~ 67 (96)
.++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3456788999999999999999999999999999999999999999999999999999999653
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.83 E-value=3.4e-21 Score=108.52 Aligned_cols=62 Identities=39% Similarity=0.602 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
|..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999854
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1e-20 Score=104.11 Aligned_cols=58 Identities=53% Similarity=0.794 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 8 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999884
No 25
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=109.89 Aligned_cols=62 Identities=31% Similarity=0.523 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999874
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=2e-20 Score=105.40 Aligned_cols=60 Identities=40% Similarity=0.720 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 578899999999999999999999999999999999999999999999999999999854
No 27
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=109.46 Aligned_cols=62 Identities=29% Similarity=0.384 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
....++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 34567789999999999999999999999999999999999999999999999999999985
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.6e-21 Score=109.90 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTN----HYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~----~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+..++.++.|+.|+..|+.+|+..|..+ +||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 3456678889999999999999999999 999999999999999999999999999999999984
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=1e-20 Score=105.90 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 6 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 6 ~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 367889999999999999999999999999999999999999999999999999999874
No 30
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.82 E-value=1.2e-20 Score=106.36 Aligned_cols=60 Identities=88% Similarity=1.285 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 578899999999999999999999999999999999999999999999999999999853
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=102.34 Aligned_cols=57 Identities=46% Similarity=0.737 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 578899999999999999999999999999999999999999999999999999875
No 32
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=1.3e-20 Score=109.27 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~----~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
+.+++.|+.|+..|+..|+..|.. ++||+..++..||..|||++.+|++||||||+|+++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 357888999999999999999999 999999999999999999999999999999999875
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.82 E-value=1.9e-20 Score=110.27 Aligned_cols=62 Identities=82% Similarity=1.213 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45678899999999999999999999999999999999999999999999999999999984
No 34
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.81 E-value=2.2e-20 Score=103.02 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999875
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.81 E-value=2.4e-20 Score=102.59 Aligned_cols=57 Identities=44% Similarity=0.670 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 10 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 10 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
+|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 589999999999999999999999999999999999999999999999999999864
No 36
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1.9e-20 Score=108.69 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+.++|.|+.|+..|+..|+ .|.. ++||+..++..||..|||++.+|+|||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45568889999999999999 7999 999999999999999999999999999999999875
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=103.80 Aligned_cols=59 Identities=41% Similarity=0.562 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 8 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 67899999999999999999999999999999999999999999999999999998853
No 38
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=9e-20 Score=108.73 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC---------------CCcchhhhhhchhhhhhHHHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALC---------------LTERQIKIWFQNRRMKLKKEIQ 67 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~---------------l~~~~V~~WFqnrR~k~kr~~~ 67 (96)
+.++.++.|+.|+..|+.+|+..|..++||+..++..||..|+ |++.+|++||+|||+++|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4566788999999999999999999999999999999999999 9999999999999999998643
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.80 E-value=6.7e-20 Score=99.62 Aligned_cols=54 Identities=43% Similarity=0.777 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
|.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999984
No 40
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.80 E-value=2.4e-20 Score=109.44 Aligned_cols=62 Identities=31% Similarity=0.525 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHHHH
Q psy1653 8 RRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI 69 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F---~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~~~ 69 (96)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|.++|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999965443
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.5e-19 Score=103.02 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 8 RRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F~~-~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 466899999999999999995 99999999999999999999999999999999999854
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.2e-19 Score=103.13 Aligned_cols=59 Identities=27% Similarity=0.308 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 8 RRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F~~-~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356899999999999999996 99999999999999999999999999999999999854
No 43
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=2e-19 Score=102.48 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+.+..++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++++.
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 34567888999999999999999987 9999999999999999999999999999999999885
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=9.5e-20 Score=108.99 Aligned_cols=62 Identities=56% Similarity=0.802 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||||||+++|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 45678899999999999999999999999999999999999999999999999999999854
No 45
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=107.60 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc---------------------CCCcchhhhhhchhhh
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL---------------------CLTERQIKIWFQNRRM 60 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l---------------------~l~~~~V~~WFqnrR~ 60 (96)
|+.+..++.|+.|++.|+.+|+..|..++||+..+++.||..| +|++.+|++||+|||+
T Consensus 1 ~~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 1 GSSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp CTTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 5677889999999999999999999999999999999999999 7899999999999999
Q ss_pred hhHHHH
Q psy1653 61 KLKKEI 66 (96)
Q Consensus 61 k~kr~~ 66 (96)
++++..
T Consensus 81 k~kr~~ 86 (102)
T 2da6_A 81 EEAFRQ 86 (102)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998853
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.4e-19 Score=102.86 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 9 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 9 r~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
..|..|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|+|.++|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 346679999999999999999999999999999999999999999999999999884
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=102.48 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
..+.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 345677899999999999999999999999999999999999999999999999999853
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=108.51 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
.+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|+.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 344567899999999999999999999999999999999999999999999999999999864
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=102.66 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 6 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 6 ~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3567899999999999999999999999999999999999999999999999999999853
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=103.77 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
......|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 3455679999999999999999999999999999999999999999999999999999884
No 51
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=3.1e-19 Score=99.70 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~-~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
|+.+.++|.||.|+.+|+.+|+..|.. ++||+...++.|+.++||++.+|++||||+|--
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 456778999999999999999999999 999999999999999999999999999999853
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.78 E-value=4.1e-19 Score=101.14 Aligned_cols=61 Identities=31% Similarity=0.528 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 67 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F---~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~ 67 (96)
.++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|.++++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 36789999999999999999 89999999999999999999999999999999999998543
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=102.44 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
++..+++.|+.|+..++.+|+.+|.. ++||+..++..||..+||++.+|.+||+|+|.|+++.
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 45567788999999999999999987 6999999999999999999999999999999999874
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1.5e-19 Score=100.54 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 6 LRRRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 6 ~~rr~r~~~s~~q~~~L~~~F---~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
..++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357789999999999999999 89999999999999999999999999999999999876
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.77 E-value=2.7e-19 Score=114.06 Aligned_cols=64 Identities=30% Similarity=0.479 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 2 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 2 ~~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
|..+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3445678889999999999999999999999999999999999999999999999999999874
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=8.3e-19 Score=96.37 Aligned_cols=55 Identities=31% Similarity=0.389 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 11 RQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 679999999999999999 9999999999999999999999999999999999863
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=111.81 Aligned_cols=61 Identities=30% Similarity=0.477 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567788999999999999999999999999999999999999999999999999999986
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.76 E-value=8.7e-19 Score=102.89 Aligned_cols=59 Identities=29% Similarity=0.366 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+.+++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456777999999999999999999 99999999999999999999999999999999987
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.75 E-value=6.7e-19 Score=114.17 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
.+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 456788899999999999999999999999999999999999999999999999999999854
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.75 E-value=9.6e-19 Score=112.97 Aligned_cols=61 Identities=31% Similarity=0.458 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4578889999999999999999999999999999999999999999999999999999874
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.75 E-value=2e-18 Score=100.57 Aligned_cols=59 Identities=27% Similarity=0.337 Sum_probs=53.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+++.+++|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 3455677999999999999999 9999999999999999999999999999999999985
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=7.1e-19 Score=100.11 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEF-HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F-~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
..+.+..++..|+..|+..| ..++||+...+..||..+||++.+|++||||||+++|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34567778889999999999 999999999999999999999999999999999999863
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=95.92 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 14 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
-+..|+..|+..|..++||+..++.+||..+||++.+|++||+|||.++|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 46899999999999999999999999999999999999999999999999854
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.74 E-value=1.6e-18 Score=104.09 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------------------cC---CCcchhhhhhchhhhh
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA------------------LC---LTERQIKIWFQNRRMK 61 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~------------------l~---l~~~~V~~WFqnrR~k 61 (96)
...+.++.|+.|+..|+.+|+..|..++||+...+++||.. || |++.+|++||+|||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34567888999999999999999999999999999999999 88 9999999999999999
Q ss_pred hHHHH
Q psy1653 62 LKKEI 66 (96)
Q Consensus 62 ~kr~~ 66 (96)
+++..
T Consensus 85 ~k~k~ 89 (99)
T 1lfb_A 85 EAFRH 89 (99)
T ss_dssp TSCCC
T ss_pred HHHhc
Confidence 87743
No 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=3.2e-18 Score=95.24 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH-HhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 16 RYQTLELEKEF-HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 16 ~~q~~~L~~~F-~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+.++..|+..| ..+.||+...+..||..|||++.+|++||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34799999999 568999999999999999999999999999999999863
No 66
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.1e-18 Score=100.09 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
..|+..|+..|+..|..++||+..++..||..|||++.+|++||||||+++++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 389999999999999999999999999999999999999999999999999873
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.73 E-value=2.7e-18 Score=110.38 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4577889999999999999999999999999999999999999999999999999999974
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=95.14 Aligned_cols=57 Identities=42% Similarity=0.702 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 9 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 9 r~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
..-..++..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+.
T Consensus 6 ~~~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 6 HHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CSCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 344578999999999999999999999999999999999999999999999999874
No 69
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=98.79 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
+..|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+++.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 4459999999999999999999999999999999999999999999999999874
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=92.74 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
+..+...|+..|+..|..++||+..++..||..+||++.+|++||+|||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 445678999999999999999999999999999999999999999999998765
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.70 E-value=9.1e-18 Score=108.59 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+.++.|+.|+..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+.
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 3568889999999999999999999999999999999999999999999999999999874
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.5e-16 Score=89.22 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 12 QTYTRYQTLELEKEFH---TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~---~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
..|+..++.+|+..|. .++||+..++..||..+||++.+|++||+|+|.|+++..
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 3789999999999999 999999999999999999999999999999999998853
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.57 E-value=6.2e-16 Score=102.53 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC---------------------CCcchhhhhhchhhhhhH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALC---------------------LTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WFqnrR~k~k 63 (96)
.+.+|.|+.|+..|+..|+..|..++||+...++.||..|+ |++.+|++||+|||++++
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 45678899999999999999999999999999999999999 999999999999999876
Q ss_pred H
Q psy1653 64 K 64 (96)
Q Consensus 64 r 64 (96)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 3
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=80.25 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 16 RYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 16 ~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
..|+..|+.+|..+++|+..++..||..+||+.++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999963
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=83.01 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHH
Q psy1653 11 RQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 66 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~ 66 (96)
-..|+..+..+|..+|.. ++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 457899999999999987 99999999999999999999999999999999998753
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=96.74 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC---------------------CCcchhhhhhchhhhhh
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALC---------------------LTERQIKIWFQNRRMKL 62 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WFqnrR~k~ 62 (96)
.+.+|.|+.|++.|+.+|+..|..++||+..+++.||..|| |++.+|++||+|||.+.
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 35678899999999999999999999999999999999987 88999999999999764
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.39 E-value=1.9e-13 Score=97.35 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=51.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 10 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 10 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
-++.++..++..|+..|..++||+..++.+||..+||+++||++||+|||.|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 366799999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=1.7e-09 Score=53.53 Aligned_cols=20 Identities=75% Similarity=1.157 Sum_probs=17.3
Q ss_pred chhhhhhchhhhhhHHHHHH
Q psy1653 49 RQIKIWFQNRRMKLKKEIQA 68 (96)
Q Consensus 49 ~~V~~WFqnrR~k~kr~~~~ 68 (96)
+||+|||||||+|+|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999996554
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00029 Score=39.14 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchh
Q psy1653 3 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 58 (96)
Q Consensus 3 ~~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnr 58 (96)
+.|.....-...++.-.+.|..+|..-..+.......|+.+.+|+..+|+.||-.|
T Consensus 2 ~~~~~pp~l~~~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 2 SSGSSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCSSCCCCCCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 34444555556666778999999999999999999999999999999999999644
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=90.46 E-value=0.4 Score=24.74 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhc
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFq 56 (96)
+..|+.++...+...+... .+.......+|..+||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578888876664444433 22112256889999999999999975
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.15 E-value=1.6 Score=25.70 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 10 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 10 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
.|..|+.++...+...+..++.+.. ..+|..+||+...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 4778999998888777765655543 35788999999999999976544
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=87.85 E-value=1.5 Score=24.28 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhc
Q psy1653 8 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFq 56 (96)
++.+..|+.++.......+.. .. ....+|..+||+...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 345668898886655556643 32 255779999999999999984
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=83.80 E-value=2.9 Score=23.16 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.++..+..+|.-.|..+. ...++|..+|++...|+.+...-+.+.++.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 356666667766554332 356789999999999999887555555543
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=81.54 E-value=2.9 Score=19.54 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
.++..+...+...+... . ....+|..+|++...|..|+..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46676665555555433 2 2557899999999999999853
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=80.96 E-value=2.8 Score=23.43 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 11 RQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~-~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
|..|+..+.......+... .. ....+|..+||+...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888776665555432 22 3567899999999999999853
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.95 E-value=3 Score=21.47 Aligned_cols=47 Identities=15% Similarity=-0.070 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+++.+..+|.-.|..+. ...++|..+|++...|+.+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888888877664332 35678999999999999988755544443
No 87
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=77.92 E-value=3.5 Score=24.62 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHHHHHHHHHH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQ 75 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~~~~~~~~~ 75 (96)
++.-.|+.|+||.+. |-. .=-.|||.+|+..+..+....+-
T Consensus 17 iIkiLyQSNPyP~pe---------GTR-----qaRRNRRRRWR~RQrQI~~iseR 57 (115)
T 2x7l_M 17 LIKFLYQSNPPPNPE---------GTR-----QARRNRRRRWRERQRQIHSISER 57 (115)
T ss_dssp HHHHHHHSSCCCCCC---------CCT-----TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCC---------Cch-----hhhHhHHHHHHHHHHHHHHHHHH
Confidence 444458899998764 111 11258999999988777665543
No 88
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=77.09 E-value=6.4 Score=23.85 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHH-HHc--CCCcchhhhhhchh
Q psy1653 8 RRGRQTYTRYQTLELEKEF-HTNHYLTRRRRIEMA-HAL--CLTERQIKIWFQNR 58 (96)
Q Consensus 8 rr~r~~~s~~q~~~L~~~F-~~~~~p~~~~~~~la-~~l--~l~~~~V~~WFqnr 58 (96)
++.|..+|..|...+...+ ..++..+..+....+ ..+ +++...|..|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6778999999999999999 677777666555532 356 77888898888654
No 89
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=76.90 E-value=3 Score=19.85 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchh
Q psy1653 14 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 58 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnr 58 (96)
++..+...+...+... . ....+|..+|++...|..|+...
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4455555554555433 2 35678999999999999999643
No 90
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=74.62 E-value=9 Score=22.35 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+++.+..++.-.|..+. ...++|..+|++...|+.+...-+.+.+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467788888877765443 356789999999999999998766666553
No 91
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=73.86 E-value=6 Score=20.78 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.+++.+..+|.-.|-.... ......++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5788888899888752110 0113457899999999999998865554444
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=72.89 E-value=7.9 Score=22.82 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+++.+..+|. .|-.+. ...++|..+|++...|+.+...-+.+.++
T Consensus 109 ~L~~~~r~v~~-~~~~g~-----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGY-----SYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTTTC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35556666666 333222 45678999999999999988755555444
No 93
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=72.43 E-value=4.2 Score=22.30 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHHHHHHHHHH
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELN 73 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~~~~~~~~~ 73 (96)
.++.-.|+.||||++.-... =-.|||.+|+..+..+....
T Consensus 19 RiIkiLyQSNP~P~p~GTrq--------------aRRNRRRRWR~RQrQI~~is 58 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQIHSIS 58 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 34455588999987542111 12488999988776665544
No 94
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=71.38 E-value=8.1 Score=21.81 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHhCC--CCC-HHHHHHHHHHcCCCcchhhhhhc
Q psy1653 11 RQTYTRYQTLELEKEFHTNH--YLT-RRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~--~p~-~~~~~~la~~l~l~~~~V~~WFq 56 (96)
+..|+.++.......+.... +++ ......+|..+||+...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 44688887765555443221 222 23567789999999999999985
No 95
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=71.34 E-value=5.8 Score=20.52 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.+++.+..+|.-.|-.+.+-. ....++|..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 477888888888873211111 13467899999999999998765444443
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=68.57 E-value=13 Score=21.49 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 65 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr~ 65 (96)
.+++.+..+|.-.|..+. ...++|..+|++...|+.+...-+.+.+..
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 466777777766654333 356789999999999999987666666554
No 97
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=67.78 E-value=6.8 Score=21.44 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+++.+..+|.-.|-.... ......++|..+|++...|+.+...-+.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4677888888887752100 01135677999999999999988655555443
No 98
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.16 E-value=0.052 Score=34.26 Aligned_cols=30 Identities=7% Similarity=-0.026 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCH
Q psy1653 5 GLRRRGRQTYTRYQTLELEKEFHTNHYLTR 34 (96)
Q Consensus 5 ~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~ 34 (96)
.+.++.|+.|+..|+..|+..|+.+++|+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 346788999999999999999999998864
No 99
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=66.33 E-value=5.7 Score=24.02 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-... ...||...||+...|..+|.++-.=.
T Consensus 25 aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK~~L~ 65 (206)
T 3kz9_A 25 IALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTREDLV 65 (206)
T ss_dssp HHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 333447777765433 55679999999999999999875443
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=63.36 E-value=16 Score=20.31 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.++..+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.+.+
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 578888888877532 22 2467899999999999998875555544
No 101
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=62.34 E-value=12 Score=22.82 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
..++|..+|++...|+.+...-+.+.++
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999988755555544
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=62.24 E-value=12 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 14 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
+++.+..+|.-.|..+. ...++|..+|++...|+.+...-+.+.++
T Consensus 188 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEEL-----PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCC-----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45555566655553322 45678899999999999888755555544
No 103
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=61.82 E-value=14 Score=19.93 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
..++..+..+|.-.+ ..+ ...++|..+|++...|+.+..+-+.+.+.
T Consensus 20 ~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 458888888887743 222 35678999999999999988755555443
No 104
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=61.60 E-value=20 Score=20.33 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
...+++.+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45689999999877543 22 24778999999999999988644443
No 105
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=60.76 E-value=5 Score=24.41 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+..-...|....| . .....||...|++...|..+|.++-.=..
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 4444555888887 5 67888999999999999999988754443
No 106
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=59.02 E-value=17 Score=18.62 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
-..+++.+..+|.-.+ ..+ ...++|..+|++...|..++..-+.+.
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4568888999887742 222 346789999999999998887544444
No 107
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.55 E-value=13 Score=19.38 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 14 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
+++.+..+|.-.+ ..+ ...++|..+|++...|+.+...-+.+.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5666777776632 222 34578999999999999888755555543
No 108
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=58.41 E-value=7.2 Score=23.85 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.-...|....| . .....||...|++...|..+|.++-.=..
T Consensus 21 aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~ 61 (196)
T 2qwt_A 21 VAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQALVV 61 (196)
T ss_dssp HHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 33445778887 5 57888999999999999999998754443
No 109
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=58.29 E-value=26 Score=21.01 Aligned_cols=41 Identities=7% Similarity=0.098 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
..++..+...+...+... . ....+|..+|++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 467887776666666533 2 2456788999999999999864
No 110
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=57.77 E-value=17 Score=20.98 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
..++..+...+...+..+ . ....+|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457777776666666533 2 2456788999999999999964
No 111
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=57.43 E-value=3.3 Score=25.03 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=27.8
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 24 KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 24 ~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
..|... .......||...|++...+..+|.++-.=..
T Consensus 25 ~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 61 (190)
T 2v57_A 25 LVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLLR 61 (190)
T ss_dssp HHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 335544 5566778899999999999999988754443
No 112
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=56.69 E-value=15 Score=17.90 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhc
Q psy1653 16 RYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 16 ~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFq 56 (96)
..+...+...+..+ . ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555554444432 2 355789999999999999874
No 113
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=54.45 E-value=8.9 Score=23.58 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 38 aA~~l~~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sK~~L~ 78 (222)
T 3bru_A 38 AGLEHLTEKGYSSV-GVDEILKAARVPKGSFYHYFRNKADFG 78 (222)
T ss_dssp HHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcCCCcC-cHHHHHHHhCCCcchhhhhCCCHHHHH
Confidence 33444777776433 356679999999999999998875443
No 114
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=53.95 E-value=12 Score=20.22 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcchhhhhhchh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNR 58 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnr 58 (96)
...||..|||+..-|..|..+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998653
No 115
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=53.19 E-value=21 Score=20.02 Aligned_cols=41 Identities=5% Similarity=0.028 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
..++..+...+...+. ..+. ...+|..+|++...|..|+..
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s----~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIR----PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC----HHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCC----HHHHHHHHCcCHHHHHHHHHH
Confidence 3577777666666665 3332 356799999999999999864
No 116
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=50.03 E-value=14 Score=20.18 Aligned_cols=46 Identities=24% Similarity=0.155 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
..+++.+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.+.+
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3577888888877432 22 2346789999999999998875555544
No 117
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=49.15 E-value=8.4 Score=20.35 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46789999999999999997665
No 118
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=48.71 E-value=12 Score=22.59 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+......|....|-... ...||...|++...+..+|.++-.=..
T Consensus 22 l~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 65 (213)
T 2qtq_A 22 LQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAGLLK 65 (213)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHHHHH
Confidence 33444557777764433 556799999999999999998754443
No 119
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=48.48 E-value=29 Score=19.11 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
...++..+..+|.-.+ ..+ ...++|..||++...|+....+=..|
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4468888888887765 222 35678999999999999877644333
No 120
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=48.25 E-value=11 Score=18.63 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 38 IEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 38 ~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.++|..+|++...|+.+..+=+.+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 57899999999999988875554443
No 121
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=48.24 E-value=23 Score=22.71 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=32.9
Q ss_pred CCCCCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 10 GRQTYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 10 ~r~~~s~~q-~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.+...+... +......|....|-... ...||..+|++...+...|.|+-.=.
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGLT-FRALAERLATGPGAIYWHITGKAELL 64 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTCC-HHHHHHHHTSCGGGGGGTCCCHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHHCCChHHHHHhcCCHHHHH
Confidence 344455543 34445557777765433 55679999999999999998865433
No 122
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=47.48 E-value=9.6 Score=18.87 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999997654
No 123
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=47.06 E-value=7.6 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCcchhhhhhchh
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNR 58 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnr 58 (96)
....++..+|++..+++.|+-..
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~ 93 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQA 93 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCC
T ss_pred HHHHHHHHhCCCcccEEEEEeec
Confidence 46678999999999999998533
No 124
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=46.31 E-value=27 Score=18.87 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCCcchhhhhhc
Q psy1653 13 TYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WFq 56 (96)
.++..+...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888889888863 4467778888777788888777666553
No 125
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=46.19 E-value=7.1 Score=23.75 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
......|....| . .....||...||+...+..+|.++-.=..
T Consensus 23 ~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 64 (199)
T 2rek_A 23 EAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLLQ 64 (199)
T ss_dssp HHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHHH
Confidence 334445777788 5 57888999999999999999988755443
No 126
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.16 E-value=8.6 Score=19.68 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCcchhhhhh
Q psy1653 37 RIEMAHALCLTERQIKIWF 55 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WF 55 (96)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4678999999999999998
No 127
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=46.14 E-value=30 Score=20.41 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
..++.++...+...+. ... ....+|..+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4578877666666664 332 2456789999999999999863
No 128
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=45.75 E-value=11 Score=18.81 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 466899999999999999976543
No 129
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=45.46 E-value=12 Score=22.47 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
+..-...|....|- .....||...|++...|..+|.++-.=..-
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~ 58 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLAA 58 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 34444557777766 567788999999999999999877554433
No 130
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=43.94 E-value=22 Score=21.56 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-... ...||...|++...+..+|.++-.=.
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe~L~ 62 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKEAVL 62 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHHHHH
Confidence 33444557777775443 56679999999999999998774433
No 131
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=43.78 E-value=26 Score=21.41 Aligned_cols=41 Identities=5% Similarity=-0.075 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...||+...+..+|.++-.=.
T Consensus 36 aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 36 AAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 33444777776443 456779999999999999998875433
No 132
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=43.62 E-value=12 Score=18.90 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 466899999999999999987654
No 133
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=43.36 E-value=18 Score=22.08 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
....|....|-.. ....||...||+...|..+|.++-.=..
T Consensus 26 A~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 66 (218)
T 3gzi_A 26 ARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKLFS 66 (218)
T ss_dssp HHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHHHH
T ss_pred HHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3344777776544 3556799999999999999987755443
No 134
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=43.28 E-value=12 Score=19.11 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998655
No 135
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=43.13 E-value=13 Score=19.04 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999997763
No 136
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=42.64 E-value=6.7 Score=24.20 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
......|....|-.. ....||...||+...|..+|.++-.=
T Consensus 22 ~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sKe~L 62 (221)
T 3c2b_A 22 DQALRLLVEGGEKAL-TTSGLARAANCSKESLYKWFGDRDGL 62 (221)
T ss_dssp HHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHHH
Confidence 333444666665432 35667999999999999999887433
No 137
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=42.28 E-value=15 Score=19.02 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=18.3
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
..++|..|||+...|..|..+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 35678899999999999986543
No 138
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=42.07 E-value=11 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCcchhhhhhc
Q psy1653 37 RIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFq 56 (96)
+.++|..+||+...++.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45678899999999999965
No 139
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=41.85 E-value=53 Score=19.41 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCCcc
Q psy1653 10 GRQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTER 49 (96)
Q Consensus 10 ~r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~ 49 (96)
.+..+|..|+..|...|.. +.+.+..+...+...+|+.+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999963 567888888888888886543
No 140
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=41.46 E-value=36 Score=18.50 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCCcchhhhhhc
Q psy1653 13 TYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WFq 56 (96)
.++..+...|...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3567788888888853 4567888888877788888777766653
No 141
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=40.82 E-value=16 Score=22.72 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..-...|....|-... ...|+...||+...|..+|.++-.=.
T Consensus 21 ~AA~~lf~~~G~~~~s-~~~IA~~AGvs~~tlY~~F~sKe~L~ 62 (208)
T 3v6g_A 21 EAAERVIARQGLGGLS-HRRVAAEANVPVGSTTYYFNDLDALR 62 (208)
T ss_dssp HHHHHHHHHHCTTCCC-HHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 3344457777764433 55678999999999999998765433
No 142
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=40.56 E-value=24 Score=18.81 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCCcchhhhhhc
Q psy1653 12 QTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WFq 56 (96)
..++..+...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34667778888888853 4577888888888888988777777764
No 143
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=40.52 E-value=18 Score=21.42 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-... ...||...|++...+..+|.++-.=.
T Consensus 15 l~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK~~L~ 57 (195)
T 3ppb_A 15 LETALQLFVSQGFHGTS-TATIAREAGVATGTLFHHFPSKEQLL 57 (195)
T ss_dssp HHHHHHHHHHTCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCcccCC-HHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 34444557777764433 66779999999999999999875443
No 144
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=40.01 E-value=7.6 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=16.2
Q ss_pred HHHHcCCCcchhhhhhchhhhhhH
Q psy1653 40 MAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 40 la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+|..+|++...|+.+...-+.+.+
T Consensus 157 IA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 157 LAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp STTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHH
Confidence 455667888888888865554444
No 145
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=40.00 E-value=15 Score=18.77 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457899999999999999976543
No 146
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=39.98 E-value=6.5 Score=24.82 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
......|....|-. .....||...||+...+..+|.++-.=
T Consensus 20 ~AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 20 GVALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLSL 60 (231)
T ss_dssp HHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 33444577777633 345667999999999999999877443
No 147
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=39.72 E-value=15 Score=18.34 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999977654
No 148
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=39.66 E-value=17 Score=21.63 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 18 QTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 18 q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
-+......|....|-.. ....||...|++...+...|.++-.=.
T Consensus 16 il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (196)
T 3he0_A 16 ILAAAEQLIAESGFQGL-SMQKLANEAGVAAGTIYRYFSDKEHLL 59 (196)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCCcchHHHhcCCHHHHH
Confidence 34455556777776443 356679999999999999998775443
No 149
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.51 E-value=26 Score=21.34 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+..-...|....|-... ...||...|++...+..+|.++-.=.
T Consensus 17 l~aA~~lF~~~Gy~~ts-~~~IA~~aGvsk~tlY~~F~sKe~L~ 59 (202)
T 2i10_A 17 LQTAMELFWRQGYEGTS-ITDLTKALGINPPSLYAAFGSKRDLF 59 (202)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 44445558777765433 56679999999999999998775443
No 150
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=39.51 E-value=11 Score=23.21 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
....|....|- .....||...|++...|..+|.++-.=..-
T Consensus 21 A~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~~~ 61 (224)
T 1t33_A 21 ALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLYLA 61 (224)
T ss_dssp HHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHHHH
Confidence 33447777666 567788999999999999999987554443
No 151
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=39.44 E-value=25 Score=22.23 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.....|....|-.. ....||...|++...|..+|.++-.=..-
T Consensus 31 aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L~~a 73 (231)
T 2zcx_A 31 AARELGTERGIREI-TLTDIAATVGMHKSALLRYFETREQIFLK 73 (231)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHHHHHH
Confidence 33444777776443 35667999999999999999887554433
No 152
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=38.87 E-value=16 Score=18.74 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45689999999999999997654
No 153
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=37.86 E-value=17 Score=18.62 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999998765
No 154
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=37.85 E-value=22 Score=21.66 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
-...|....|-... ...||...|++...+..+|.++-.=.
T Consensus 20 A~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (210)
T 2xdn_A 20 AERAFYKRGVARTT-LADIAELAGVTRGAIYWHFNNKAELV 59 (210)
T ss_dssp HHHHHHHHCSTTCC-HHHHHHHHTCCTTHHHHHCSSHHHHH
T ss_pred HHHHHHHcCcccCc-HHHHHHHHCCChHHHHHHhCCHHHHH
Confidence 34447777765433 56679999999999999998875443
No 155
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=36.70 E-value=20 Score=21.39 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 15 aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 55 (199)
T 3qbm_A 15 QAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESKEQLA 55 (199)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCHHHHH
Confidence 33444666665433 355679999999999999998775444
No 156
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=36.58 E-value=22 Score=21.45 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+......|...+|-.. ....||...|++...+..+|.++-.=..
T Consensus 19 l~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 62 (195)
T 2iu5_A 19 AKAFKDLMQSNAYHQI-SVSDIMQTAKIRRQTFYNYFQNQEELLS 62 (195)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHHTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhCCCCee-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3344455777765432 3566799999999999999987754443
No 157
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=36.39 E-value=18 Score=18.25 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45689999999999999997654
No 158
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=36.21 E-value=21 Score=21.49 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
....|....|-.. ....||...|++...|..+|.++-.=
T Consensus 21 A~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 21 SYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHHH
Confidence 3344777776443 35667999999999999999877443
No 159
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=36.14 E-value=23 Score=21.24 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|....|-... ...||...|++...+..+|.++-.=.
T Consensus 10 ~aA~~lf~~~G~~~~s-~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 10 EEAAKLFTEKGYEATS-VQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344557777765433 55679999999999999998876544
No 160
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=36.04 E-value=8.3 Score=23.29 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=25.8
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 24 KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 24 ~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
..|....|-.. ....||...|++...+..+|.++-.
T Consensus 28 ~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (208)
T 3cwr_A 28 RLLSSGGAAAM-TMEGVASEAGIAKKTLYRFASGRAD 63 (208)
T ss_dssp HHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHcCHHhc-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33666655332 3566799999999999999987643
No 161
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.95 E-value=62 Score=20.67 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...+++.+..+|.-.+. .+ .-.++|..+|+++..|+....+=+.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 34688888888866432 22 346788999999999999887555444
No 162
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=35.78 E-value=31 Score=20.61 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 23 ~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 64 (211)
T 3him_A 23 AAAIEVFAAKGYGAT-TTREIAASLDMSPGAVYPHYKTKESLL 64 (211)
T ss_dssp HHHHHHHHHHCSTTC-CHHHHHHHTTCCTTSSTTTCSSHHHHH
T ss_pred HHHHHHHHHcCCCcC-CHHHHHHHhCCCcChhhhcCCCHHHHH
Confidence 334444777776433 356679999999999999998775443
No 163
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=35.57 E-value=27 Score=21.06 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..-...|....|-... ...||...|++...+...|.++-.=.
T Consensus 19 ~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tlY~~F~sKe~L~ 60 (197)
T 2hyt_A 19 ATARKVFSERGYADTS-MDDLTAQASLTRGALYHHFGDKKGLL 60 (197)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHTCCTTHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344457777765433 56679999999999999998875444
No 164
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=35.50 E-value=19 Score=19.61 Aligned_cols=24 Identities=13% Similarity=0.495 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 466899999999999999976543
No 165
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=35.50 E-value=25 Score=21.04 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-.. ....||...|++...|..+|.++-.=.
T Consensus 13 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L~ 55 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGT-TLDDISKSVNIKKASLYYHYDNKEEIY 55 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTCCHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 3444555777776443 356679999999999999998875444
No 166
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=35.38 E-value=25 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
......|....|-.. ....||...|++...+...|.++-.=..
T Consensus 9 ~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 51 (194)
T 3bqz_B 9 GVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTKENLFL 51 (194)
T ss_dssp HHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCHHHHHH
Confidence 344455666665433 3566799999999999999987754443
No 167
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=34.85 E-value=32 Score=20.26 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....+|...|++...|...|.++-.=.
T Consensus 15 aA~~l~~~~G~~~~-s~~~IA~~agvs~~tly~~F~sK~~L~ 55 (180)
T 2fd5_A 15 AATQALLERGAVEP-SVGEVMGAAGLTVGGFYAHFQSKDALM 55 (180)
T ss_dssp HHHHHHHHHTTTSC-CHHHHHHHTTCCGGGGGGTCSCHHHHH
T ss_pred HHHHHHHHhCcccC-CHHHHHHHhCCCccHHHHHCCCHHHHH
Confidence 33444666776443 356779999999999999998775444
No 168
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=34.61 E-value=23 Score=21.61 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
-...|....|-... ...||...||+...|..+|.++-.=
T Consensus 19 A~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 19 ALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHHH
Confidence 33457777765443 5567999999999999999887543
No 169
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.57 E-value=29 Score=20.94 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|....|-.. ....||...||+...+..+|.++-.=.
T Consensus 38 ~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~Ll 79 (218)
T 3dcf_A 38 KVATELFREKGYYAT-SLDDIADRIGFTKPAIYYYFKSKEDVL 79 (218)
T ss_dssp HHHHHHHHHTCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHcCcccC-cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 344444777776433 356679999999999999998775443
No 170
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=34.54 E-value=29 Score=20.88 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-.. ....||...||+...+...|.++-.=.
T Consensus 23 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~Ll 65 (207)
T 2rae_A 23 STVGIELFTEQGFDAT-SVDEVAEASGIARRTLFRYFPSKNAIP 65 (207)
T ss_dssp HHHHHHHHHHHCTTTS-CHHHHHHHTTSCHHHHHHHCSSTTTGG
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcchHhhhCCCHHHHH
Confidence 3344444777776443 356679999999999999999875443
No 171
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=34.53 E-value=29 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...|....|-... ...||...||+...|..+|.++-.
T Consensus 21 ~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2wui_A 21 ERVFLEKGVGTTA-MADLADAAGVSRGAVYGHYKNKIE 57 (210)
T ss_dssp HHHHHHSCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHcCccccC-HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4447777765433 556799999999999999987744
No 172
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=34.43 E-value=63 Score=19.22 Aligned_cols=46 Identities=4% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-Ccchhhhhhch
Q psy1653 7 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCL-TERQIKIWFQN 57 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l-~~~~V~~WFqn 57 (96)
+....+.|+.+....+........ ....++...|| +...|..|...
T Consensus 6 k~GRPtk~t~e~~e~I~~~i~~G~-----sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 6 KAGRPSDYMPEVADDICSLLSSGE-----SLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp ----CCSCCTTHHHHHHHHHHTTC-----CHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCC-----cHHHHHhcCCCCCHHHHHHHHHc
Confidence 333456788888777777766544 34556778899 68899999853
No 173
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.33 E-value=19 Score=22.03 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=29.2
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
...|.... .......||...|++...|..+|.++..=..
T Consensus 30 ~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~ 68 (215)
T 2hku_A 30 TELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLFV 68 (215)
T ss_dssp HHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 34466666 4456777899999999999999988755443
No 174
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.17 E-value=23 Score=18.83 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 175
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=34.15 E-value=31 Score=20.23 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|...+|-.. ....||...|++...+...|.++-.=.
T Consensus 15 ~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 56 (188)
T 3qkx_A 15 SATDRLMAREGLNQL-SMLKLAKEANVAAGTIYLYFKNKDELL 56 (188)
T ss_dssp HHHHHHHHHSCSTTC-CHHHHHHHHTCCHHHHHHHSSSHHHHH
T ss_pred HHHHHHHHhcCcccC-CHHHHHHHhCCCcchHHHHcCCHHHHH
Confidence 344445777776443 456679999999999999998765443
No 176
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.09 E-value=64 Score=20.98 Aligned_cols=47 Identities=17% Similarity=0.049 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
..+++.+..+|.-.+ ..+ ...++|..||++...|+....+-+.+.+.
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 357888888887754 222 35678999999999999988766666554
No 177
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.89 E-value=31 Score=20.32 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch-hhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN-RRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn-rR~k~ 62 (96)
+......|....|-... ...||...|++...+...|.| +-.=.
T Consensus 12 l~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~~sK~~L~ 55 (191)
T 1sgm_A 12 LHTASRLSQLQGYHATG-LNQIVKESGAPKGSLYHFFPNGKEELA 55 (191)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHCCCSCHHHHSTTTCHHHHH
T ss_pred HHHHHHHHHHcCccccC-HHHHHHHHCCCchhHHHHccccHHHHH
Confidence 33444556666654333 556799999999999999987 65443
No 178
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=33.73 E-value=26 Score=18.44 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45689999999999999997654
No 179
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=33.41 E-value=32 Score=20.61 Aligned_cols=44 Identities=16% Similarity=0.015 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+......|....|-.. ....|+...|++...+..+|.++-.=..
T Consensus 10 l~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 53 (185)
T 2yve_A 10 LRTAIDYIGEYSLETL-SYDSLAEATGLSKSGLIYHFPSRHALLL 53 (185)
T ss_dssp HHHHHHHHHHSCSTTC-CHHHHHHHHCCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcChhhc-cHHHHHHHhCCChHHHHHhCcCHHHHHH
Confidence 3344455777776433 3566799999999999999987654443
No 180
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=33.40 E-value=26 Score=18.15 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
..++...+..+..... . ....||..+|++...|..|-..++.
T Consensus 9 ~~~~g~~lr~~R~~~g----l---tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcC----C---CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 3577777777765432 2 2467899999999999999987653
No 181
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=33.17 E-value=22 Score=22.54 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.....|....|-.. ....||...||+...|..+|.++-.=..
T Consensus 54 aA~~lf~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 54 SARTLMAERGVDNV-GIAEITEGANIGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHCGGGC-CHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHhcCcccC-cHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 33444666665432 3567799999999999999988755443
No 182
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.92 E-value=21 Score=19.31 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 183
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=32.87 E-value=23 Score=21.02 Aligned_cols=43 Identities=5% Similarity=-0.055 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-... ...||...|++...+..+|.++-.=.
T Consensus 16 l~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~L~ 58 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSKEQFG 58 (197)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCHHHHH
T ss_pred HHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCHHHHH
Confidence 34444557777664433 55679999999999999998775543
No 184
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=32.63 E-value=26 Score=20.97 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 20 aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (202)
T 3lwj_A 20 CSLDLFIEKGYYNT-SIRDIIALSEVGTGTFYNYFVDKEDIL 60 (202)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHHCSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcCcccC-CHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 34444777766433 356679999999999999998765433
No 185
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=32.62 E-value=25 Score=20.61 Aligned_cols=40 Identities=5% Similarity=0.074 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
.....|...+|-.. ....||...|++...+...|.++-.=
T Consensus 20 aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L 59 (177)
T 3kkc_A 20 AFISLLQENDYSKI-TVQDVIGLANVGRSTFYSHYESKEVL 59 (177)
T ss_dssp HHHHHTTTSCTTTC-CHHHHHHHHCCCHHHHTTTCSSTHHH
T ss_pred HHHHHHHhCChhHh-hHHHHHHHhCCcHhhHHHHcCCHHHH
Confidence 34444666665433 35567999999999999999876543
No 186
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=32.37 E-value=26 Score=21.83 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=28.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
...|....|-.. ....||...||+...|..+|.++-.=..
T Consensus 53 ~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~ 92 (229)
T 3bni_A 53 ADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQMAD 92 (229)
T ss_dssp HHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHHHHH
Confidence 344666665443 3566799999999999999988754443
No 187
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.28 E-value=29 Score=21.63 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
....|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 25 A~~l~~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~~K~~L~ 64 (216)
T 2oi8_A 25 AWEQIATAGASAL-SLNAIAKRMGMSGPALYRYFDGRDELI 64 (216)
T ss_dssp HHHHHHHHCTTSC-CHHHHHHHTTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344666666433 355679999999999999998875444
No 188
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.21 E-value=55 Score=19.81 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHcCCCc
Q psy1653 11 RQTYTRYQTLELEKEFH-----TNHYLTRRRRIEMAHALCLTE 48 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~l~~ 48 (96)
.+.+|..|+..|...|. .+.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 46788899999999986 345778888888777777654
No 189
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.07 E-value=81 Score=20.05 Aligned_cols=46 Identities=7% Similarity=-0.060 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 11 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...+++.+..+|.-.+ ..+ .-.++|..||+++..|+....+=+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VGK----TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 3458888888886543 221 356778999999999998877555443
No 190
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=32.05 E-value=30 Score=20.66 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
.-...|....|-.. ....||...||+...|..+|.++-.=
T Consensus 15 aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~sKe~L 54 (178)
T 4hku_A 15 MAEKIIYEKGMEKT-TLYDIASNLNVTHAALYKHYRNKEDL 54 (178)
T ss_dssp HHHHHHHHHCGGGC-CHHHHHHHTTSCGGGGGGTCSSHHHH
T ss_pred HHHHHHHHhCcccc-cHHHHHHHhCcCHhHHHHHCCCHHHH
Confidence 33445666665332 35667999999999999999877543
No 191
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=31.99 E-value=27 Score=21.17 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...||+...+..+|.++-.=.
T Consensus 17 aA~~lf~~~G~~~~-t~~~Ia~~Agvs~gt~Y~yF~sKe~L~ 57 (204)
T 3anp_C 17 AAMELFRNRGFQET-TATEIAKAAHVSRGTFFNYYPYKEAVL 57 (204)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHcCcccc-cHHHHHHHcCCchHHHHHHcCCHHHHH
Confidence 33445777776433 356679999999999999998875443
No 192
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=31.67 E-value=26 Score=20.91 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.....|....|-.. ....||...|++...+..+|.++-.=..
T Consensus 19 aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (203)
T 3b81_A 19 KIWDIFIANGYENT-TLAFIINKLGISKGALYHYFSSKEECAD 60 (203)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHcCcccC-cHHHHHHHhCCCchhHHHHcCCHHHHHH
Confidence 33444666666433 3566799999999999999988754443
No 193
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=31.27 E-value=28 Score=20.94 Aligned_cols=41 Identities=5% Similarity=-0.036 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|...+|-.. ....||...||+...|...|.++-.=.
T Consensus 22 aa~~l~~~~G~~~~-ti~~IA~~agvs~~t~Y~~F~sK~~L~ 62 (212)
T 3knw_A 22 SGFHLVLRKGFVGV-GLQEILKTSGVPKGSFYHYFESKEAFG 62 (212)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcCCccC-CHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 33444666665433 356679999999999999998775543
No 194
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.15 E-value=23 Score=21.19 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 14 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+++.+..+|.-.|-.+ ....++|..+|++...|+.....-+.+.+
T Consensus 94 Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 94 MTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp SCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4555555554433222 24677899999999999998875454444
No 195
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=31.07 E-value=27 Score=21.27 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=29.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
-...|....|-... ...||...|++...|..+|.++-.=.
T Consensus 23 A~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sKe~L~ 62 (199)
T 3crj_A 23 TYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTKDDLL 62 (199)
T ss_dssp HHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCHHHHH
Confidence 34447777765443 55679999999999999998775443
No 196
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=30.85 E-value=26 Score=18.21 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45689999999999999997664
No 197
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=30.75 E-value=30 Score=20.50 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.-...|....|-... ...||...|++...+...|.++-.=.
T Consensus 10 aA~~lf~~~Gy~~~s-~~~Ia~~agvskgtlY~~F~sKe~L~ 50 (179)
T 2eh3_A 10 VSKELFFEKGYQGTS-VEEIVKRANLSKGAFYFHFKSKEELI 50 (179)
T ss_dssp HHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcCCccCC-HHHHHHHhCCCcHHHHHHcCCHHHHH
Confidence 334457777765433 56679999999999999998775443
No 198
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=30.71 E-value=24 Score=20.07 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCcchhhhhhc
Q psy1653 37 RIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFq 56 (96)
+.++|..+|++...++.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34678888999999988854
No 199
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.60 E-value=69 Score=19.10 Aligned_cols=41 Identities=7% Similarity=0.068 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 14 YTRYQTLELEKEFHT----NHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~----~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
++..++.+|...+.. +++|++. .||..+|++...|....++
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~ 74 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRM 74 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHH
Confidence 566666666666552 4567664 6888999999888777654
No 200
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=30.58 E-value=72 Score=17.58 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHcCC--Ccchhhhhhc
Q psy1653 11 RQTYTRYQTLELEKEFH-----TNHYLTRRRRIEMAHALCL--TERQIKIWFQ 56 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~l--~~~~V~~WFq 56 (96)
...++..++..|...|. .+.+.+..+...+...+|+ +...|..+|.
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45688889999999986 3567899998888888875 5566776664
No 201
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=30.50 E-value=24 Score=20.98 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
.....|....|-. .....||...||+...+..+|.++-.
T Consensus 16 aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 54 (206)
T 3dew_A 16 VATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEG 54 (206)
T ss_dssp HHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHH
T ss_pred HHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3344466666532 23556799999999999999987743
No 202
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=30.49 E-value=23 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=24.5
Q ss_pred HHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 26 FHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 26 F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
|....|-. .....||...||+...|..+|.++-.
T Consensus 31 f~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~ 64 (212)
T 3loc_A 31 FSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEA 64 (212)
T ss_dssp HHHHHHHH-CCHHHHHHHHTSCHHHHHHHSSSHHH
T ss_pred HHHhCccc-CCHHHHHHHHCcCHHHHhhhCCCHHH
Confidence 55544321 23567899999999999999998643
No 203
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=30.48 E-value=18 Score=21.51 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+..-...|....|-.. ....||...|++...+..+|.++..=..
T Consensus 18 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 61 (199)
T 3on2_A 18 LARAESTLEKDGVDGL-SLRQLAREAGVSHAAPSKHFRDRQALLD 61 (199)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHTC-----CCCSSSSHHHHHH
T ss_pred HHHHHHHHHhcChhhh-hHHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 3344444666665332 3566799999999999999998754443
No 204
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=30.38 E-value=26 Score=21.28 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-... ...||...|++...|..+|.++-.=.
T Consensus 21 ~~lf~~~G~~~~s-~~~IA~~agvs~~t~Y~~F~sK~~L~ 59 (212)
T 2ras_A 21 QAIVEERGGAGLT-LSELAARAGISQANLSRYFETREDLM 59 (212)
T ss_dssp HHHHHHHTSSCCC-HHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHhCcccCc-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3446666665433 56679999999999999999875443
No 205
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.34 E-value=24 Score=18.23 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45689999999999999997654
No 206
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.33 E-value=31 Score=20.50 Aligned_cols=41 Identities=5% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...||+...+..+|.++-.=.
T Consensus 22 aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 62 (203)
T 3f1b_A 22 AAVDVFSDRGFHET-SMDAIAAKAEISKPMLYLYYGSKDELF 62 (203)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHcCcccc-cHHHHHHHhCCchHHHHHHhCCHHHHH
Confidence 33344666665433 356679999999999999998775443
No 207
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=30.32 E-value=30 Score=20.99 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-... ...||...|++...|..+|.++-.=.
T Consensus 19 ~~lf~~~G~~~~s-~~~IA~~aGvsk~tlY~~F~sKe~L~ 57 (203)
T 3cdl_A 19 IAEFGDRGFEITS-MDRIAARAEVSKRTVYNHFPSKEELF 57 (203)
T ss_dssp HHHHHHHCTTTCC-HHHHHHHTTSCHHHHHTTSSSHHHHH
T ss_pred HHHHHHcCchhcC-HHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 3347777664433 56679999999999999998875443
No 208
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=30.28 E-value=39 Score=20.35 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|...+|-.. ....||..+|++...+...|.++-.=.
T Consensus 20 aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K~~L~ 60 (189)
T 3vp5_A 20 ACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDLKDAY 60 (189)
T ss_dssp HHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 34444777776444 466779999999999999998775443
No 209
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=30.28 E-value=21 Score=21.57 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
...|...+|-. .....||...|++...|...|.++-.=..-
T Consensus 36 ~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 76 (217)
T 3mvp_A 36 KDLFSDKTYFN-VTTNEIAKKADVSVGTLYAYFASKEDILTA 76 (217)
T ss_dssp HHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHcCccc-cCHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 33466666533 235567899999999999999887554433
No 210
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=30.04 E-value=32 Score=20.67 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 28 ~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 66 (212)
T 1pb6_A 28 LDTFSQFGFHGT-RLEQIAELAGVSKTNLLYYFPSKEALY 66 (212)
T ss_dssp HHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHSSSHHHHH
T ss_pred HHHHHHcCcchh-hHHHHHHHHCCChhHHHHhCCCHHHHH
Confidence 334666665433 356779999999999999998875443
No 211
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=30.03 E-value=24 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
....||...|++...+..+|.++-.=..-
T Consensus 30 t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (195)
T 3pas_A 30 SVGKIAKAAGLSPATLYIYYEDKEQLLLA 58 (195)
T ss_dssp CHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred CHHHHHHHhCCCchHHHHHcCCHHHHHHH
Confidence 36678999999999999999987544433
No 212
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.98 E-value=28 Score=21.13 Aligned_cols=40 Identities=5% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
...|....|-... ...||...|++...+..+|.++-.=..
T Consensus 22 ~~lf~~~Gy~~ts-~~~IA~~agvs~gtlY~yF~sKe~L~~ 61 (205)
T 1rkt_A 22 KTVFKRKGFELTT-MKDVVEESGFSRGGVYLYFSSTEEMFR 61 (205)
T ss_dssp HHHHHHHCSTTCC-HHHHHHHHTSCHHHHHTTCSCHHHHHH
T ss_pred HHHHHHcCcccCC-HHHHHHHHCCCcchhhhhCCCHHHHHH
Confidence 3447777764433 566799999999999999987754443
No 213
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.94 E-value=32 Score=20.94 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+..-...|....|-.. ....||...||+...|..+|.++-.=.
T Consensus 14 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tiY~~F~sKe~L~ 56 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGA-RIDRIAAEARANKQLIYAYYGNKGELF 56 (202)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344445777776433 355679999999999999998775443
No 214
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=29.93 E-value=29 Score=21.29 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+..-...|....|-.. ....||...|++...|..+|.|+-.=.
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (219)
T 2w53_A 17 LDAAEACFHEHGVART-TLEMIGARAGYTRGAVYWHFKNKSEVL 59 (219)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchHHhhcCCCHHHHH
Confidence 4444555777776543 356679999999999999998875444
No 215
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.83 E-value=26 Score=19.93 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=15.9
Q ss_pred HHHHHHHcCCCcchhhhhhc
Q psy1653 37 RIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFq 56 (96)
+.++|..+|++...++.|-.
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35678888999999998854
No 216
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.57 E-value=27 Score=18.20 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999997764
No 217
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=29.45 E-value=26 Score=21.14 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.....|....|-.. ....||...||+...+..+|.++-.=..
T Consensus 16 aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L~~ 57 (199)
T 2o7t_A 16 TTCNLYRTHHHDSL-TMENIAEQAGVGVATLYRNFPDRFTLDM 57 (199)
T ss_dssp HHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHCCCccC-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 33444666665432 3566799999999999999988755443
No 218
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.40 E-value=20 Score=22.01 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
......|....|-.. ....||...|++...+..+|.|+-.=..
T Consensus 15 ~aA~~lf~~~Gy~~~-s~~~IA~~AGvs~gt~Y~yF~sKe~L~~ 57 (206)
T 1vi0_A 15 DAAVEVIAENGYHQS-QVSKIAKQAGVADGTIYLYFKNKEDILI 57 (206)
T ss_dssp HHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 344455766665432 3566799999999999999988754443
No 219
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=29.14 E-value=27 Score=20.71 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 24 KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 24 ~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..|....|- ......||...||+...+..+|.++-.=.
T Consensus 25 ~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 62 (191)
T 4aci_A 25 RCFAEHGYE-GATVRRLEEATGKSRGAIFHHFGDKENLF 62 (191)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHhCcc-cCCHHHHHHHHCCCchHHHHHCCCHHHHH
Confidence 335544432 12356789999999999999998775444
No 220
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=28.97 E-value=33 Score=20.70 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=28.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
....|....|-... ...||...||+...|..+|.++-.=.
T Consensus 28 A~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~L~ 67 (216)
T 3qqa_A 28 ALELFLTKGYQETS-LSDIIKLSGGSYSNIYDGFKSKEGLF 67 (216)
T ss_dssp HHHHHHHTCTTTCC-HHHHHHHHTTSCCSSSCSCCSHHHHH
T ss_pred HHHHHHHcChhhCC-HHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 34447676664433 55679999999999999998775443
No 221
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=28.66 E-value=28 Score=20.64 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
....||...|++...+..+|.++-.=
T Consensus 29 t~~~IA~~agvs~~tlY~~F~sK~~L 54 (186)
T 2jj7_A 29 SIQEIAKEAKVNVAMASYYFNGKENL 54 (186)
T ss_dssp CHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred CHHHHHHHhCCChhhhhhhcCCHHHH
Confidence 35678999999999999999877443
No 222
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=28.62 E-value=33 Score=20.58 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 22 aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~Ll 62 (220)
T 3lhq_A 22 VALRLFSQQGVSAT-SLAEIANAAGVTRGAIYWHFKNKSDLF 62 (220)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcCcccC-CHHHHHHHhCCCceeehhhcCCHHHHH
Confidence 33444666665433 356679999999999999998775443
No 223
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=28.48 E-value=32 Score=20.81 Aligned_cols=42 Identities=2% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
+......|....|-... ...||...|++...+..+|.++-.=
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~Ia~~Agvskgt~Y~yF~sKe~L 57 (197)
T 2f07_A 16 LQAAIEVISEKGLDKAS-ISDIVKKAGTAQGTFYLYFSSKNAL 57 (197)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSSTTH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCchHHHHhCCCHHHH
Confidence 34444557777765433 5567899999999999999887543
No 224
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=28.38 E-value=39 Score=21.99 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
.....|....|-.. ....||...||+...+..+|.++-.=..
T Consensus 49 AA~~lf~e~G~~~~-S~~~IA~~AGVs~~tlY~hF~sKe~Ll~ 90 (273)
T 3c07_A 49 TAMRLFQERGYDRT-TMRAIAQEAGVSVGNAYYYFAGKEHLIQ 90 (273)
T ss_dssp HHHHHHHHTCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHhCCcccc-CHHHHHHHHCCCHHHHHHHcCCHHHHHH
Confidence 33444777776443 3566799999999999999987755443
No 225
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=28.34 E-value=34 Score=20.65 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
....|....|-. .....||...|++...+...|.|+-.=.
T Consensus 22 A~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~ 61 (217)
T 3nrg_A 22 LLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKKDCY 61 (217)
T ss_dssp HHHHHHHSCGGG-CCHHHHHHHHTCCTTGGGGTCSSHHHHH
T ss_pred HHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHcCCHHHHH
Confidence 334466766543 3356679999999999999998875443
No 226
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=28.28 E-value=10 Score=15.33 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=9.3
Q ss_pred cchhhhhhchhhh
Q psy1653 48 ERQIKIWFQNRRM 60 (96)
Q Consensus 48 ~~~V~~WFqnrR~ 60 (96)
.+.|-+-++|||.
T Consensus 3 kkpvpiiycnrrt 15 (21)
T 8tfv_A 3 KKPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCCEEEEGGG
T ss_pred CCcccEEEEcCcc
Confidence 4566777888875
No 227
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=28.20 E-value=29 Score=20.74 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
+......|....|-.. ....||...||+...+..+|.++-.=
T Consensus 13 l~aA~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L 54 (195)
T 2dg7_A 13 KRAALELYSEHGYDNV-TVTDIAERAGLTRRSYFRYFPDKREV 54 (195)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHTTCCHHHHHHHCSSTTGG
T ss_pred HHHHHHHHHhcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3444455777765433 35667999999999999999887543
No 228
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=28.17 E-value=29 Score=18.47 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997754
No 229
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.08 E-value=35 Score=20.65 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=29.2
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
...|....|-.. ....||...||+...+..+|.++-.=..
T Consensus 24 ~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L~~ 63 (204)
T 2ibd_A 24 ATLFAERGLRAT-TVRDIADAAGILSGSLYHHFDSKESMVD 63 (204)
T ss_dssp HHHHHHHCSTTC-CHHHHHHHTTSCHHHHHHHCSCHHHHHH
T ss_pred HHHHHHcCchhc-CHHHHHHHhCCCchhHHHhcCCHHHHHH
Confidence 344777776543 3566799999999999999988754443
No 230
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=27.97 E-value=34 Score=20.70 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-... ...||...|++...+..+|.++-.=.
T Consensus 17 l~aA~~lf~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTT-MNEIASDVGMGKASLYYYFPDKETLF 59 (216)
T ss_dssp HHHHHHHHHHHCSSSCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCCcCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 34444457777764433 55679999999999999999875443
No 231
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=27.92 E-value=35 Score=20.53 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=28.6
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-... ...||...|++...|...|.|+..=.
T Consensus 20 ~~lf~~~G~~~~s-~~~IA~~aGvs~gtlY~yF~sKe~L~ 58 (194)
T 2nx4_A 20 WRLIAARGIEAAN-MRDIATEAGYTNGALSHYFAGKDEIL 58 (194)
T ss_dssp HHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHhcCcccCC-HHHHHHHhCCCcchHHHhCcCHHHHH
Confidence 3447777765433 55679999999999999998875444
No 232
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=27.90 E-value=36 Score=21.01 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=28.3
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 24 KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 24 ~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
..|....|-... ...||...||+...|..+|.++-.=..
T Consensus 46 ~lf~~~G~~~~t-~~~IA~~AGvs~~tlY~~F~sKe~L~~ 84 (221)
T 3g7r_A 46 RIFYAEGIHSVG-IDRITAEAQVTRATLYRHFSGKDDLIL 84 (221)
T ss_dssp HHHHHHCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHhCcccCC-HHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 346666664333 556799999999999999987755443
No 233
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=27.72 E-value=28 Score=20.48 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.....|....|-.. ....||...||+...+...|.++-.=..-
T Consensus 18 aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 60 (191)
T 3on4_A 18 VAEALIQKDGYNAF-SFKDIATAINIKTASIHYHFPSKEDLGVA 60 (191)
T ss_dssp HHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHhCcccC-CHHHHHHHhCCCcchhhhcCCCHHHHHHH
Confidence 33444665554322 35667999999999999999987554433
No 234
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=27.72 E-value=33 Score=14.94 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=10.5
Q ss_pred chhhhhhHHHHHHHHH
Q psy1653 56 QNRRMKLKKEIQAIKE 71 (96)
Q Consensus 56 qnrR~k~kr~~~~~~~ 71 (96)
.|+|.+|+..+..+..
T Consensus 7 RnRRRRWR~Rq~qi~~ 22 (26)
T 1etf_B 7 RNRRRRWRERQRAAAA 22 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4778888776655543
No 235
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=27.71 E-value=13 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcchhhhhhch
Q psy1653 35 RRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 35 ~~~~~la~~l~l~~~~V~~WFqn 57 (96)
....++|..+|++...|+.++..
T Consensus 215 ~s~~EIA~~lgis~~tV~~~~~r 237 (243)
T 1l0o_C 215 QTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 45667899999999999888763
No 236
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.64 E-value=31 Score=17.24 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCcchhhhhhchh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNR 58 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnr 58 (96)
...+|..+|++...|..|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4568999999999999988543
No 237
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=27.51 E-value=37 Score=20.17 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
....|....|-.. ....+|...|++...|..+|.++..=..-
T Consensus 17 A~~l~~~~G~~~~-t~~~IA~~Agvs~~tly~~F~sK~~L~~a 58 (194)
T 3dpj_A 17 ADELFYRQGFAQT-SFVDISAAVGISRGNFYYHFKTKDEILAE 58 (194)
T ss_dssp HHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHcCcccC-CHHHHHHHHCCChHHHHHHcCCHHHHHHH
Confidence 3344666665433 35567999999999999999887554433
No 238
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=27.15 E-value=37 Score=21.46 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.....|....|-. .....||...||+...+..+|.++-.=..-
T Consensus 51 AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~ 93 (255)
T 3g1o_A 51 TAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLLT 93 (255)
T ss_dssp HHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 3334466666533 235667999999999999999887554433
No 239
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=27.04 E-value=29 Score=20.91 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 26 FHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 26 F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
|....|-. .....||...||+...+..+|.++-.=.
T Consensus 38 f~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 73 (212)
T 3nxc_A 38 ESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTRMF 73 (212)
T ss_dssp HC-------CCHHHHHHHTTSCHHHHHTTCSSHHHHH
T ss_pred HhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHHHH
Confidence 44444433 3466789999999999999998875543
No 240
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.94 E-value=28 Score=20.58 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|....|-. .....||...||+...+..+|.++-.=.
T Consensus 17 ~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 58 (196)
T 3col_A 17 DAVAAIILAEGPAG-VSTTKVAKRVGIAQSNVYLYFKNKQALI 58 (196)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHhCCHHHHH
Confidence 33444466665432 2356679999999999999998875433
No 241
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=26.83 E-value=35 Score=21.77 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|-.. ....||...||+...|..+|.++-.=.
T Consensus 56 AA~~lf~e~G~~~~-Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll 96 (260)
T 2of7_A 56 ATYGLIRQQGYEAT-TVEQIAERAEVSPSTVLRYFPTREDIV 96 (260)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHhCcccc-cHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 33444777666443 356679999999999999998875433
No 242
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=26.57 E-value=38 Score=20.85 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+..-...|....|-... ...||...|++...+...|.++-.=.
T Consensus 15 l~aA~~lf~~~Gy~~ts-~~~IA~~AGvskgtlY~~F~sKe~L~ 57 (215)
T 1ui5_A 15 IGAAADLFDRRGYESTT-LSEIVAHAGVTKGALYFHFAAKEDLA 57 (215)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCchhhHhhCCCHHHHH
Confidence 34445557777764433 56679999999999999998775443
No 243
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.39 E-value=33 Score=17.82 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999997754
No 244
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=26.22 E-value=32 Score=21.10 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 29 ~AA~~lf~e~G~~~~-s~~~IA~~AGVsk~tlY~~F~sKe~L~ 70 (207)
T 3bjb_A 29 EAAIELATEKELARV-QMHEVAKRAGVAIGTLYRYFPSKTHLF 70 (207)
T ss_dssp HHHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 334445777776432 356678899999999999998775443
No 245
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=26.19 E-value=31 Score=20.70 Aligned_cols=29 Identities=3% Similarity=0.058 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
....||...|++...+..+|.++-.=..-
T Consensus 36 t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 64 (215)
T 3e7q_A 36 SVRKICAEAGVSVGLINHHYDGKDALVAE 64 (215)
T ss_dssp CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 35678999999999999999887554433
No 246
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=26.17 E-value=30 Score=20.55 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
....||...|++...+..+|.++-.=.
T Consensus 25 ti~~IA~~agvs~~t~Y~~F~sK~~L~ 51 (189)
T 3geu_A 25 TLDDIAKSVNIKKASLYYHFDSKKSIY 51 (189)
T ss_dssp CHHHHHHHTTCCHHHHTTTCSSHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHhCCHHHHH
Confidence 356789999999999999998775443
No 247
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.13 E-value=31 Score=20.98 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+..-...|....|-.. ....||...|++...|..+|.++-.=.
T Consensus 15 l~AA~~lf~~~G~~~~-s~~~IA~~AGvs~gtlY~~F~sKe~L~ 57 (203)
T 2np5_A 15 AAALFDVAAESGLEGA-SVREVAKRAGVSIGAVQHHFSTKDEMF 57 (203)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344455777665432 356679999999999999998875443
No 248
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.89 E-value=32 Score=21.12 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=28.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-.. ....||...|++...|..+|.++-.=.
T Consensus 19 ~~lf~~~G~~~~-s~~~IA~~aGvs~gtlY~yF~sKe~L~ 57 (209)
T 2gfn_A 19 LALIAREGISAV-TTRAVAEESGWSTGVLNHYFGSRHELL 57 (209)
T ss_dssp HHHHHHHCGGGC-CHHHHHHHHSSCHHHHHHHTSSHHHHH
T ss_pred HHHHHHhCcccC-CHHHHHHHHCCCcchHHhcCCCHHHHH
Confidence 344776666432 356679999999999999998875444
No 249
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=25.87 E-value=35 Score=18.42 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 456899999999999999987543
No 250
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=25.82 E-value=32 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|- ......||...|++...+..+|.++-.=.
T Consensus 14 ~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 52 (170)
T 3egq_A 14 LRLYMKKPPH-EVSIEEIAREAKVSKSLIFYHFESKQKLL 52 (170)
T ss_dssp HHHHTTSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHhcCCc-cCcHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 3446666653 23456679999999999999998765443
No 251
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=25.75 E-value=33 Score=20.20 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-. .....||...|++...+..+|.++-.=.
T Consensus 18 ~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 56 (194)
T 2g7s_A 18 RTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKSDLV 56 (194)
T ss_dssp HHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHHHHH
Confidence 34466666533 2466779999999999999999875443
No 252
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=25.68 E-value=35 Score=20.44 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+......|....|-. .....||...|++...+..+|.++-.=..
T Consensus 15 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~~ 58 (193)
T 2dg8_A 15 LAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIEQLLR 58 (193)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHHHHHH
Confidence 334444566666533 23566799999999999999988755443
No 253
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=25.37 E-value=38 Score=20.62 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=28.3
Q ss_pred HHHHHHH-hCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFH-TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~-~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|. ...|- ......||...|++...+..+|.++-.=.
T Consensus 19 aa~~l~~~~~G~~-~~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll 60 (220)
T 3lsj_A 19 AARHLMESGRGFG-SLSLREVTRAAGIVPAGFYRHFSDMDQLG 60 (220)
T ss_dssp HHHHHTTTSCCGG-GCCHHHHHHHHTSCGGGGTTTCSSHHHHH
T ss_pred HHHHHHHhCCCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 3344466 55543 23456679999999999999998775443
No 254
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=25.29 E-value=86 Score=19.78 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhh
Q psy1653 18 QTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIK 52 (96)
Q Consensus 18 q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~ 52 (96)
-+..|...=+...|.+......+|..|+|+...|.
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 34444444344589999999999999999988764
No 255
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=25.29 E-value=30 Score=20.59 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
....||...|++...+..+|.++-.=..
T Consensus 33 ti~~IA~~agvs~~t~Y~~F~sK~~L~~ 60 (204)
T 3eup_A 33 SLTDLTEATNLTKGSIYGNFENKEAVAI 60 (204)
T ss_dssp CHHHHHHHHTCCHHHHTTTSSSHHHHHH
T ss_pred CHHHHHHHhCCCcHHHHHhCCCHHHHHH
Confidence 3667899999999999999987755443
No 256
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=25.09 E-value=37 Score=21.07 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-.. ....||...||+...|..+|.++-.=.
T Consensus 36 l~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~Ll 78 (230)
T 2iai_A 36 LSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEELL 78 (230)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHHHH
Confidence 4555666777776543 356679999999999999998775443
No 257
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=24.99 E-value=84 Score=16.56 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=37.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhC-CCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 7 RRRGRQTYTRYQTLELEKEF-HTN-HYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 7 ~rr~r~~~s~~q~~~L~~~F-~~~-~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+++|-.++++.-....... ... ...++..+.++-..-|++..+|+.=+|..|...+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 46677788887544444433 333 23445666666666688999999988876665554
No 258
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=24.95 E-value=34 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
....||...||+...+..+|.++..=.
T Consensus 42 t~~~Ia~~agvs~~t~Y~~F~~K~~L~ 68 (203)
T 3mnl_A 42 QMRAVADRADVAVGTLYRYFPSKVHLL 68 (203)
T ss_dssp CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred CHHHHHHHcCCChhHHHHHcCCHHHHH
Confidence 356789999999999999998865443
No 259
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=24.90 E-value=45 Score=20.24 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
-...|....|-.. ....||...|++...|...|.|+-.=..
T Consensus 21 A~~lf~~~G~~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L~~ 61 (211)
T 3bhq_A 21 ATAAFISKGYDGT-SMEEIATKAGASKQTVYKHFTDKETLFG 61 (211)
T ss_dssp HHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3444777776433 3566799999999999999998755443
No 260
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=24.81 E-value=34 Score=21.00 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=26.2
Q ss_pred HHHHHHH---HHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKE---FHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~---F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..+|... |....|-.. ....||...||+...|..+|.|+-.=.
T Consensus 27 ~~Il~aA~~lf~e~G~~~~-s~~~IA~~aGvskgtlY~yF~sKe~L~ 72 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRF-TTARVAERAGVSIGSLYQYFPNKAAIL 72 (214)
T ss_dssp HHHHHHHHHC------CCC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHhhCcccc-cHHHHHHHhCCCCchHHHhCCCHHHHH
Confidence 3344444 666665433 356679999999999999998875444
No 261
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.56 E-value=36 Score=20.25 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCcchhhhhhc
Q psy1653 37 RIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFq 56 (96)
+.++|..+||+...++.|-.
T Consensus 3 I~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34678888999999988854
No 262
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=24.53 E-value=31 Score=20.34 Aligned_cols=44 Identities=9% Similarity=-0.054 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
+......|....|-.. ....||...|++...+..+|.++-.=..
T Consensus 14 l~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (183)
T 1zk8_A 14 VETAAEIADANGVQEV-TLASLAQTLGVRSPSLYNHVKGLQDVRK 57 (183)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHhcCcccc-CHHHHHHHcCCCchHHHHHcCCHHHHHH
Confidence 3344455666665432 3566799999999999999988754443
No 263
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=24.50 E-value=48 Score=19.96 Aligned_cols=42 Identities=7% Similarity=-0.118 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..-...|....|-.. ....||...|++...+..+|.|+-.=.
T Consensus 14 ~aA~~lf~~~G~~~t-s~~~IA~~aGvs~gtlY~~F~sKe~L~ 55 (197)
T 2gen_A 14 QAALACFSEHGVDAT-TIEMIRDRSGASIGSLYHHFGNKERIH 55 (197)
T ss_dssp HHHHHHHHHHCTTTC-CHHHHHHHHCCCHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHcCcccC-CHHHHHHHHCCChHHHHHHCCCHHHHH
Confidence 334455777776433 356678999999999999998875444
No 264
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=24.48 E-value=36 Score=19.88 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=26.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...|....|- ......||...|++...+..+|.++-.
T Consensus 24 ~~lf~~~G~~-~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (156)
T 3ljl_A 24 VDQLLRLGYD-KMSYTTLSQQTGVSRTGISHHFPKKTD 60 (156)
T ss_dssp HHHHHHTHHH-HCCHHHHHHHHTCCHHHHHHHCSSTHH
T ss_pred HHHHHHhChh-hcCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 3345555542 223567799999999999999988744
No 265
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.25 E-value=38 Score=17.67 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.3
Q ss_pred HHHHHHHcCCCcchhhhhhch
Q psy1653 37 RIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqn 57 (96)
...||..+|++...|..|..+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999987
No 266
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=24.02 E-value=1e+02 Score=17.28 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhch
Q psy1653 10 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 10 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
.+..++......+-..+..+. ....++|...+|+..+|..|-..
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~----~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGL----ITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTS----SCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHcCC----CCHHHHHHHhCCCHHHHHHHHHH
Confidence 344577776544433333333 13557799999999999999843
No 267
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.02 E-value=39 Score=18.49 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|-.+++.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 356899999999999999876643
No 268
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.02 E-value=36 Score=20.51 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=15.7
Q ss_pred HHHHHHHcCCCcchhhhhhc
Q psy1653 37 RIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFq 56 (96)
+.++|..+||+...++.|-.
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45678888999888888864
No 269
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=23.99 E-value=36 Score=21.20 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
....|....|-.. ....||...||+...|..+|.++-.=..-
T Consensus 53 A~~lf~e~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L~~a 94 (236)
T 3q0w_A 53 AENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAVLLT 94 (236)
T ss_dssp HHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHcCcccC-CHHHHHHHhCCcHHHHHHHCCCHHHHHHH
Confidence 3344667665332 35567899999999999999987554433
No 270
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.96 E-value=36 Score=18.16 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999997654
No 271
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=23.95 E-value=37 Score=20.56 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCcchhhhhhc
Q psy1653 37 RIEMAHALCLTERQIKIWFQ 56 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFq 56 (96)
+.++|..+||+...++.|=.
T Consensus 7 I~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45678888999999998864
No 272
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.80 E-value=38 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...||...||+...+..+|.++-.=.
T Consensus 26 ~~~IA~~AGvskgtlY~hF~sKe~L~ 51 (208)
T 2g3b_A 26 VNDVAEVAGVSPGLLYYHFKDRIGLL 51 (208)
T ss_dssp HHHHHHHHTSCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 56789999999999999998775443
No 273
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.68 E-value=35 Score=20.71 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=28.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-.. ....||...|++...|...|.++-.=.
T Consensus 22 ~~lf~~~G~~~~-s~~~IA~~aGvsk~tlY~hF~sKe~L~ 60 (200)
T 2hyj_A 22 AEIASEEGLDGI-TIGRLAEELEMSKSGVHKHFGTKETLQ 60 (200)
T ss_dssp HHHHHHHCGGGC-CHHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHcCcccC-CHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 344777666433 356678999999999999998765433
No 274
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=23.57 E-value=44 Score=20.19 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 24 KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 24 ~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
..|....|- ......||...|++...+..+|.|+..=..
T Consensus 16 ~lf~~~Gy~-~~s~~~IA~~AgvskgtlY~yF~sKe~L~~ 54 (202)
T 2id6_A 16 EVFGKKGYD-RATTDEIAEKAGVAKGLIFHYFKNKEELYY 54 (202)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHTCCTHHHHHHHSSHHHHHH
T ss_pred HHHHHcCcc-cCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 335544432 123567899999999999999998755443
No 275
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=23.50 E-value=38 Score=20.59 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=27.6
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 23 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 23 ~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
...|....|-.. ....||...||+...|..+|.++-.=.
T Consensus 33 ~~lf~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 71 (214)
T 2zb9_A 33 GELLLTEGTAQL-TFERVARVSGVSKTTLYKWWPSKGALA 71 (214)
T ss_dssp HHHHHHHCGGGC-CHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHhCcccC-CHHHHHHHHCCCHHHHHHHCCCHHHHH
Confidence 334666665332 356679999999999999998774433
No 276
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=23.41 E-value=1.9e+02 Score=20.93 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 14 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 14 ~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
++..+..+|.-.|-.... ......++|..+||+...|+.....-+.+.|
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 444555566555542211 1235677899999999999998875555555
No 277
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=23.22 E-value=44 Score=20.10 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
+......|....|-.. ....||...|++...+...|.++..=
T Consensus 16 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L 57 (216)
T 3s5r_A 16 LDAATTLFAEQGIAAT-TMAEIAASVGVNPAMIHYYFKTRDSL 57 (216)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHTTTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHHCCCHHHHHHHcCCHHHH
Confidence 3444455777666443 35667999999999999999877544
No 278
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=23.12 E-value=41 Score=20.05 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.....|....|- ......||...|++...|..+|.++-.=.
T Consensus 16 AA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 56 (195)
T 3frq_A 16 AATVVLKRCGPI-EFTLSGVAKEVGLSRAALIQRFTNRDTLL 56 (195)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHhhCcc-cCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 333445554431 22356779999999999999998775443
No 279
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.82 E-value=72 Score=20.42 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=31.9
Q ss_pred CCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhh
Q psy1653 13 TYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 13 ~~s~~q-~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
..+... +......|....|-.. ....||..+||+...+..+|.|+-.
T Consensus 18 ~~tr~~Il~AA~~l~~e~G~~~~-S~~~IA~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 18 ALSRRWIVDTAVALMRAEGLEKV-TMRRLAQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSC-CHHHHHHHTTSCHHHHTTTCCSHHH
T ss_pred ccCHHHHHHHHHHHHHhcCchhc-CHHHHHHHHCCChhHHHHHcCCHHH
Confidence 344443 3344555777776443 3556799999999999999988643
No 280
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.79 E-value=39 Score=21.06 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
..-...|.... ......||..+||+...+...|.|+-.=
T Consensus 18 ~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~L 56 (213)
T 2g7g_A 18 EAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAV 56 (213)
T ss_dssp HHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHH
Confidence 33444466555 4456678999999999999999876443
No 281
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=22.78 E-value=42 Score=17.55 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45889999999999999997765
No 282
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.55 E-value=43 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=17.1
Q ss_pred HHHHHHHcCCCcchhhhhhch
Q psy1653 37 RIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqn 57 (96)
+.++|..+||+...++.|-..
T Consensus 19 I~evA~~~gvs~~tLR~Ye~~ 39 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDKQ 39 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 567888999999999988643
No 283
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.55 E-value=1.1e+02 Score=17.12 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhHH
Q psy1653 13 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 64 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~kr 64 (96)
.+++.+..++.-.|-.+.. ......++|..+|++...|+.....-..+.|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4567777777777753211 11245678999999999998877644444444
No 284
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=22.54 E-value=1.2e+02 Score=17.56 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCcchhhhhhch
Q psy1653 4 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL-CLTERQIKIWFQN 57 (96)
Q Consensus 4 ~~~~rr~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l-~l~~~~V~~WFqn 57 (96)
...+...+..+|+++...|......-.. .-..+|..+ |=+..+|+.-+.|
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhh
Confidence 3345566788999999999988776442 244556666 4455566544433
No 285
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.52 E-value=49 Score=18.08 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCcchhhhhhchh
Q psy1653 35 RRRIEMAHALCLTERQIKIWFQNR 58 (96)
Q Consensus 35 ~~~~~la~~l~l~~~~V~~WFqnr 58 (96)
.....||..+|+++..+...|+.-
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346778999999999888888543
No 286
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=22.50 E-value=1.4e+02 Score=19.52 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhhH
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 63 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~k 63 (96)
..++..+..+|.-... .+ ...++|..||+++..|+....+=+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~--G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR--GK----TNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688888888866632 21 3567899999999999998876655543
No 287
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=22.35 E-value=40 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 36 RRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
....||..+|++...+..+|.|+-.=.
T Consensus 25 s~~~IA~~~Gvs~~slY~hF~~K~~Ll 51 (207)
T 2xpw_A 25 TTRKLAQKLGIEQPTLYWHVKNKRALL 51 (207)
T ss_dssp CHHHHHHHHTCCHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHhCCCcchHHHhcCCHHHHH
Confidence 356789999999999999998865443
No 288
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=22.16 E-value=63 Score=20.08 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCcchhhhhhch
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLT----RRRRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~----~~~~~~la~~l~l~~~~V~~WFqn 57 (96)
..|+.++.......-...-.|. ......+|..+||+...+..|-..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 3477776665432211110111 125678899999999999999863
No 289
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=22.12 E-value=41 Score=18.79 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999997654
No 290
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=21.80 E-value=45 Score=20.64 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 22 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 22 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
....|....|-.. ....||...||+...|..+|.++-.=
T Consensus 48 A~~lf~e~G~~~~-tv~~IA~~AGvs~~tlY~~F~sKe~L 86 (214)
T 2guh_A 48 AGRAFATRPYREI-TLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp HHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHcChhhc-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3344777776433 35567899999999999999876443
No 291
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=21.80 E-value=98 Score=18.31 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHh-------CCCCCHHHHHHHHHHcCCCc
Q psy1653 13 TYTRYQTLELEKEFHT-------NHYLTRRRRIEMAHALCLTE 48 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~-------~~~p~~~~~~~la~~l~l~~ 48 (96)
.+|..|+..|...|.. +.+.+..+...+...||+.+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 5788999999988752 24677777777777888643
No 292
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=21.76 E-value=43 Score=20.70 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 20 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 20 ~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
......|....|- ......||...||+...|..+|.++-.=.
T Consensus 37 ~aA~~lf~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~sK~~L~ 78 (226)
T 2pz9_A 37 AAAKEEFARHGIA-GARVDRIAKQARTSKERVYAYFRSKEALY 78 (226)
T ss_dssp HHHHHHHHHHHHH-HCCHHHHHHHTTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCcc-cCcHHHHHHHHCCChHHHHHHcCCHHHHH
Confidence 3334446555542 22356789999999999999998775443
No 293
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=21.72 E-value=1.6e+02 Score=18.83 Aligned_cols=44 Identities=20% Similarity=0.088 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 12 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 12 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
..+|+.+..+|.-... .+ ...++|..||+++..|+.-..+=+.|
T Consensus 174 ~~Lt~re~~vl~~~~~--G~----s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 174 VRLTARETEMLKWTAV--GK----TYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp CCCCHHHHHHHHHHHT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3566666666654321 11 24667888999999998877654444
No 294
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=21.28 E-value=44 Score=20.23 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
.....|....|-.. ....||...||+...+..+|.++-.=
T Consensus 11 aA~~lf~~~G~~~~-s~~~IA~~Agvs~~t~Y~~F~sK~~L 50 (212)
T 3rh2_A 11 ASLELFNEHGERTI-TTNHIAAHLDISPGNLYYHFRNKEDI 50 (212)
T ss_dssp HHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 33444666555322 35667999999999999999876543
No 295
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=21.20 E-value=45 Score=17.43 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCcchhhhhhch
Q psy1653 36 RRIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 36 ~~~~la~~l~l~~~~V~~WFqn 57 (96)
....+|..||++..-|-.|...
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 3467899999999999999754
No 296
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.20 E-value=52 Score=17.46 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 35689999999999999997765
No 297
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.95 E-value=50 Score=17.48 Aligned_cols=21 Identities=0% Similarity=0.006 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCcchhhhhhch
Q psy1653 37 RIEMAHALCLTERQIKIWFQN 57 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqn 57 (96)
...||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999864
No 298
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.95 E-value=31 Score=21.01 Aligned_cols=43 Identities=5% Similarity=0.071 Sum_probs=8.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 19 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 19 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
+......|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 36 l~aa~~l~~~~G~~~~-ti~~IA~~agvs~~t~Y~~F~sK~~Ll 78 (212)
T 2np3_A 36 LTAARVCFAERGFDAT-SLRRIAETAGVDQSLVHHFYGTKENLF 78 (212)
T ss_dssp HHHHHHHC----------------------------CCC-CHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHhCCHHHHH
Confidence 3344445666665443 456679999999999999998875443
No 299
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.89 E-value=50 Score=17.09 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|-.++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35689999999999999997664
No 300
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=20.81 E-value=48 Score=20.85 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 21 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 21 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
.-...|....|- ......||...||+...|..+|.++-.=.
T Consensus 26 AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll 66 (251)
T 3npi_A 26 IALSLFSELGFS-DAKLEAIAKKSGMSKRMIHYHFGDKRGLY 66 (251)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHcCcc-ccCHHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 333445555432 12356679999999999999998875443
No 301
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=20.80 E-value=1.5e+02 Score=17.93 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHc
Q psy1653 11 RQTYTRYQTLELEKEFHT--NHYLTRRRRIEMAHAL 44 (96)
Q Consensus 11 r~~~s~~q~~~L~~~F~~--~~~p~~~~~~~la~~l 44 (96)
-..+++.++..|+.-|.. ++.|+...+-.+|-.|
T Consensus 15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 356899999999999975 6788888877777555
No 302
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=20.78 E-value=83 Score=20.56 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=33.1
Q ss_pred CCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 13 TYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 13 ~~s~~q-~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..+... +..-...|....|-... ...||..+||+...+...|.|+-.=.
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~S-mr~IA~~aGVs~~tlY~hF~~K~~Ll 75 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAAS-MRRVAAELGAGTMSLYYYVPTKEDLV 75 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHTTCCSHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 445543 33445557777765443 55679999999999999998775433
No 303
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=20.73 E-value=44 Score=20.82 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhh
Q psy1653 24 KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 61 (96)
Q Consensus 24 ~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k 61 (96)
..|....+-. .....||..+|++...+...|.|+-.=
T Consensus 13 ~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hf~~K~~L 49 (209)
T 3bqy_A 13 DLLNESGLDT-LTMRRLAQAMDVQAGALYRYFAAKQDL 49 (209)
T ss_dssp HHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHhCCccc-CCHHHHHHHhCCCcchHHhhcCCHHHH
Confidence 3355544432 235667999999999999999876433
No 304
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=20.62 E-value=49 Score=21.20 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=32.2
Q ss_pred CCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHcCCCcchhhhhhchhhhhh
Q psy1653 13 TYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 62 (96)
Q Consensus 13 ~~s~~q-~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WFqnrR~k~ 62 (96)
..+... +..-...|....+-.. ....||..+|++...+..+|.|+-.=.
T Consensus 28 ~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAETF-SVRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCCCC-CHHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 344433 3344444666665443 355679999999999999998865433
No 305
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=20.27 E-value=1e+02 Score=15.65 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcC-CCcchhhhhh
Q psy1653 13 TYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALC-LTERQIKIWF 55 (96)
Q Consensus 13 ~~s~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~-l~~~~V~~WF 55 (96)
.+++.+...|...|.. +.+.+..+...+...+| ++...|...|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 52 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMM 52 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4677788888888753 34566777766666665 3444455544
No 306
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.08 E-value=50 Score=18.35 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCcchhhhhhchhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRR 59 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR 59 (96)
...||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45688999999999999987654
No 307
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.05 E-value=48 Score=20.23 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=15.7
Q ss_pred HHHHHHHcCCCcchhhhhh
Q psy1653 37 RIEMAHALCLTERQIKIWF 55 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WF 55 (96)
+.++|..+||+...++.|-
T Consensus 14 i~e~A~~~gvs~~TLR~ye 32 (154)
T 2zhg_A 14 PGEVAKRSGVAVSALHFYE 32 (154)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4567888999999999884
No 308
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.04 E-value=56 Score=18.82 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcchhhhhhchhhh
Q psy1653 37 RIEMAHALCLTERQIKIWFQNRRM 60 (96)
Q Consensus 37 ~~~la~~l~l~~~~V~~WFqnrR~ 60 (96)
...||..+|++...|..|-..++.
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 346788889999999999977553
Done!