BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16530
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 5 WDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHE------------DPGRPKYKWMA 52
W F E+ I G+ P W W PH+ DP + KW
Sbjct: 248 WQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFY 307
Query: 53 EHTEN----FSGSNK 63
+HT N FSG+N+
Sbjct: 308 QHTPNDAWDFSGNNE 322
>pdb|3KOF|A Chain A, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
pdb|3KOF|B Chain B, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
Length = 337
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 180 SFAQARACAEAGVFLISPYVGEIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 236
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 159 SFAQARACAEAGVFLISPFVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 160 SFAQARACAEAGVFLISPFVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 216
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 159 SFAQARACAEAGVFLISPFVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 159 SFAQARACAEAGVFLISPFVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 159 SFAQARACAEAGVFLISPFVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|3CWN|A Chain A, Escherichia Coli Transaldolase B Mutant F178y
pdb|3CWN|B Chain B, Escherichia Coli Transaldolase B Mutant F178y
Length = 337
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 180 SFAQARACAEAGVFLISPYVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 236
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 4 SWDQQRFCLES-LFTIS---GSLVPAEWYGWLHYKTDYLPHEDPG----RPKYKWMAEH 54
S+ Q R C E+ +F IS G ++ +WY K +Y P EDPG Y++ EH
Sbjct: 159 SFAQARACAEAGVFLISPFVGRIL--DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,018,977
Number of Sequences: 62578
Number of extensions: 114910
Number of successful extensions: 183
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 11
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)