BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16530
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2
Length = 146
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 19 SGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSG-SNKQYVPYSSTRTKIEA 77
+ VP EW+ WLH+ TD P P P W+ EH EN S ++K+YVPYS+TRTKI+
Sbjct: 78 DATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSIYADKKYVPYSTTRTKIQG 136
Query: 78 WKP 80
W+P
Sbjct: 137 WQP 139
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Bos taurus GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
+ + + GS+VP EW+ WLH TD P P + H N SG+ +QYVPYS+TR
Sbjct: 72 NTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYSTTR 131
Query: 73 TKIEAWKP 80
KI+ W P
Sbjct: 132 KKIQEWVP 139
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
+ + + GS+VP EW+ WLH TD P P + H N +G+ +QYVPYS+TR
Sbjct: 72 NTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQYVPYSTTR 131
Query: 73 TKIEAWKP 80
KI+ W P
Sbjct: 132 KKIQEWIP 139
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
+ + + GS+VP EW+ WLH TD P P + H N +G+ +QYVPYS+TR
Sbjct: 72 NTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYSTTR 131
Query: 73 TKIEAWKP 80
KI+ W P
Sbjct: 132 KKIQEWIP 139
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Homo sapiens GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
+ + + GS+VP EW+ WLH TD P P + H N +G+ +QYVPYS+TR
Sbjct: 72 NTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYSTTR 131
Query: 73 TKIEAWKP 80
KI+ W P
Sbjct: 132 KKIQEWIP 139
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
+ + + GS+VP EW+ WLH TD P P + H N +G+ +QYVPYS+TR
Sbjct: 72 NTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYSTTR 131
Query: 73 TKIEAWKP 80
KI+ W P
Sbjct: 132 KKIQEWIP 139
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Mus musculus GN=Ndufa12 PE=1 SV=2
Length = 145
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
+ + + GS+VP EW+ WLH TD P +P + H N S + +QYVPYS+TR
Sbjct: 72 NTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYSTTR 131
Query: 73 TKIEAWKP 80
KI W P
Sbjct: 132 KKIHEWVP 139
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
Length = 159
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 19 SGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRT 73
+ S VPAEW+GWLH+ TD+ E ++ EH ENFSG Y+ +S T
Sbjct: 85 NASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHT 139
>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
Length = 138
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 21 SLVPAEWYGWLHYKTDYLPHED-PGRPKYKWMAEHTENFSGSNKQYVP 67
+ +P E++ W+H+ +D LP E P P YK H N +G++ Y P
Sbjct: 69 TTIPPEYHSWIHHVSDKLPSEMLPFSPTYK--RPHIANPTGTDGAYTP 114
>sp|A8R3S4|QEDH_PSEPU Quinoprotein ethanol dehydrogenase OS=Pseudomonas putida GN=qedA
PE=1 SV=1
Length = 623
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 5 WDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHE------------DPGRPKYKWMA 52
W F E+ I G+ P W W D PH+ DP + KW
Sbjct: 282 WQSASFDPETNTIIVGAGNPGPWNTWARTSKDGNPHDFDSLYTSGQVGVDPTTGEVKWFY 341
Query: 53 EHTEN----FSGSNK 63
+HT N FSG+N+
Sbjct: 342 QHTPNDAWDFSGNNE 356
>sp|Q9Z4J7|EXAA_PSEAE Quinoprotein ethanol dehydrogenase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=exaA PE=1 SV=1
Length = 623
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 5 WDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHE------------DPGRPKYKWMA 52
W F E+ I G+ P W W PH+ DP + KW
Sbjct: 282 WQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFY 341
Query: 53 EHTEN----FSGSNK 63
+HT N FSG+N+
Sbjct: 342 QHTPNDAWDFSGNNE 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,271,972
Number of Sequences: 539616
Number of extensions: 1296001
Number of successful extensions: 2546
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2530
Number of HSP's gapped (non-prelim): 17
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)