Query psy16530
Match_columns 81
No_of_seqs 111 out of 337
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:39:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ddz_A 190AA long hypothetical 27.8 26 0.00088 24.5 1.6 13 16-28 14-26 (190)
2 2jni_A Arenicin-2; peptide, an 23.6 20 0.00067 17.3 0.2 7 9-15 1-7 (26)
3 2c36_A Glycoprotein D HSV-1; v 20.2 27 0.00093 25.8 0.5 11 19-29 264-274 (285)
4 4gjz_A Lysine-specific demethy 11.7 59 0.002 21.0 0.4 13 3-15 150-162 (235)
5 1vrb_A Putative asparaginyl hy 9.2 80 0.0027 22.9 0.4 11 3-13 167-177 (342)
6 1o22_A Orphan protein TM0875; 8.8 72 0.0025 21.4 -0.0 12 63-74 124-135 (170)
7 2lnh_A N-WAsp, neural wiskott- 8.7 87 0.003 17.9 0.3 17 18-34 18-34 (65)
8 3al5_A HTYW5, JMJC domain-cont 8.5 1.2E+02 0.004 21.8 1.0 13 3-15 193-205 (338)
9 1p16_C Phosphorylated peptide 7.6 2E+02 0.0067 13.9 1.3 17 52-68 9-25 (26)
10 1cee_B Wiskott-aldrich syndrom 7.5 1.1E+02 0.0038 16.9 0.4 16 18-33 29-44 (59)
No 1
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=27.80 E-value=26 Score=24.53 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=11.7
Q ss_pred cCCCCCccCccch
Q psy16530 16 FTISGSLVPAEWY 28 (81)
Q Consensus 16 ~~~daS~IPPeWH 28 (81)
.+||+|||.|-|-
T Consensus 14 i~YDGsqi~slWA 26 (190)
T 2ddz_A 14 IDYDGSAIRSHWA 26 (190)
T ss_dssp CCBCSGGGSTTHH
T ss_pred cCcChhhhhHHHH
Confidence 6899999999985
No 2
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=23.62 E-value=20 Score=17.29 Aligned_cols=7 Identities=29% Similarity=0.952 Sum_probs=5.0
Q ss_pred ceEEcCC
Q psy16530 9 RFCLESL 15 (81)
Q Consensus 9 RwV~y~~ 15 (81)
|||.|+-
T Consensus 1 rwcvyay 7 (26)
T 2jni_A 1 RWCVYAY 7 (26)
T ss_dssp CCEEEEE
T ss_pred CeEEEEE
Confidence 6888764
No 3
>2c36_A Glycoprotein D HSV-1; viral protein, immunoglobulin-like, transmembrane; HET: NAG MAN BMA NDG; 2.11A {Human herpesvirus 1} PDB: 2c3a_A* 3sku_A* 3u82_A 1l2g_A* 1jma_A*
Probab=20.18 E-value=27 Score=25.83 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=8.8
Q ss_pred CCCccCccchh
Q psy16530 19 SGSLVPAEWYG 29 (81)
Q Consensus 19 daS~IPPeWH~ 29 (81)
=++||||.||.
T Consensus 264 ~~~~~~~~~~~ 274 (285)
T 2c36_A 264 VAPQIPPNWHI 274 (285)
T ss_dssp CCCCCCTTCCC
T ss_pred ccccCCCCccC
Confidence 36799999984
No 4
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=11.67 E-value=59 Score=20.96 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=10.6
Q ss_pred CcCCccceEEcCC
Q psy16530 3 ESWDQQRFCLESL 15 (81)
Q Consensus 3 e~~gr~RwV~y~~ 15 (81)
.+.|++||+.|.-
T Consensus 150 qv~G~K~w~L~pP 162 (235)
T 4gjz_A 150 QVMGRKYIRLYSP 162 (235)
T ss_dssp EEESCEEEEEECG
T ss_pred EEeeeEeeEEcCc
Confidence 4679999999864
No 5
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=9.20 E-value=80 Score=22.88 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=9.7
Q ss_pred CcCCccceEEc
Q psy16530 3 ESWDQQRFCLE 13 (81)
Q Consensus 3 e~~gr~RwV~y 13 (81)
++.|++||..|
T Consensus 167 Qv~G~Krw~L~ 177 (342)
T 1vrb_A 167 QIQGEKTWKLA 177 (342)
T ss_dssp EEESCEEEEEE
T ss_pred EEEEEEEEEEe
Confidence 46799999999
No 6
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=8.77 E-value=72 Score=21.41 Aligned_cols=12 Identities=67% Similarity=1.063 Sum_probs=9.7
Q ss_pred CccccCCCCcCc
Q psy16530 63 KQYVPYSSTRTK 74 (81)
Q Consensus 63 ~aY~P~~t~~~k 74 (81)
.-|+||+++|.|
T Consensus 124 ~~yvpys~vk~k 135 (170)
T 1o22_A 124 KIYVPYSSVKKK 135 (170)
T ss_dssp EEEEEGGGSTTC
T ss_pred EEEeehHHhhhc
Confidence 468999999764
No 7
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=8.73 E-value=87 Score=17.90 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=12.9
Q ss_pred CCCCccCccchhhhccc
Q psy16530 18 ISGSLVPAEWYGWLHYK 34 (81)
Q Consensus 18 ~daS~IPPeWH~WLH~~ 34 (81)
++-+-|||||-.-|...
T Consensus 18 f~~~glp~eW~~ll~~s 34 (65)
T 2lnh_A 18 FDLNNLDPELKNLFDMC 34 (65)
T ss_dssp ECGGGCCTTHHHHHHHH
T ss_pred cCCcCCCHHHHHHHHHc
Confidence 45567999999888643
No 8
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=8.48 E-value=1.2e+02 Score=21.75 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=10.9
Q ss_pred CcCCccceEEcCC
Q psy16530 3 ESWDQQRFCLESL 15 (81)
Q Consensus 3 e~~gr~RwV~y~~ 15 (81)
.+.|++||+.|.-
T Consensus 193 qv~G~K~w~L~pP 205 (338)
T 3al5_A 193 QVTGKKRVVLFSP 205 (338)
T ss_dssp ECSSCEEEEEECG
T ss_pred EEEEEEEEEEECc
Confidence 4679999999975
No 9
>1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans}
Probab=7.62 E-value=2e+02 Score=13.87 Aligned_cols=17 Identities=6% Similarity=0.226 Sum_probs=12.7
Q ss_pred cCCcCCCCCCCCccccC
Q psy16530 52 AEHTENFSGSNKQYVPY 68 (81)
Q Consensus 52 ~~h~~N~TGT~~aY~P~ 68 (81)
.+..+|.++|.-+|.|.
T Consensus 9 SPTSPsYsPtSpsy~~~ 25 (26)
T 1p16_C 9 SPTSPSYSPTSPSXXXX 25 (26)
T ss_pred CCCCCCCCCCCcccccc
Confidence 45677888888888774
No 10
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=7.51 E-value=1.1e+02 Score=16.88 Aligned_cols=16 Identities=0% Similarity=-0.051 Sum_probs=12.5
Q ss_pred CCCCccCccchhhhcc
Q psy16530 18 ISGSLVPAEWYGWLHY 33 (81)
Q Consensus 18 ~daS~IPPeWH~WLH~ 33 (81)
|+..-+||+|-.=|..
T Consensus 29 f~~~g~pp~W~~ll~~ 44 (59)
T 1cee_B 29 FDVNNLDPDLRSLFSR 44 (59)
T ss_dssp CCCSSCCHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHH
Confidence 4556799999998865
Done!