RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16530
(81 letters)
>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12.
This family contains the 17.2 kD subunit of complex I
(NDUFA12) and its homologues. The family also contains a
second related eukaryotic protein of unknown function, .
Length = 100
Score = 68.1 bits (167), Expect = 8e-17
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 20 GSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSS------TRT 73
S VP EW+GWLH+ TD P E+P W H N +G+ Y PY S
Sbjct: 35 ASRVPPEWHGWLHHTTDEPPTEEP-LKPRAWEKPHQPNLTGTPGAYRPYGSLLRRPRATG 93
Query: 74 KIEAWKP 80
EAW P
Sbjct: 94 DYEAWTP 100
>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated.
Length = 133
Score = 49.6 bits (119), Expect = 3e-09
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 21 SLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTK------ 74
S +P EW+GWLH+ D P ++P P+ +W H N +G+ Y P S
Sbjct: 64 SRIPPEWHGWLHHTVDVPPTKEPYPPR-EWEKPHQPNLTGTPLAYRPKGSILRGGERPRA 122
Query: 75 ---IEAWKPK 81
+AW P
Sbjct: 123 TGDYDAWTPG 132
>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1
alpha subcomplex subunit.
Length = 159
Score = 46.8 bits (111), Expect = 4e-08
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 19 SGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR------ 72
+ S VPAEW+GWLH+ TD+ E ++ EH ENFSG ++Y+ +S
Sbjct: 85 NASQVPAEWHGWLHFITDHTGDELLMLKPKRYGLEHKENFSGEGEEYIYHSKGHTLNPGQ 144
Query: 73 ---TKIEAWKPK 81
T+ ++W+P
Sbjct: 145 KDWTRYQSWQPT 156
>gnl|CDD|226284 COG3761, COG3761, NADH:ubiquinone oxidoreductase 17.2 kD subunit
[Energy production and conversion].
Length = 118
Score = 39.5 bits (92), Expect = 2e-05
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 21 SLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRT------- 73
S +P W+GWLH++ D P + P+ +W H N +G+ Y P S
Sbjct: 50 SKIPPGWHGWLHHRVDEPPKSEQLFPR-EWQKPHLPNLTGTPHAYRPKGSLARAGERPRV 108
Query: 74 --KIEAWKP 80
+AW P
Sbjct: 109 TGDYDAWTP 117
>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa
subunit; Provisional.
Length = 115
Score = 34.5 bits (79), Expect = 0.001
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 13 ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYV 66
+ S +P EW+GWLHY D P E R ++ E + + QY+
Sbjct: 39 ADKDDYNASNIPPEWHGWLHYVNDE-PGELEDRTAPRYQLEFIAGGTTTGTQYM 91
>gnl|CDD|236481 PRK09360, lamB, maltoporin; Provisional.
Length = 415
Score = 25.7 bits (57), Expect = 3.1
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 28 YGWLHYKTDYLPHEDPGRPKYKWM--AEHTENFSGSNKQYV 66
YG + Y G K M AEHT++ G ++V
Sbjct: 218 YGRANLTDGY--KLADGASKDGVMFTAEHTQSLLGGFNKFV 256
>gnl|CDD|221269 pfam11854, DUF3374, Protein of unknown function (DUF3374). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 665 to 712 amino acids in
length.
Length = 675
Score = 25.4 bits (56), Expect = 4.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 55 TENFSGSNKQYVPYSSTRTKIEA 77
+ SG Q PY TR K +
Sbjct: 361 IDVTSGQTAQNTPYDRTRQKAKL 383
>gnl|CDD|240379 PTZ00360, PTZ00360, sexual stage antigen; Provisional.
Length = 543
Score = 25.1 bits (55), Expect = 4.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 31 LHYKTDYLPHEDPGRPKYKWM 51
L++ Y P + P Y+W+
Sbjct: 156 LNFACKYQPKDGNKAPVYRWL 176
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the majority
of known and predicted transaldolase sequences,
including E. coli TalA and TalB. It excluded two other
families. The first includes E. coli transaldolase-like
protein TalC. The second family includes the putative
transaldolases of Helicobacter pylori and Mycobacterium
tuberculosis [Energy metabolism, Pentose phosphate
pathway].
Length = 317
Score = 24.7 bits (54), Expect = 6.0
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 4 SWDQQRFCLESLFTISGSLVPA--EWYGWLHYKTDYLPHEDPG 44
S+ Q C E+ T+ V +WY K +Y EDPG
Sbjct: 158 SFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPG 200
>gnl|CDD|218168 pfam04602, Arabinose_trans, Mycobacterial cell wall arabinan
synthesis protein. Arabinosyltransferase is involved in
arabinogalactan (AG) biosynthesis pathway in
mycobacteria. AG is a component of the macromolecular
assembly of the mycolyl-AG-peptidoglycan complex of the
cell wall. This enzyme has important clinical
applications as it is believed to be the target of the
antimycobacterial drug Ethambutol.
Length = 1075
Score = 24.7 bits (54), Expect = 6.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 21 SLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMA 52
S++ WLH++ DY H R + A
Sbjct: 642 SIIVGLLAAWLHFRMDYAGHT-EVRDTRRLRA 672
>gnl|CDD|116179 pfam07560, DUF1539, Domain of Unknown Function (DUF1539).
Length = 126
Score = 24.2 bits (53), Expect = 7.4
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 3 ESWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRP 46
+SW LE+ S + EW+ L Y + ED
Sbjct: 17 QSWKCLNRPLENNIHKLTSSLRREWFKILDYLSTKTSPEDESHE 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.447
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,139,669
Number of extensions: 302876
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 13
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.2 bits)