RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16530
         (81 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.056
 Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 28  YGWL--HYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTK 74
           Y +L    KT+      P      ++ +  +     N+ +  Y+ +R +
Sbjct: 91  YKFLMSPIKTEQ---RQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQ 135



 Score = 27.1 bits (59), Expect = 0.66
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 41  EDPGRPKYKWMAE--HTENFSGSNKQYVPYSSTRTKI 75
           E+  R  YK++     TE    S      Y   R ++
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRL 119


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.5 bits (52), Expect = 3.7
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 53 EHTENFSGSNKQYVPYSSTRTKIEA 77
          +  +    S K Y   S+    I+A
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44


>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase,
           mixed alpha/ protein, N-terminal rossmann-fold like;
           2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
          Length = 280

 Score = 24.4 bits (54), Expect = 5.2
 Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 2/25 (8%)

Query: 29  GWLHYKTDYLPHEDP-GRPKYKWMA 52
             L Y    +   DP G   Y W+ 
Sbjct: 188 AKLRYAQQVVERVDPRGVRYY-WLY 211


>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase,
           structural genomics, 3-D structure, mixed alpha/beta
           protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB:
           2wqk_A
          Length = 251

 Score = 24.0 bits (53), Expect = 5.7
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 29  GWLHYKTDYLPHEDP-GRPKYKWMA 52
           G   YK     + DP G+P Y W+A
Sbjct: 181 GKRAYKERVFKYIDPYGKPFY-WIA 204


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 23.9 bits (51), Expect = 9.1
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 57   NFSGSNKQYV 66
            N++  N+QYV
Sbjct: 1845 NYNVENQQYV 1854


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.131    0.447 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,297,245
Number of extensions: 59276
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 13
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.0 bits)