RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16530
         (81 letters)



>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT)
           {Escherichia coli [TaxId: 562]}
          Length = 311

 Score = 24.1 bits (52), Expect = 2.7
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)

Query: 1   MEESWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGR 45
           +E S       +       G  +      WLH +  + PH D  R
Sbjct: 252 IETSKGILSVPVPV-----GKFLLINNLFWLHGRDRFTPHPDLRR 291


>d2gica1 a.260.1.1 (A:2-422) Nucleoprotein {Vesicular stomatitis
           indiana virus [TaxId: 11277]}
          Length = 421

 Score = 23.2 bits (50), Expect = 5.1
 Identities = 4/21 (19%), Positives = 6/21 (28%)

Query: 21  SLVPAEWYGWLHYKTDYLPHE 41
                EW GW   +      +
Sbjct: 371 GRDVVEWLGWFEDQNRKPTPD 391


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.447 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,928
Number of extensions: 13699
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 7
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.1 bits)