BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16531
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 804
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 804
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 804
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 754 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 799
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 755 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 800
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 762 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 807
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 761 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 806
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 39/46 (84%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+VFF+AGVLG +E++RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 761 KVFFKAGVLGMLEDMRDERLSKIISMFQAHIRGYLMRKAYKKLQDQ 806
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 39/51 (76%)
Query: 23 YPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
+ +VFF+AG+LG +EE+RDD+L +I+ Q+ RG+L R EY+++ E+ +S
Sbjct: 759 HTKVFFKAGLLGLLEEMRDDKLAEIITRTQARCRGFLMRVEYRRMVERRES 809
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
VFF AG+LG +EE+RDD L +I+ Q+ RG+L R EY+ + E+ +S
Sbjct: 762 VFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERRES 809
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
VFF AG+LG +EE+RDD L +I+ Q+ RG+L R EY+ + E+ +S
Sbjct: 765 VFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERRES 812
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 12 EPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
E P+ +G+ ++FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 760 ELDPNLYRIGQ-SKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 12 EPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
E P+ +G+ ++FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 760 ELDPNLYRIGQ-SKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 12 EPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
E P+ +G+ ++FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 760 ELDPNLYRIGQ-SKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
++FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q +S
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLES 820
>pdb|3PN7|A Chain A, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|D Chain D, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|A Chain A, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|D Chain D, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|A Chain A, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
pdb|3TUY|D Chain D, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
Length = 69
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 29/35 (82%)
Query: 36 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 2 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 36
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
++FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3JTD|A Chain A, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|A Chain A, Calcium-Bound Scallop Myosin Regulatory Domain (Lever
Arm) With Reconstituted Complete Light Chains
Length = 65
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 39 LRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 1 MRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 32
>pdb|1WDC|A Chain A, Scallop Myosin Regulatory Domain
Length = 64
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 40 RDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQ 31
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQ 68
++FFRAG + +E++R D+L +Q +RG+L RK+Y +++
Sbjct: 748 KIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 791
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQS 71
++FFRAG + +E++R D+L +Q +RG+L RK+Y +++ +
Sbjct: 748 KIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAA 794
>pdb|1SCM|A Chain A, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 60
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 43 RLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 1 RLSKIISMFQAHIRGYLIRKAYKKLQDQ 28
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 23 YPQVFFRAGVLGQMEELRDDRLGK 46
+ +VFF+AG+LG +EE+RD+RL +
Sbjct: 760 HTKVFFKAGLLGLLEEMRDERLSR 783
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 25 QVFFRAGVLGQMEELRDDRLG 45
++FFRAG L ++EE R+ RLG
Sbjct: 743 KIFFRAGQLARIEEAREQRLG 763
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKI 47
++FFRAG L ++EE R+ R+ +I
Sbjct: 754 KIFFRAGQLARIEEAREQRISEI 776
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKI 47
++FFRAG L ++EE R+ R+ +I
Sbjct: 754 KIFFRAGQLARIEEAREQRISEI 776
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 31/73 (42%)
Query: 25 QVFFRAGVLGQMEELRDD---------RLGKIVGWM-------------------QSYMR 56
++FFRAGVL Q+EE R R ++V W+ QS+M
Sbjct: 739 KIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMN 798
Query: 57 GYLSRKEYKKIQE 69
+ KEYKK ++
Sbjct: 799 AH---KEYKKTEK 808
>pdb|2BL0|A Chain A, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 63
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 43 RLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
R+G+IV +Q+ RG++ RK +++ +E+S S
Sbjct: 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVS 32
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 25 QVFFRAGVLGQMEELRDDRL 44
++FFRAG L ++EE R+ RL
Sbjct: 742 KIFFRAGQLARIEEAREQRL 761
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 25 QVFFRAGVLGQMEELRDDRL 44
++FFRAG L ++EE R+ RL
Sbjct: 742 KIFFRAGQLARIEEAREQRL 761
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 25 QVFFRAGVLGQMEELRDDRL 44
++FFRAG L ++EE R+ RL
Sbjct: 754 KIFFRAGQLARIEEAREQRL 773
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 25 QVFFRAGVLGQMEELRDDRL 44
++FFRAG L ++EE R+ RL
Sbjct: 754 KIFFRAGQLARIEEAREQRL 773
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 12 EPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRL 44
E P+ +G+ ++FFR GVL +EE RD ++
Sbjct: 760 ELDPNLYRIGQ-SKIFFRTGVLAHLEEERDLKI 791
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 32 VLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPRVELKPSFNVTKD 91
+ +EEL++ GW Y R ++ +I ++ DLLNP+++ + + D
Sbjct: 495 IFNDIEELKEK------GW------SYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHD 542
Query: 92 TL 93
+
Sbjct: 543 DI 544
>pdb|3P3Q|A Chain A, Crystal Structure Of Mmoq Response Regulator From
Methylococcus Capsulatus Str. Bath At The Resolution
2.4a, Northeast Structural Genomics Consortium Target
Mcr175m
pdb|3P3Q|B Chain B, Crystal Structure Of Mmoq Response Regulator From
Methylococcus Capsulatus Str. Bath At The Resolution
2.4a, Northeast Structural Genomics Consortium Target
Mcr175m
Length = 283
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 16 DWSLLGRYPQVFFRAGVLGQMEELRDD-RLGKIV 48
DW +PQVF A L Q +E+RD+ R G+
Sbjct: 182 DWG----FPQVFIDALQLSQQDEIRDEGRTGRFA 211
>pdb|3LJX|A Chain A, Crystal Structure Of Mmoq Response Regulator (Fragment 20-
298) From Methylococcus Capsulatus Str. Bath, Northeast
Structural Genomics Consortium Target Mcr175g
Length = 288
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 16 DWSLLGRYPQVFFRAGVLGQMEELRDD-RLGKIV 48
DW +PQVF A L Q +E+RD+ R G+
Sbjct: 191 DWG----FPQVFIDALQLSQQDEIRDEGRTGRFA 220
>pdb|2WH8|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|B Chain B, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|C Chain C, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|D Chain D, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WHF|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
Length = 413
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 8 HFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRK 62
H+LG P DW+ + Q A + D VG M +Y G + R+
Sbjct: 160 HYLGVPEEDWTQFDGWTQAIVAANAVDGATTGALD----AVGSMMAYFTGLIERR 210
>pdb|2UUQ|A Chain A, Crystal Structure Of Cyp130 From Mycobacterium
Tuberculosis In The Ligand-Free Form
pdb|2UVN|A Chain A, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
pdb|2UVN|B Chain B, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
Length = 414
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 8 HFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRK 62
H+LG P DW+ + Q A + D VG M +Y G + R+
Sbjct: 161 HYLGVPEEDWTQFDGWTQAIVAANAVDGATTGALD----AVGSMMAYFTGLIERR 211
>pdb|2WGY|A Chain A, Crystal Structure Of The G243a Mutant Of Cyp130 From M.
Tuberculosis
Length = 413
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 8 HFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRK 62
H+LG P DW+ + Q A + D VG M +Y G + R+
Sbjct: 160 HYLGVPEEDWTQFDGWTQAIVAANAVDGATTGALD----AVGSMMAYFTGLIERR 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,322,515
Number of Sequences: 62578
Number of extensions: 120293
Number of successful extensions: 305
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 41
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)