Query psy16531
Match_columns 104
No_of_seqs 126 out of 1017
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:40:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.6 5.1E-16 1.1E-20 141.4 6.5 84 14-98 743-843 (1930)
2 COG5022 Myosin heavy chain [Cy 99.5 2.2E-14 4.8E-19 127.5 6.4 83 14-97 715-814 (1463)
3 KOG0164|consensus 99.3 2.1E-12 4.5E-17 109.8 5.4 68 15-86 666-737 (1001)
4 PTZ00014 myosin-A; Provisional 99.3 5.3E-12 1.1E-16 109.1 7.4 62 14-79 744-808 (821)
5 KOG0162|consensus 99.3 9E-12 2E-16 106.3 6.7 56 14-70 665-721 (1106)
6 KOG0160|consensus 98.7 2E-08 4.3E-13 87.2 6.7 59 17-79 646-704 (862)
7 PF00612 IQ: IQ calmodulin-bin 97.9 1.7E-05 3.7E-10 38.8 3.5 20 46-65 2-21 (21)
8 KOG0163|consensus 97.9 9.6E-06 2.1E-10 70.5 4.1 59 8-68 739-836 (1259)
9 cd01384 MYSc_type_XI Myosin mo 97.6 3.6E-05 7.8E-10 65.9 2.7 29 15-44 646-674 (674)
10 smart00015 IQ Short calmodulin 97.5 0.00014 3E-09 37.1 2.9 22 44-65 2-23 (26)
11 cd01378 MYSc_type_I Myosin mot 97.4 7.1E-05 1.5E-09 64.0 1.4 26 14-40 648-674 (674)
12 cd01383 MYSc_type_VIII Myosin 97.4 7.4E-05 1.6E-09 64.0 1.3 29 10-40 649-677 (677)
13 cd01386 MYSc_type_XVIII Myosin 97.3 7.3E-05 1.6E-09 64.9 1.1 26 14-40 742-767 (767)
14 cd01377 MYSc_type_II Myosin mo 97.2 0.00012 2.6E-09 62.8 1.4 25 15-40 669-693 (693)
15 smart00242 MYSc Myosin. Large 97.2 0.00015 3.2E-09 62.0 1.7 27 14-41 651-677 (677)
16 cd01382 MYSc_type_VI Myosin mo 97.2 0.00019 4E-09 61.9 2.3 25 14-39 691-715 (717)
17 cd01380 MYSc_type_V Myosin mot 97.2 0.00016 3.5E-09 62.0 1.7 26 14-40 666-691 (691)
18 cd01387 MYSc_type_XV Myosin mo 97.1 0.00018 4E-09 61.6 1.4 30 9-40 648-677 (677)
19 cd01381 MYSc_type_VII Myosin m 97.1 0.00022 4.7E-09 61.1 1.7 26 14-40 646-671 (671)
20 cd00124 MYSc Myosin motor doma 97.0 0.00032 6.9E-09 60.0 1.3 26 14-40 654-679 (679)
21 cd01379 MYSc_type_III Myosin m 96.7 0.00065 1.4E-08 58.1 1.5 25 15-40 629-653 (653)
22 cd01385 MYSc_type_IX Myosin mo 96.3 0.0026 5.6E-08 54.8 2.5 31 10-42 660-690 (692)
23 KOG0160|consensus 84.2 1.2 2.6E-05 39.8 3.5 19 44-62 695-713 (862)
24 KOG4427|consensus 81.0 3.1 6.7E-05 37.2 4.8 25 43-67 28-52 (1096)
25 KOG0377|consensus 74.7 6.9 0.00015 33.2 4.9 40 36-79 8-47 (631)
26 KOG0942|consensus 73.8 5.9 0.00013 35.8 4.5 37 43-79 27-64 (1001)
27 PF15157 IQ-like: IQ-like 61.2 10 0.00022 25.2 2.7 22 44-65 46-67 (97)
28 PTZ00014 myosin-A; Provisional 42.4 43 0.00094 30.0 4.4 22 42-63 797-818 (821)
29 PF05924 SAMP: SAMP Motif; In 28.4 20 0.00043 17.3 0.0 11 92-102 2-12 (20)
30 PF11430 EGL-1: Programmed cel 24.9 15 0.00031 18.0 -0.8 11 93-103 5-15 (21)
31 KOG0165|consensus 24.1 1.3E+02 0.0028 27.4 4.2 24 45-68 943-966 (1023)
32 KOG1419|consensus 22.7 95 0.0021 27.1 3.1 26 36-61 327-356 (654)
33 PF08763 Ca_chan_IQ: Voltage g 20.6 1.6E+02 0.0036 16.0 2.8 17 47-63 11-27 (35)
No 1
>KOG0161|consensus
Probab=99.62 E-value=5.1e-16 Score=141.41 Aligned_cols=84 Identities=37% Similarity=0.612 Sum_probs=79.7
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-------------- 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-------------- 79 (104)
+...|++| .||||||+|+++.||++|+..++.+++.+|+.||||++|+.|.+...+..|+.+||+
T Consensus 743 d~~lyriG-~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~ 821 (1930)
T KOG0161|consen 743 DKNLYRIG-HTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWW 821 (1930)
T ss_pred ccceEeec-ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 34569999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccccccccCccchhhhhhc
Q psy16531 80 ---VELKPSFNVTKDTLPIAIS 98 (104)
Q Consensus 80 ---~~ikplL~~~~~~~~~~~~ 98 (104)
.+|||||.+++++++++..
T Consensus 822 ~Lf~kvkPLL~~~~~ee~~~~~ 843 (1930)
T KOG0161|consen 822 RLFTKVKPLLKVTKTEEEMRAK 843 (1930)
T ss_pred HHHHHHHHHHHhhhhHHHHHHh
Confidence 8999999999999998763
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.51 E-value=2.2e-14 Score=127.54 Aligned_cols=83 Identities=24% Similarity=0.417 Sum_probs=75.3
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-------------- 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-------------- 79 (104)
|+..||+| +||||||+|+++.||++|+..++.+++.||++|||++.|++|........++..+|.
T Consensus 715 d~~~YqiG-~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~ 793 (1463)
T COG5022 715 DSSKYQIG-NTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKW 793 (1463)
T ss_pred Chhheecc-ceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHH
Confidence 45789999 999999999999999999999999999999999999999999998877777777777
Q ss_pred ---ccccccccCccchhhhhh
Q psy16531 80 ---VELKPSFNVTKDTLPIAI 97 (104)
Q Consensus 80 ---~~ikplL~~~~~~~~~~~ 97 (104)
.+++|++......++.+.
T Consensus 794 ~~~~~l~~~~~~~~~r~~~~~ 814 (1463)
T COG5022 794 RLFIKLQPLLSLLGSRKEYRS 814 (1463)
T ss_pred HhHHHhhHHhHHHhhHHHHHH
Confidence 788999999988887765
No 3
>KOG0164|consensus
Probab=99.31 E-value=2.1e-12 Score=109.85 Aligned_cols=68 Identities=28% Similarity=0.456 Sum_probs=58.8
Q ss_pred CCCceecCcCeeecc-cccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccccccc
Q psy16531 15 PDWSLLGRYPQVFFR-AGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR---VELKPSF 86 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r-~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~---~~ikplL 86 (104)
.+++.+| +||||+| +.+++.||+.|.+++..+++.||++||||++|.+|+++++ +..+|++ +|+|.++
T Consensus 666 ~~d~a~G-~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka---~~~ii~wyR~~K~ks~v 737 (1001)
T KOG0164|consen 666 AGDVAFG-RTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKA---SATIIRWYRRYKLKSYV 737 (1001)
T ss_pred chhhhcC-ceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3679999 9999999 5699999999999999999999999999999999999975 5556666 5555444
No 4
>PTZ00014 myosin-A; Provisional
Probab=99.30 E-value=5.3e-12 Score=109.06 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=55.8
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLG---KIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~---~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
++++|++| +||||||+|++..||+.|++++. .+++.||++||||++|++|.+++ .|+++||+
T Consensus 744 ~~~~~~iG-kTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~---~~~~~iQ~ 808 (821)
T PTZ00014 744 PKDSYAIG-KTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNI---KSLVRIQA 808 (821)
T ss_pred CcccEEec-CCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 35789999 99999999999999998888765 58899999999999999999974 48899999
No 5
>KOG0162|consensus
Probab=99.26 E-value=9e-12 Score=106.30 Aligned_cols=56 Identities=27% Similarity=0.542 Sum_probs=52.7
Q ss_pred CCCCceecCcCeeecc-cccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFR-AGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r-~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~ 70 (104)
++++||+| .||||+| +..|+.||++|++....+|..||++||.|++|++|.++|.+
T Consensus 665 ~~~qyQmG-~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree 721 (1106)
T KOG0162|consen 665 PSDQYQMG-VTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREE 721 (1106)
T ss_pred ChhHhhcc-ceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999 9999999 56999999999999999999999999999999999999864
No 6
>KOG0160|consensus
Probab=98.74 E-value=2e-08 Score=87.25 Aligned_cols=59 Identities=27% Similarity=0.502 Sum_probs=55.8
Q ss_pred CceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 17 WSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 17 ~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
.||+| +||||||+|....||..|...+...++.||+.+|||+.|+.|..+|. ++..||.
T Consensus 646 ~yq~g-~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~---~~~~~Q~ 704 (862)
T KOG0160|consen 646 LYQIG-KTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS---AVIIIQA 704 (862)
T ss_pred ceeee-eeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 89999 99999999999999999999999999999999999999999999754 7888888
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.94 E-value=1.7e-05 Score=38.75 Aligned_cols=20 Identities=60% Similarity=0.898 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy16531 46 KIVGWMQSYMRGYLSRKEYK 65 (104)
Q Consensus 46 ~~a~~iQ~~~RG~l~Rr~y~ 65 (104)
.+++.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999884
No 8
>KOG0163|consensus
Probab=97.93 E-value=9.6e-06 Score=70.47 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=42.9
Q ss_pred ccCCCCCCCCceecCcCeeecccccHHHHHHHHHHHhh---------------------------------------hHH
Q psy16531 8 HFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLG---------------------------------------KIV 48 (104)
Q Consensus 8 ~~~~~~~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~---------------------------------------~~a 48 (104)
+.|+++. .+|++| .||||||+|-.+...++-...-. ..+
T Consensus 739 ~aLgL~q-~DfkFG-lTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWkk~q~~a~sVIKLkNkI~yRae~v 816 (1259)
T KOG0163|consen 739 QALGLDQ-NDFKFG-LTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWKKSQYGALSVIKLKNKIIYRAECV 816 (1259)
T ss_pred HHhCCCc-cccccc-ceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhheeehhhHHHHHHHHH
Confidence 4566554 579999 99999999988766653322111 114
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16531 49 GWMQSYMRGYLSRKEYKKIQ 68 (104)
Q Consensus 49 ~~iQ~~~RG~l~Rr~y~~~r 68 (104)
+.+|+++|||++|+++....
T Consensus 817 ~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 817 LKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHHHhhhchHH
Confidence 88999999999999988753
No 9
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=97.62 E-value=3.6e-05 Score=65.87 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=26.3
Q ss_pred CCCceecCcCeeecccccHHHHHHHHHHHh
Q psy16531 15 PDWSLLGRYPQVFFRAGVLGQMEELRDDRL 44 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l 44 (104)
.++|++| +||||||+|+++.||+.|++.+
T Consensus 646 ~~~~~~G-ktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 646 LKGYQIG-KTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred CCCEEec-CeeEEEcCCHHHHHHHHHHhcC
Confidence 4679999 9999999999999999999754
No 10
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.49 E-value=0.00014 Score=37.15 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy16531 44 LGKIVGWMQSYMRGYLSRKEYK 65 (104)
Q Consensus 44 l~~~a~~iQ~~~RG~l~Rr~y~ 65 (104)
...+++.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3568899999999999999984
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=97.36 E-value=7.1e-05 Score=64.03 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCCceecCcCeeecccc-cHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAG-VLGQMEELR 40 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g-~l~~LE~~R 40 (104)
++++|++| +||||||+| +++.||++|
T Consensus 648 ~~~~~~~G-kTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 648 DPEEYQMG-KTKIFIRNPETLFALEEMR 674 (674)
T ss_pred CcccEEec-CceEEEeCchhHHHHHhcC
Confidence 45789999 999999997 899999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=97.35 E-value=7.4e-05 Score=64.02 Aligned_cols=29 Identities=34% Similarity=0.792 Sum_probs=24.9
Q ss_pred CCCCCCCCceecCcCeeecccccHHHHHHHH
Q psy16531 10 LGEPPPDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 10 ~~~~~~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
++++ +++|++| +||||||+|+++.||+.|
T Consensus 649 ~~~~-~~~~~~G-kTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 649 FNIL-PEMYQVG-YTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cCCC-cccEEec-cceEEecCcHHHHHhhcC
Confidence 4444 5789999 999999999999999876
No 13
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=97.34 E-value=7.3e-05 Score=64.89 Aligned_cols=26 Identities=46% Similarity=0.667 Sum_probs=23.6
Q ss_pred CCCCceecCcCeeecccccHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
++++|+|| +||||||+++++.||+.|
T Consensus 742 ~~~~~~iG-kTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 742 DKSSYRIG-HSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CcceEEee-cceEEecccHHHHHhccC
Confidence 35789999 999999999999999876
No 14
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=97.24 E-value=0.00012 Score=62.84 Aligned_cols=25 Identities=52% Similarity=0.922 Sum_probs=23.1
Q ss_pred CCCceecCcCeeecccccHHHHHHHH
Q psy16531 15 PDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
+++|++| +||||||++++..||+.|
T Consensus 669 ~~~~~~G-~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 669 PEQYRFG-HTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred cccEEec-CCeEeECccHHHHHhhcC
Confidence 5789999 999999999999999876
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=97.22 E-value=0.00015 Score=62.04 Aligned_cols=27 Identities=44% Similarity=0.690 Sum_probs=24.6
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRD 41 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~ 41 (104)
++++|++| +||||||+++++.||+.|+
T Consensus 651 ~~~~~~iG-kTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 651 DEDEYQLG-KTKVFLRPGQLAELEELRE 677 (677)
T ss_pred CcccEEec-CceEeECccHHHHHHhhcC
Confidence 35789999 9999999999999999885
No 16
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=97.21 E-value=0.00019 Score=61.93 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=22.5
Q ss_pred CCCCceecCcCeeecccccHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEEL 39 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~ 39 (104)
++++|++| +||||||+|+++.||..
T Consensus 691 ~~~~~~~G-kTKVFlr~g~~~~le~~ 715 (717)
T cd01382 691 NENDYKFG-LTKVFFRPGKFAEFDQI 715 (717)
T ss_pred CcccEEec-ceeEEecccHHHHHHHH
Confidence 35789999 99999999999999975
No 17
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=97.19 E-value=0.00016 Score=62.02 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=23.7
Q ss_pred CCCCceecCcCeeecccccHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
++++|++| +||||||++++..||+.|
T Consensus 666 ~~~~~~~G-~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 666 DEDKYQFG-KTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred CcccEEec-CceEEECcCHHHHHhhcC
Confidence 46789999 999999999999999876
No 18
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=97.13 E-value=0.00018 Score=61.61 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.2
Q ss_pred cCCCCCCCCceecCcCeeecccccHHHHHHHH
Q psy16531 9 FLGEPPPDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 9 ~~~~~~~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
.++++ +++|++| +||||||++++..||.+|
T Consensus 648 ~~~~~-~~~~~iG-~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 648 LCGVE-PPMYRVG-ASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HcCCC-cccEEec-ceeEEEcCCHHHHHHhcC
Confidence 34444 5689999 999999999999999876
No 19
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=97.11 E-value=0.00022 Score=61.10 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=23.6
Q ss_pred CCCCceecCcCeeecccccHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
++++|++| +||||||++++..||+.|
T Consensus 646 ~~~~~~~G-~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 646 ADDDWQLG-KTKVFLKDHHDLLLEQER 671 (671)
T ss_pred CcccEEec-cceEEECcCHHHHHhhcC
Confidence 46789999 999999999999999876
No 20
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=96.96 E-value=0.00032 Score=59.98 Aligned_cols=26 Identities=35% Similarity=0.664 Sum_probs=23.3
Q ss_pred CCCCceecCcCeeecccccHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
++++|++| +||||||++++..||+.|
T Consensus 654 ~~~~~~vG-kTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 654 PKDEWQVG-KTKVFLKEGQLSELEKMR 679 (679)
T ss_pred CccCEEec-CCeEEECcCHHHHHhccC
Confidence 35789999 999999999999999865
No 21
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=96.74 E-value=0.00065 Score=58.12 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCceecCcCeeecccccHHHHHHHH
Q psy16531 15 PDWSLLGRYPQVFFRAGVLGQMEELR 40 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r~g~l~~LE~~R 40 (104)
.++|++| +||||||++.++.||.+|
T Consensus 629 ~~~~~~G-ktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 629 LDNWALG-KTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred CCCEEec-ceEEEEecCHHHHHHhcC
Confidence 3579999 999999999999999865
No 22
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=96.31 E-value=0.0026 Score=54.78 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCCCCCCCceecCcCeeecccccHHHHHHHHHH
Q psy16531 10 LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDD 42 (104)
Q Consensus 10 ~~~~~~~~y~iGg~TKVF~r~g~l~~LE~~R~~ 42 (104)
++++ +++|++| +||||||++....||+.-.+
T Consensus 660 ~~~~-~~~~~iG-kTkVFlr~~~~~~Le~~~~~ 690 (692)
T cd01385 660 MKID-KRNYQIG-KTKIFMRETEKQALDETLHR 690 (692)
T ss_pred cCCC-cccEEee-CceEEEcccHHHHHHHHHhh
Confidence 3443 5689999 99999999999999986543
No 23
>KOG0160|consensus
Probab=84.19 E-value=1.2 Score=39.82 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy16531 44 LGKIVGWMQSYMRGYLSRK 62 (104)
Q Consensus 44 l~~~a~~iQ~~~RG~l~Rr 62 (104)
....++.||+.+||+++|+
T Consensus 695 ~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 695 LRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHhhhhhHHHHHH
Confidence 3344555555555555555
No 24
>KOG4427|consensus
Probab=80.95 E-value=3.1 Score=37.24 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16531 43 RLGKIVGWMQSYMRGYLSRKEYKKI 67 (104)
Q Consensus 43 ~l~~~a~~iQ~~~RG~l~Rr~y~~~ 67 (104)
+-..+|..||+.||||+.|++|+..
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999864
No 25
>KOG0377|consensus
Probab=74.66 E-value=6.9 Score=33.18 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 36 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 36 LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
-|-.+..+--.+|+.||+|.|+|.+|...++ +.+-.+.|.
T Consensus 8 t~~~~s~raikaAilIQkWYRr~~ARle~rr----r~twqIFqs 47 (631)
T KOG0377|consen 8 TELKKSTRAIKAAILIQKWYRRYEARLEARR----RCTWQIFQS 47 (631)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHhH
Confidence 4455666667889999999999999987654 335555565
No 26
>KOG0942|consensus
Probab=73.77 E-value=5.9 Score=35.85 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=26.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc
Q psy16531 43 RLGKIVGWMQSYMRGYLSRKEYKKI-QEQSQSDLLNPR 79 (104)
Q Consensus 43 ~l~~~a~~iQ~~~RG~l~Rr~y~~~-r~~~~A~~~IQ~ 79 (104)
+-...|+.+|+.||||.+|++.+.. |.+-.+...-++
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~ 64 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSR 64 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4456789999999999999997654 444445544444
No 27
>PF15157 IQ-like: IQ-like
Probab=61.20 E-value=10 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy16531 44 LGKIVGWMQSYMRGYLSRKEYK 65 (104)
Q Consensus 44 l~~~a~~iQ~~~RG~l~Rr~y~ 65 (104)
+..-+.+||++||-|++|.-..
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 4455788999999999987643
No 28
>PTZ00014 myosin-A; Provisional
Probab=42.37 E-value=43 Score=29.96 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHH
Q psy16531 42 DRLGKIVGWMQSYMRGYLSRKE 63 (104)
Q Consensus 42 ~~l~~~a~~iQ~~~RG~l~Rr~ 63 (104)
......++.||+.||||+.++.
T Consensus 797 ~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 797 RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445678999999999999864
No 29
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=28.43 E-value=20 Score=17.34 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=8.1
Q ss_pred hhhhhhccccc
Q psy16531 92 TLPIAISCDNN 102 (104)
Q Consensus 92 ~~~~~~~~~~~ 102 (104)
+++|...|+++
T Consensus 2 ~deiL~~CI~s 12 (20)
T PF05924_consen 2 EDEILQECIGS 12 (20)
T ss_dssp -HHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55888888876
No 30
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=24.92 E-value=15 Score=17.97 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=8.2
Q ss_pred hhhhhcccccC
Q psy16531 93 LPIAISCDNND 103 (104)
Q Consensus 93 ~~~~~~~~~~~ 103 (104)
..++.+|++||
T Consensus 5 ~kla~MCDdFD 15 (21)
T PF11430_consen 5 TKLAAMCDDFD 15 (21)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36778888876
No 31
>KOG0165|consensus
Probab=24.13 E-value=1.3e+02 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRKEYKKIQ 68 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~y~~~r 68 (104)
...++.||.++||+.+|++|+...
T Consensus 943 Kkaavviqkmirgfiarrkfqmei 966 (1023)
T KOG0165|consen 943 KKAAVVIQKMIRGFIARRKFQMEI 966 (1023)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999998753
No 32
>KOG1419|consensus
Probab=22.74 E-value=95 Score=27.13 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHHHHHH
Q psy16531 36 MEELRDDR----LGKIVGWMQSYMRGYLSR 61 (104)
Q Consensus 36 LE~~R~~~----l~~~a~~iQ~~~RG~l~R 61 (104)
=|+.|.+- ..-+|.+||.+||-|.+-
T Consensus 327 Qeq~RQKHf~rrr~pAA~LIQc~WR~yaa~ 356 (654)
T KOG1419|consen 327 QEQHRQKHFNRRRNPAASLIQCAWRYYAAE 356 (654)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHhcc
Confidence 35566553 345789999999977654
No 33
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=20.56 E-value=1.6e+02 Score=16.03 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16531 47 IVGWMQSYMRGYLSRKE 63 (104)
Q Consensus 47 ~a~~iQ~~~RG~l~Rr~ 63 (104)
++.+||-.||.+..|+.
T Consensus 11 At~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45689999998887764
Done!