Query psy16531
Match_columns 104
No_of_seqs 126 out of 1017
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:40:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kk8_A Myosin heavy chain, str 99.7 4.7E-18 1.6E-22 145.1 7.6 72 14-86 749-837 (837)
2 1i84_S Smooth muscle myosin he 99.6 8E-16 2.7E-20 134.4 8.4 83 14-97 762-861 (1184)
3 4anj_A Unconventional myosin-V 99.5 1.4E-14 4.7E-19 126.2 4.9 82 14-97 745-842 (1052)
4 1w7j_A Myosin VA; motor protei 99.4 1.7E-13 5.7E-18 116.7 6.9 55 14-69 738-792 (795)
5 2dfs_A Myosin-5A; myosin-V, in 99.4 2.7E-13 9.1E-18 118.3 7.5 62 14-79 738-799 (1080)
6 1wdc_A Scallop myosin; calcium 99.2 7.5E-12 2.6E-16 76.1 3.9 47 40-86 1-64 (64)
7 2bl0_A Major plasmodial myosin 99.1 5.8E-11 2E-15 72.0 4.0 45 43-87 2-63 (63)
8 1g8x_A Myosin II heavy chain f 98.5 3.1E-07 1.1E-11 80.0 7.5 47 14-61 733-779 (1010)
9 2ycu_A Non muscle myosin 2C, a 98.3 3.5E-08 1.2E-12 85.7 -1.6 32 15-47 730-761 (995)
10 2ix7_C Myosin-5A; contractIle 98.2 2.5E-06 8.6E-11 50.2 4.6 34 43-79 3-36 (58)
11 2v26_A Myosin VI; calmodulin-b 98.1 1.1E-06 3.8E-11 74.8 2.4 43 15-59 742-784 (784)
12 1n2d_C IQ2 and IQ3 motifs from 98.0 7.6E-06 2.6E-10 46.3 4.6 34 45-79 3-36 (48)
13 1w9i_A Myosin II heavy chain; 98.0 1.4E-06 4.7E-11 74.2 0.6 35 14-49 733-767 (770)
14 4db1_A Myosin-7; S1DC, cardiac 97.9 3.3E-06 1.1E-10 72.0 1.5 31 14-45 752-782 (783)
15 2ix7_C Myosin-5A; contractIle 97.9 4.8E-05 1.6E-09 44.6 6.0 39 36-74 19-57 (58)
16 1lkx_A Myosin IE heavy chain; 97.6 9.6E-06 3.3E-10 68.3 0.1 29 15-44 667-696 (697)
17 1n2d_C IQ2 and IQ3 motifs from 96.8 0.002 7E-08 36.0 4.4 20 45-64 28-47 (48)
18 2kxw_B Sodium channel protein 95.4 0.01 3.4E-07 30.2 2.3 18 45-62 6-23 (27)
19 2l53_B CAM, voltage-gated sodi 95.4 0.017 5.7E-07 30.3 3.2 19 45-63 6-24 (31)
20 3gn4_A Myosin-VI; unconvention 95.4 0.013 4.5E-07 40.9 3.5 22 46-67 46-67 (148)
21 2dfs_A Myosin-5A; myosin-V, in 95.0 0.046 1.6E-06 48.0 6.5 31 46-79 817-847 (1080)
22 4dck_A Sodium channel protein 76.1 4.1 0.00014 28.6 4.6 20 47-66 132-151 (168)
23 1kk8_A Myosin heavy chain, str 69.2 5.3 0.00018 34.3 4.5 24 45-68 805-828 (837)
24 1wdc_A Scallop myosin; calcium 64.5 15 0.00051 21.0 4.6 21 45-65 32-52 (64)
25 1i84_S Smooth muscle myosin he 38.4 27 0.00093 30.7 3.8 24 45-68 818-841 (1184)
No 1
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.73 E-value=4.7e-18 Score=145.10 Aligned_cols=72 Identities=47% Similarity=0.761 Sum_probs=68.3
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-------------- 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-------------- 79 (104)
++++|++| +||||||+|+++.||++|++++..+++.||++||||++|++|.+++.++.|+++||+
T Consensus 749 ~~~~~~~G-~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~ 827 (837)
T 1kk8_A 749 DPAEYRLG-TTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWW 827 (837)
T ss_dssp CGGGEEEC-SSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred Cccceeec-CEEEEehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence 35789999 999999999999999999999999999999999999999999999998999999999
Q ss_pred ---ccccccc
Q psy16531 80 ---VELKPSF 86 (104)
Q Consensus 80 ---~~ikplL 86 (104)
.+|||||
T Consensus 828 ~l~~kvkpll 837 (837)
T 1kk8_A 828 KLYSKVKPLL 837 (837)
T ss_dssp HHHHHHGGGC
T ss_pred HHHhhhccCC
Confidence 7888986
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.61 E-value=8e-16 Score=134.40 Aligned_cols=83 Identities=31% Similarity=0.512 Sum_probs=76.4
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-------------- 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-------------- 79 (104)
+++.|+|| +||||||+|+++.||+.|+..+..+++.||++||||++|++|.+++.++.|+++||+
T Consensus 762 ~~~~~~iG-~TKVF~r~g~l~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~ 840 (1184)
T 1i84_S 762 DPNLYRIG-QSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWM 840 (1184)
T ss_dssp CTTTCCBC-SSEEEECTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccceeEc-CeEEEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45789999 999999999999999999999999999999999999999999999988999999998
Q ss_pred ---ccccccccCccchhhhhh
Q psy16531 80 ---VELKPSFNVTKDTLPIAI 97 (104)
Q Consensus 80 ---~~ikplL~~~~~~~~~~~ 97 (104)
.+++|++...+.+++++.
T Consensus 841 rl~~klkpLl~~a~~~~El~~ 861 (1184)
T 1i84_S 841 XLFFXIXPLLKVTRQEEEMQA 861 (1184)
T ss_dssp HHHHHHTTTCCCCTHHHHCCH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 578999998877776654
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.49 E-value=1.4e-14 Score=126.23 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-------------- 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-------------- 79 (104)
++++|++| +||||||+|+++.||++|+..+..+++.||+ +|||++|++|++++....+++.+|+
T Consensus 745 ~~~~y~iG-~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~~~w~~ 822 (1052)
T 4anj_A 745 NEIDYKFG-LTKVFFRPGKFAEFDQIMKSDPDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAVSKGEE 822 (1052)
T ss_dssp CGGGEEEC-SSEEEECTTCHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEec-CCEEeeCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 35789999 9999999999999999999999999988885 7999999999998654334433334
Q ss_pred --ccccccccCccchhhhhh
Q psy16531 80 --VELKPSFNVTKDTLPIAI 97 (104)
Q Consensus 80 --~~ikplL~~~~~~~~~~~ 97 (104)
.+++|||...+...+.+.
T Consensus 823 l~~~v~pll~~~~~~~~~r~ 842 (1052)
T 4anj_A 823 LFTGVVPILVELDGDVNGHK 842 (1052)
T ss_dssp TTSSCEEEEEEEEEEETTEE
T ss_pred HHHhhhhhHHHHHHHHHhhh
Confidence 689999999998887665
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.42 E-value=1.7e-13 Score=116.68 Aligned_cols=55 Identities=33% Similarity=0.599 Sum_probs=52.4
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~ 69 (104)
++++|++| +||||||+|+++.||++|++++..+++.||++||||++|++|.++|.
T Consensus 738 ~~~~~~~G-~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 738 DKDKYQFG-KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp CGGGEEEC-SSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccceEEc-CceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999 99999999999999999999999999999999999999999999874
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.41 E-value=2.7e-13 Score=118.31 Aligned_cols=62 Identities=31% Similarity=0.559 Sum_probs=56.2
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
++++|++| +||||||+|+++.||+.|+..+..+++.||+.||||++|++|.+++ .|++.||+
T Consensus 738 ~~~~~~~G-~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r---~aai~IQ~ 799 (1080)
T 2dfs_A 738 DKDKYQFG-KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR---RAAITIQR 799 (1080)
T ss_dssp CGGGEEEC-SSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred Chhhheec-cccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHH
Confidence 46789999 9999999999999999999999999999999999999999999874 36666666
No 6
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=99.22 E-value=7.5e-12 Score=76.15 Aligned_cols=47 Identities=45% Similarity=0.704 Sum_probs=44.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------ccccccc
Q psy16531 40 RDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-----------------VELKPSF 86 (104)
Q Consensus 40 R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-----------------~~ikplL 86 (104)
||+.+..+++.+|+.+|||++|+.|.++..++.|+.+||+ .+|||||
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l~~kikPll 64 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 64 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhcCC
Confidence 5788999999999999999999999999999999999999 7889986
No 7
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=99.11 E-value=5.8e-11 Score=72.03 Aligned_cols=45 Identities=29% Similarity=0.522 Sum_probs=41.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------cccccccc
Q psy16531 43 RLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR-----------------VELKPSFN 87 (104)
Q Consensus 43 ~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~-----------------~~ikplL~ 87 (104)
+++.+++.+|+.+|||++|+.|.++..++.|+.+||+ .+|||||+
T Consensus 2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~L~~kikPLL~ 63 (63)
T 2bl0_A 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLFAKARPLLV 63 (63)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhccC
Confidence 5678899999999999999999999999999999999 78899985
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=98.46 E-value=3.1e-07 Score=79.96 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=40.8
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSR 61 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l~R 61 (104)
++++|++| +||||||+|+++.||++|++++..+++.||-..++...+
T Consensus 733 ~~~~~~~G-~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~a~~L~ 779 (1010)
T 1g8x_A 733 DPEQYRFG-ITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELV 779 (1010)
T ss_dssp CGGGEEEC-SSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccceeeh-hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999 999999999999999999999999999999766655433
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=98.33 E-value=3.5e-08 Score=85.68 Aligned_cols=32 Identities=44% Similarity=0.690 Sum_probs=29.4
Q ss_pred CCCceecCcCeeecccccHHHHHHHHHHHhhhH
Q psy16531 15 PDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKI 47 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~ 47 (104)
+++|++| +||||||+|+++.||++|++++...
T Consensus 730 ~~~~~~G-~tkVF~r~~~~~~LE~~R~~~l~~~ 761 (995)
T 2ycu_A 730 PNLYRVG-QSKIFFRAGVLAQLEEERASEQTKS 761 (995)
T ss_dssp ESSEEEE-SSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeec-ceEEEEecchhhhHHHHHHHHhhhh
Confidence 5689999 9999999999999999999988764
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.17 E-value=2.5e-06 Score=50.23 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=25.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 43 RLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 43 ~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
.+...++.||+.||||++|+.|.+++ .|++.||+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r---~aai~IQ~ 36 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ---RAAITVQR 36 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45667788888888888888888765 37777777
No 11
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=98.08 E-value=1.1e-06 Score=74.85 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=35.6
Q ss_pred CCCceecCcCeeecccccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy16531 15 PDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYL 59 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~~iQ~~~RG~l 59 (104)
+++|++| +||||||+|+++.||.++.......+. |++.+|||+
T Consensus 742 ~~~~~~G-~TKVF~r~g~~~~le~~~~~~~~~~~~-ii~~v~~wl 784 (784)
T 2v26_A 742 EIDYKFG-LTKVFFRPGKFAEFDQIMKSDPDHLAE-LVKRVNHWL 784 (784)
T ss_dssp GGGEEEC-SSEEEECTTCHHHHHHHHCCCHHHHHH-HHHHHHHHC
T ss_pred cCcEEeC-CceEEEcCCHHHHHHHHHhhCHHHHHH-HHHHHHhhC
Confidence 5789999 999999999999999988766665555 557788884
No 12
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.03 E-value=7.6e-06 Score=46.31 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 45 GKIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
...++.||+.|||+++|+.|..++. ..|++.||+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~-~~aai~IQ~ 36 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMK-VNCATLLQA 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4578999999999999999998764 357789998
No 13
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=97.95 E-value=1.4e-06 Score=74.22 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=17.7
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhhhHHH
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVG 49 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~~~a~ 49 (104)
++++|++| +||||||+|+++.||++|++++..+++
T Consensus 733 ~~~~~~~G-~TKVF~r~~~l~~LE~~R~~~l~~~~~ 767 (770)
T 1w9i_A 733 DPEQFRFG-ITKIFFRAGQLARIEEARELRGDYKDD 767 (770)
T ss_dssp ---CCCCC-SSEEEECTTTTTC--------------
T ss_pred CcccEEeC-CeeEEecccHHHHHHHHHHHHHHHHhc
Confidence 35789999 999999999999999999999988765
No 14
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=97.87 E-value=3.3e-06 Score=72.02 Aligned_cols=31 Identities=45% Similarity=0.813 Sum_probs=24.3
Q ss_pred CCCCceecCcCeeecccccHHHHHHHHHHHhh
Q psy16531 14 PPDWSLLGRYPQVFFRAGVLGQMEELRDDRLG 45 (104)
Q Consensus 14 ~~~~y~iGg~TKVF~r~g~l~~LE~~R~~~l~ 45 (104)
++++|++| +||||||+|+++.||++|+++++
T Consensus 752 ~~~~~~~G-~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 752 DHNQYKFG-HTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp CGGGEEEC-SSEEEECTTHHHHHHHHC-----
T ss_pred CcCeEEEC-CEEEEECcCHHHHHHHHHHHHhc
Confidence 35789999 99999999999999999999875
No 15
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.85 E-value=4.8e-05 Score=44.60 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16531 36 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQSD 74 (104)
Q Consensus 36 LE~~R~~~l~~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~ 74 (104)
+...+-..+...++.||+.||||++|+.|..++.+..|+
T Consensus 19 ~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 19 LLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 444555566788999999999999999999998766553
No 16
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=97.59 E-value=9.6e-06 Score=68.35 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCceecCcCeeecccc-cHHHHHHHHHHHh
Q psy16531 15 PDWSLLGRYPQVFFRAG-VLGQMEELRDDRL 44 (104)
Q Consensus 15 ~~~y~iGg~TKVF~r~g-~l~~LE~~R~~~l 44 (104)
+++|++| +||||||++ +++.||++|++++
T Consensus 667 ~~~~~~G-~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 667 KEEIRMG-KTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp GGGEEEC-SSBEEESSSHHHHHHHTCC----
T ss_pred cCcEEeC-CeeEEEeCCchHHHHHHHHHhhC
Confidence 5789999 999999985 8999999999876
No 17
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.002 Score=35.98 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRKEY 64 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~y 64 (104)
...++.||+.||||++|+.|
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhh
Confidence 35899999999999999987
No 18
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.44 E-value=0.01 Score=30.24 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRK 62 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr 62 (104)
+.+|+.||.+||+|+.++
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457899999999999875
No 19
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.41 E-value=0.017 Score=30.33 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRKE 63 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~ 63 (104)
+.+|+.||.+||+|+.++.
T Consensus 6 e~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999865
No 20
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.39 E-value=0.013 Score=40.87 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy16531 46 KIVGWMQSYMRGYLSRKEYKKI 67 (104)
Q Consensus 46 ~~a~~iQ~~~RG~l~Rr~y~~~ 67 (104)
..++.||+.+|||++|++|.-.
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 4569999999999999999864
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.97 E-value=0.046 Score=48.03 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16531 46 KIVGWMQSYMRGYLSRKEYKKIQEQSQSDLLNPR 79 (104)
Q Consensus 46 ~~a~~iQ~~~RG~l~Rr~y~~~r~~~~A~~~IQ~ 79 (104)
.+|+.||++||||.+|+.|.+++ .|++.||+
T Consensus 817 ~AAi~IQs~~Rg~~~Rk~y~~lr---~aai~IQs 847 (1080)
T 2dfs_A 817 RAAIIIQKFQRMYVVRKRYQCMR---DATIALQA 847 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHH---HHHHHHHH
Confidence 44556666666666666665553 35556665
No 22
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=76.14 E-value=4.1 Score=28.59 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16531 47 IVGWMQSYMRGYLSRKEYKK 66 (104)
Q Consensus 47 ~a~~iQ~~~RG~l~Rr~y~~ 66 (104)
+|..||.+||+|..|+.+..
T Consensus 132 aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 132 SAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 57999999999998877655
No 23
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=69.18 E-value=5.3 Score=34.31 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRKEYKKIQ 68 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~y~~~r 68 (104)
..+++.||+.||||++|+.+.-++
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~w~~ 828 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQWWK 828 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchHHHH
Confidence 467899999999999999877665
No 24
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=64.52 E-value=15 Score=20.98 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRKEYK 65 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~y~ 65 (104)
..++..||..+|+|+.++.+.
T Consensus 32 ~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 32 RIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhhcCCh
Confidence 445669999999999987643
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=38.36 E-value=27 Score=30.67 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy16531 45 GKIVGWMQSYMRGYLSRKEYKKIQ 68 (104)
Q Consensus 45 ~~~a~~iQ~~~RG~l~Rr~y~~~r 68 (104)
...++.||+.||+|+.++.|..++
T Consensus 818 ~~a~~~iQ~~~r~~~~~k~~~~~r 841 (1184)
T 1i84_S 818 LESIFCIQYNVRSFMNVXHWPWMX 841 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 357789999999999998765443
Done!