RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16531
(104 letters)
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 70.4 bits (173), Expect = 6e-16
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIG 807
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 68.4 bits (168), Expect = 3e-15
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
+FFRAG + +E++R D+L +Q +RG+L RK+Y +++
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 64.7 bits (158), Expect = 6e-14
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
+FFRAG + +E++R D+L +Q +RG+L RK+Y +++
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 61.4 bits (149), Expect = 1e-12
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q +S
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLES 820
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 60.1 bits (146), Expect = 3e-12
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 26 VFFRAGVLGQMEELRDDRLGK--IVGWMQSYMRGYLSRKEYKKIQEQSQS 73
+FFRAGVL Q+EE R K + ++ ++ + ++ S
Sbjct: 740 IFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDS 789
Score = 27.3 bits (61), Expect = 1.0
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 25 QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 70
Q F A + ++ G+ V +++ ++ K +
Sbjct: 794 QSFMNAHK--EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPF 837
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 58.1 bits (141), Expect = 2e-11
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQ 72
+FFRAG L ++EE R+ RLG R + Q +
Sbjct: 744 IFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLE 790
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 46.3 bits (110), Expect = 2e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 40 RDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
RD+RL KI+ Q+++RGYL RK YKK+Q+Q
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIG 34
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 46.1 bits (110), Expect = 3e-07
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 26 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYL 59
VFFR G + +++ + ++ + +L
Sbjct: 752 VFFRPGKFAEFDQIMKSDPDHLAELVKR-VNHWL 784
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 42.4 bits (100), Expect = 4e-07
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 43 RLGKIVGWMQSYMRGYLSRKEYKKIQEQSQS 73
R+G+IV +Q+ RG++ RK +++ +E+S S
Sbjct: 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVS 32
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 42.3 bits (100), Expect = 6e-06
Identities = 13/21 (61%), Positives = 19/21 (90%)
Query: 26 VFFRAGVLGQMEELRDDRLGK 46
VFF+AG+LG +EE+RD+RL +
Sbjct: 763 VFFKAGLLGLLEEMRDERLSR 783
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 10 LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIV 48
L P + G ++FFRAG L ++EE R+ R
Sbjct: 730 LNIDPEQFRF-GI-TKIFFRAGQLARIEEARELRGDYKD 766
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 34.4 bits (80), Expect = 0.003
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 26 VFFR-AGVLGQMEELRDDRL 44
VF R L EE R+ +
Sbjct: 677 VFIRNPTTLFYFEEKRELEM 696
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ
motif, acetylation; 2.5A {Mus musculus}
Length = 58
Score = 31.8 bits (73), Expect = 0.005
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 51 MQSYMRGYLSRKEYKKIQEQ 70
+Q Y+RGY +R K ++
Sbjct: 34 VQRYVRGYQARCYAKFLRRT 53
Score = 31.0 bits (71), Expect = 0.012
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 42 DRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
D+L +Q +RG+L RK Y +Q
Sbjct: 2 DKLRAACIRIQKTIRGWLLRKRYLCMQR 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.60
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 8 HFLGEPPPD-------WSLLGRYPQVFFRAGVLGQMEE-LRDDRLGKIVGWMQSYMRGYL 59
H + W+LL + ++ + +EE LR + ++ S ++
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-----VEEVLRIN-----YKFLMSPIKTEQ 102
Query: 60 SRKEYKKIQEQSQSDLLNPRVELKPSFNVTK 90
+ Q D L ++ +NV++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Score = 27.9 bits (61), Expect = 0.67
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 51 MQSYMRGYLSRKEYKKI----QEQSQSDLLNPRVELKPS 85
+Q + LS++E I S + L + K
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.84
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 21/42 (50%)
Query: 61 RKEYKKIQEQSQSDLLNPRVELK---PSFNVTKDTLP-IAIS 98
++ KK+ + S LK D+ P +AI
Sbjct: 19 KQALKKL-QAS----------LKLYAD------DSAPALAIK 43
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 27.5 bits (60), Expect = 0.99
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 2 VALYGTHFLGEPPPDWSLLGRYPQ---VFFRAGVLGQMEELRDDRLGKIVGW 50
+ L+ + G+ P DW R + R +L ++E+ G + W
Sbjct: 731 MELHKKYLGGKEPEDWWKFVRTEADLPLATREALLKELEK----EHGWEIDW 778
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription,
CTD, SET2 histone methyltransferase; NMR {Saccharomyces
cerevisiae}
Length = 104
Score = 25.4 bits (55), Expect = 2.5
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 36 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQS 71
++L + K+ ++ SYM + +K+ KK S
Sbjct: 68 PDDLTKGKRHKVKEFINSYMDKIILKKKQKKALGLS 103
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 25.6 bits (56), Expect = 3.4
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 1 MVALYGTHFLGEPPPDWSLLGRYPQVFF-RAGVLGQMEELRDDRL 44
++ L LG+ P + G+Y + FF + G L + +L+ L
Sbjct: 311 IIEL-----LGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGL 350
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix
bundle, actin-binding, ATP-binding, calmodulin-binding,
coiled coil; 2.70A {Sus scrofa}
Length = 148
Score = 25.4 bits (55), Expect = 3.7
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 51 MQSYMRGYLSRKEYKK 66
MQ +R +L ++ +K
Sbjct: 51 MQKTIRMWLCKRRHKP 66
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane
protein, E. coli, cell inner membrane, cell membrane,
chaperone, electron transport, membrane; HET: UQ1; 3.30A
{Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B*
2k73_A 2k74_A*
Length = 176
Score = 25.4 bits (55), Expect = 3.9
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 1 MVALYGTHFLGEPPPDWSLLGRYP-QVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYL 59
+ AL+ H + P + R A ++G + R +V W+ S RG
Sbjct: 27 LTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQ 86
Query: 60 SRKEYKKIQEQSQS----DLLNPRVELKPSFNVTKDTLPIAISCDN 101
E+ +Q D + E P + C
Sbjct: 87 LTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAE 132
>2owl_A Recombination-associated protein RDGC; replication, RECA; 2.40A
{Escherichia coli}
Length = 303
Score = 24.9 bits (54), Expect = 5.5
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 59 LSRKEYKKIQEQSQSDLLNPRVELKPS 85
L + E ++++ LL PR + S
Sbjct: 99 LKKTEKDSLKDEVLHSLL-PRAFSRFS 124
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI,
protein structure INI midwest center for structural
genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Length = 131
Score = 24.1 bits (53), Expect = 8.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 1 MVALYGTHFLGEPPPDWSLLG 21
++ + F P P+W+ +G
Sbjct: 91 IMTVKNEIFSAPPYPNWTAVG 111
>2owy_A Recombination-associated protein RDGC; homologous recombination,
RECA shaped DNA binding proteins, DNA binding protein;
2.50A {Pseudomonas aeruginosa}
Length = 306
Score = 24.5 bits (53), Expect = 9.0
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 59 LSRKEYKKIQEQSQSDLLNPRVELKPS 85
+ +KE +++++ LL PR ++ S
Sbjct: 99 VYKKERDQLKDEIVQTLL-PRAFIRRS 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.427
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,670,061
Number of extensions: 87782
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 34
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)