RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16531
         (104 letters)



>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 67.4 bits (164), Expect = 3e-15
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 10  LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
                  +   G   +VFF+AG+LG +EE+RDD+L +I+   Q+  RG+L R EY+ + E
Sbjct: 702 GDVDHTQY-AFGHT-KVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVE 759

Query: 70  QSQS 73
           + +S
Sbjct: 760 RRES 763


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 66.3 bits (161), Expect = 8e-15
 Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 10  LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
           L   P ++  LG   +VFF+AGVLG +EE+RD+RL KI+   Q+++RGYL RK YKK+Q+
Sbjct: 698 LQMDPAEY-RLGTT-KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQD 755

Query: 70  QSQS 73
           Q   
Sbjct: 756 QRIG 759


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 10  LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQ 68
           L      +   G+  ++FFRAG +  +E++R D+L      +Q  +RG+L RK+Y +++
Sbjct: 673 LILDKDKY-QFGKT-KIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 729


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 35.4 bits (81), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 10  LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRD 41
           L   P  +   G   ++FFRAG L ++EE R+
Sbjct: 683 LNIDPEQY-RFGIT-KIFFRAGQLARIEEARE 712


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 35.1 bits (80), Expect = 7e-04
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 10  LGEPPPDWSLLGRYPQVFFRAGVLGQMEELRD 41
           L   P  +  +G+  ++FFR GVL  +EE RD
Sbjct: 681 LELDPNLY-RIGQS-KIFFRTGVLAHLEEERD 710


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 27.7 bits (61), Expect = 0.22
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)

Query: 10  LGEPPPDWSLLGRYPQVFFR-AGVLGQMEELR 40
                 +   +G+  +VF R    L   EE R
Sbjct: 655 HNIDKEEI-RMGKT-KVFIRNPTTLFYFEEKR 684


>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
          {Thermus thermophilus, strain hb27 [TaxId: 274]}
          Length = 311

 Score = 27.8 bits (61), Expect = 0.25
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 33 LGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 69
          L +     + R+ ++ G     ++G L+  E   ++ 
Sbjct: 29 LMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRF 65


>d1q7ha2 d.17.6.2 (A:3-68) Hypothetical protein Ta1423, N-terminal
          domain {Archaeon Thermoplasma acidophilum [TaxId:
          2303]}
          Length = 66

 Score = 23.9 bits (51), Expect = 2.6
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 56 RGYLSRKEYKKIQEQSQS---DLLNPRVELKPSFNVT 89
          + ++S+KE K+I EQ      D+    +E+    + +
Sbjct: 2  KHFISKKEAKRIWEQMSRYGIDITGESLEVAAQKSAS 38


>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein
          DsbB {Escherichia coli [TaxId: 562]}
          Length = 149

 Score = 23.9 bits (51), Expect = 4.0
 Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)

Query: 2  VALYGTHFLGEPPPDWSLLGRYPQVFFRAGVLGQMEELRDDRLGKIVGWM 51
           AL+  H +   P    +  R     F       +  +      + V  +
Sbjct: 15 TALWFQHVMLLKPCVLCIYERVA--LFGVLGAALIGAIAPKTPLRYVAMV 62


>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
           1280]}
          Length = 235

 Score = 23.4 bits (50), Expect = 6.6
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 16/60 (26%)

Query: 60  SRKEYKKIQEQSQSDLLNPRVELKPSF----NVTKDT------------LPIAISCDNND 103
            R  Y+K+Q++ Q  +   +  ++P F     + KD              P+     N+D
Sbjct: 26  ERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHD 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,468
Number of extensions: 17675
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 10
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)