BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16532
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
Length = 138
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 41 TDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
T +LKFGTLVGVDK+GN+YYEN+ YGR+RWV Y
Sbjct: 26 TGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEY 60
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
RT+D K GTLVG DK GNKYYE+ F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
RT+D K GTLVG DK GNKYYE+ F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Homo sapiens GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
RT+D K GTLVG DK GNKYYE+ F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
RT+D K GTLVG DK GNKYYE+ F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3
SV=2
Length = 146
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 42 DDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
D + GTLVG D GN+YYEN YF RNRWV + +K L+YD
Sbjct: 36 DATRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYD 78
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Mus musculus GN=Ndufa12 PE=1 SV=2
Length = 145
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
R +D++ GTLVG DK GNKYYE+ F+GR+RWV+Y
Sbjct: 29 RANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Bos taurus GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
R +D++ GTLVG DK GNKYYE+ F+GR+RWV+Y
Sbjct: 29 RANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1
SV=1
Length = 159
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 48 TLVGVDKLGNKYYENKH-YFYGRNRWVVYHEK 78
TLVGVDK GNKYY+ YGR+RWV Y K
Sbjct: 50 TLVGVDKFGNKYYQKLGDTQYGRHRWVEYASK 81
>sp|Q9UA35|S28A3_EPTST Solute carrier family 28 member 3 OS=Eptatretus stoutii GN=SLC28A3
PE=2 SV=1
Length = 683
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 51 GVDKLGNKYYENKHYFYGRNRWVVYHEKFGL 81
V++ NK+Y H FY RN+ ++++ GL
Sbjct: 73 AVERCVNKFYGGIHNFYKRNKKIIHYTFLGL 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,257,329
Number of Sequences: 539616
Number of extensions: 1233691
Number of successful extensions: 2633
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2621
Number of HSP's gapped (non-prelim): 12
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)