Query psy16532
Match_columns 84
No_of_seqs 104 out of 375
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 23:41:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3382|consensus 99.7 1.4E-18 3E-23 125.6 3.6 58 27-84 27-84 (151)
2 PLN02732 Probable NADH dehydro 99.7 7.7E-17 1.7E-21 117.4 5.2 50 30-79 17-82 (159)
3 PLN03095 NADH:ubiquinone oxido 99.6 5E-16 1.1E-20 108.2 4.3 40 40-79 3-42 (115)
4 PRK06630 hypothetical protein; 99.6 1.5E-15 3.3E-20 104.0 3.2 40 40-79 6-47 (99)
5 PRK08183 NADH dehydrogenase; V 99.5 3.7E-15 8.1E-20 105.7 3.6 52 28-79 7-61 (133)
6 PF05071 NDUFA12: NADH ubiquin 99.4 1.2E-13 2.6E-18 93.0 4.1 33 47-79 1-34 (105)
7 COG3761 NADH:ubiquinone oxidor 99.1 1.4E-11 3.1E-16 86.4 1.5 36 45-80 11-48 (118)
8 PF15613 WHIM2: WSTF, HB1, Itc 93.8 0.029 6.3E-07 32.5 1.0 15 48-62 3-17 (38)
9 PF11385 DUF3189: Protein of u 42.3 19 0.00042 25.7 1.9 19 45-63 48-68 (148)
10 cd01717 Sm_B The eukaryotic Sm 41.2 17 0.00036 22.8 1.3 18 45-62 23-40 (79)
11 PF06739 SBBP: Beta-propeller 34.7 31 0.00067 19.1 1.6 17 46-62 14-30 (38)
12 cd06168 LSm9 The eukaryotic Sm 33.6 26 0.00057 22.3 1.3 19 45-63 23-41 (75)
13 smart00651 Sm snRNP Sm protein 31.7 28 0.0006 20.4 1.1 21 43-63 19-39 (67)
14 cd00600 Sm_like The eukaryotic 27.4 42 0.0009 19.3 1.3 22 43-64 17-38 (63)
15 cd01727 LSm8 The eukaryotic Sm 26.4 40 0.00086 20.9 1.2 20 45-64 22-41 (74)
16 smart00604 MD MD domain. 24.5 49 0.0011 24.2 1.5 12 48-59 131-142 (145)
17 cd01729 LSm7 The eukaryotic Sm 23.1 51 0.0011 21.0 1.2 18 44-61 24-41 (81)
18 smart00456 WW Domain with 2 co 21.8 1.3E+02 0.0027 15.2 3.0 27 47-75 4-30 (32)
19 TIGR00723 ttdB_fumA_fumB hydro 21.6 50 0.0011 24.5 1.1 26 36-61 141-167 (168)
20 KOG0909|consensus 21.2 40 0.00086 29.1 0.6 67 3-75 199-266 (500)
21 COG1838 FumA Tartrate dehydrat 21.0 35 0.00076 25.9 0.2 38 26-63 138-176 (184)
22 PRK08395 fumarate hydratase; P 20.4 54 0.0012 24.2 1.0 26 36-61 137-162 (162)
No 1
>KOG3382|consensus
Probab=99.73 E-value=1.4e-18 Score=125.62 Aligned_cols=58 Identities=55% Similarity=0.898 Sum_probs=54.9
Q ss_pred cccchhHHHhhhhccCccccceEEeecCCCCEEeeeCCCCCCcccEEEeCCccccccC
Q psy16532 27 RCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84 (84)
Q Consensus 27 ~c~~~~~~~~~L~r~~t~k~G~lVG~D~fGNKYYE~~~~~~GRrRWViY~~~~~~~Yd 84 (84)
.=||-+.++..|++..+.+.|+|||+|.|||||||++.++.||+|||+|+.+.+|+||
T Consensus 27 e~Gglr~~~~k~yrtd~~kiGTLVG~DkfGNkYyen~~~fygRhRWVeya~kv~~Dyd 84 (151)
T KOG3382|consen 27 EEGGLRCLLDKLYRTDDHKIGTLVGVDKFGNKYYENNDYFYGRHRWVEYASKVNWDYD 84 (151)
T ss_pred hhccHHHHHHHHHhcccccceeeeeecccccchhcccceecccceeEEeccccccccc
Confidence 3478889999999999999999999999999999999989999999999999999997
No 2
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
Probab=99.66 E-value=7.7e-17 Score=117.37 Aligned_cols=50 Identities=44% Similarity=0.645 Sum_probs=45.2
Q ss_pred chhHHHhhhhccCccc-----------c----ceEEeecCCCCEEeeeCC-CCCCcccEEEeCCcc
Q psy16532 30 DRYDSSESSDRTDDLK-----------F----GTLVGVDKLGNKYYENKH-YFYGRNRWVVYHEKF 79 (84)
Q Consensus 30 ~~~~~~~~L~r~~t~k-----------~----G~lVG~D~fGNKYYE~~~-~~~GRrRWViY~~~~ 79 (84)
|+.+++++|++++++| . |+|||+|+|||||||++. ...||+|||||+++.
T Consensus 17 G~~~~~~~l~~~g~~k~~~~g~t~gt~~~~~~G~lVG~D~~GNkYYE~~~~~~~grrRWV~Y~~~~ 82 (159)
T PLN02732 17 GLGGFLRMLREEGYLRCLADGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEKS 82 (159)
T ss_pred hHHHHHHHHHHccchhhccCcceeeeEEEeeCcEEEEecCCCCeeeecCCCCCCCceeEEEeCCCc
Confidence 8999999999999977 6 999999999999999985 466899999999864
No 3
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=99.61 E-value=5e-16 Score=108.22 Aligned_cols=40 Identities=50% Similarity=0.821 Sum_probs=36.2
Q ss_pred ccCccccceEEeecCCCCEEeeeCCCCCCcccEEEeCCcc
Q psy16532 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKF 79 (84)
Q Consensus 40 r~~t~k~G~lVG~D~fGNKYYE~~~~~~GRrRWViY~~~~ 79 (84)
+++++|.|.|||+|+|||||||++....|++|||||++..
T Consensus 3 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~rrRWV~Y~~~~ 42 (115)
T PLN03095 3 LVLASRAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADKD 42 (115)
T ss_pred ceeeeecceEeEEcCCCCeeeEcCCCCCCCeEEEEeCCCc
Confidence 4678999999999999999999987777899999999864
No 4
>PRK06630 hypothetical protein; Provisional
Probab=99.56 E-value=1.5e-15 Score=104.05 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=33.7
Q ss_pred ccCccccceEEeecCCCCEEeeeCC--CCCCcccEEEeCCcc
Q psy16532 40 RTDDLKFGTLVGVDKLGNKYYENKH--YFYGRNRWVVYHEKF 79 (84)
Q Consensus 40 r~~t~k~G~lVG~D~fGNKYYE~~~--~~~GRrRWViY~~~~ 79 (84)
.+++++.|+|||+|+|||+|||+.. ...+++|||||++..
T Consensus 6 ~~~t~r~G~lVG~D~~GNkYYE~~~~~~~gr~rRWViY~g~~ 47 (99)
T PRK06630 6 KFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYKNVN 47 (99)
T ss_pred hhhhhccCeEeEEeCCCChhcccCCCccCCCceEEEEeCCCC
Confidence 5788999999999999999999964 333569999999854
No 5
>PRK08183 NADH dehydrogenase; Validated
Probab=99.54 E-value=3.7e-15 Score=105.74 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=41.7
Q ss_pred ccchhHHHhhhhccCccccceEEeecCCCCEEeeeCCC---CCCcccEEEeCCcc
Q psy16532 28 CTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHY---FYGRNRWVVYHEKF 79 (84)
Q Consensus 28 c~~~~~~~~~L~r~~t~k~G~lVG~D~fGNKYYE~~~~---~~GRrRWViY~~~~ 79 (84)
-++||....--.+++++|.|+|||+|++||||||+++. ..+++|||+|++..
T Consensus 7 if~ww~g~t~~t~~~~~r~g~lVG~D~~GNkYYE~~~~~~~~~~~rRWV~Y~~~~ 61 (133)
T PRK08183 7 IFTWWNGQTLGTRFFTWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGYA 61 (133)
T ss_pred HHHHhccCchhheeehhccCeEeEecCCCCeeeecCCccccCCCceEEEEeCCCC
Confidence 35666665555678899999999999999999999873 34579999999854
No 6
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=99.43 E-value=1.2e-13 Score=93.05 Aligned_cols=33 Identities=58% Similarity=0.900 Sum_probs=29.5
Q ss_pred ceEEeecCCCCEEeeeC-CCCCCcccEEEeCCcc
Q psy16532 47 GTLVGVDKLGNKYYENK-HYFYGRNRWVVYHEKF 79 (84)
Q Consensus 47 G~lVG~D~fGNKYYE~~-~~~~GRrRWViY~~~~ 79 (84)
|+|||+|+|||+|||++ ....+++|||+|++..
T Consensus 1 G~lVG~D~~GN~YyE~~~~~~~~~rRwV~y~~~~ 34 (105)
T PF05071_consen 1 GTLVGTDEFGNKYYENPRDEQGRRRRWVEYAGKS 34 (105)
T ss_pred CCEeeEeCCCCEEEeecCCCcCCCcEEEEcCCcc
Confidence 78999999999999999 4566789999999876
No 7
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=99.14 E-value=1.4e-11 Score=86.39 Aligned_cols=36 Identities=42% Similarity=0.749 Sum_probs=30.0
Q ss_pred ccceEEeecCCCCEEeee-CCCCCCc-ccEEEeCCccc
Q psy16532 45 KFGTLVGVDKLGNKYYEN-KHYFYGR-NRWVVYHEKFG 80 (84)
Q Consensus 45 k~G~lVG~D~fGNKYYE~-~~~~~GR-rRWViY~~~~~ 80 (84)
++-+.||+|+|||.|||. .....|| ||||||++.++
T Consensus 11 rfh~kvGeDefgN~Yye~r~~ds~gr~RRwVIYngyaE 48 (118)
T COG3761 11 RFHKKVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGYAE 48 (118)
T ss_pred HHHHhccchhccceeeeccCCccCCCeeeEEEEcCcch
Confidence 345899999999999998 4456676 99999999765
No 8
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=93.84 E-value=0.029 Score=32.51 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=13.2
Q ss_pred eEEeecCCCCEEeee
Q psy16532 48 TLVGVDKLGNKYYEN 62 (84)
Q Consensus 48 ~lVG~D~fGNKYYE~ 62 (84)
+.+|.|.+||+||--
T Consensus 3 ~pLG~DR~~NrYwwf 17 (38)
T PF15613_consen 3 KPLGKDRYGNRYWWF 17 (38)
T ss_pred ccccccCCCceEEEE
Confidence 568999999999974
No 9
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=42.28 E-value=19 Score=25.70 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.2
Q ss_pred ccce--EEeecCCCCEEeeeC
Q psy16532 45 KFGT--LVGVDKLGNKYYENK 63 (84)
Q Consensus 45 k~G~--lVG~D~fGNKYYE~~ 63 (84)
..|+ ++|+|++||.=|--.
T Consensus 48 d~G~l~y~G~De~gn~VY~lG 68 (148)
T PF11385_consen 48 DIGRLIYMGTDEYGNEVYILG 68 (148)
T ss_pred cCceEEEEEEcCCCCEEEEEe
Confidence 4565 599999999998754
No 10
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=41.18 E-value=17 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.6
Q ss_pred ccceEEeecCCCCEEeee
Q psy16532 45 KFGTLVGVDKLGNKYYEN 62 (84)
Q Consensus 45 k~G~lVG~D~fGNKYYE~ 62 (84)
-.|.|+|.|+|.|-=-++
T Consensus 23 ~~G~L~~~D~~~NlVL~~ 40 (79)
T cd01717 23 FVGQFLAFDKHMNLVLSD 40 (79)
T ss_pred EEEEEEEEcCccCEEcCC
Confidence 379999999999976444
No 11
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=34.72 E-value=31 Score=19.11 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=13.8
Q ss_pred cceEEeecCCCCEEeee
Q psy16532 46 FGTLVGVDKLGNKYYEN 62 (84)
Q Consensus 46 ~G~lVG~D~fGNKYYE~ 62 (84)
.+.-|..|..||-|--.
T Consensus 14 ~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 46779999999998653
No 12
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=33.55 E-value=26 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.1
Q ss_pred ccceEEeecCCCCEEeeeC
Q psy16532 45 KFGTLVGVDKLGNKYYENK 63 (84)
Q Consensus 45 k~G~lVG~D~fGNKYYE~~ 63 (84)
..|+|+|.|+++|-=-.+-
T Consensus 23 ~~G~l~~~D~~~NivL~~~ 41 (75)
T cd06168 23 LVGVFLCTDRDCNIILGSA 41 (75)
T ss_pred EEEEEEEEcCCCcEEecCc
Confidence 3699999999999875543
No 13
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=31.70 E-value=28 Score=20.41 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=17.2
Q ss_pred ccccceEEeecCCCCEEeeeC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENK 63 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~ 63 (84)
..-.|.|++.|++.|-.-++-
T Consensus 19 ~~~~G~L~~~D~~~NlvL~~~ 39 (67)
T smart00651 19 REYRGTLKGFDQFMNLVLEDV 39 (67)
T ss_pred cEEEEEEEEECccccEEEccE
Confidence 445799999999999987654
No 14
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.39 E-value=42 Score=19.27 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=17.2
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.+++.|++.|---.+..
T Consensus 17 ~~~~G~L~~~D~~~Ni~L~~~~ 38 (63)
T cd00600 17 RVLEGVLVAFDKYMNLVLDDVE 38 (63)
T ss_pred cEEEEEEEEECCCCCEEECCEE
Confidence 3447999999999998776643
No 15
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=26.45 E-value=40 Score=20.90 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.1
Q ss_pred ccceEEeecCCCCEEeeeCC
Q psy16532 45 KFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 45 k~G~lVG~D~fGNKYYE~~~ 64 (84)
-.|.|.|-|+|.|--=++..
T Consensus 22 ~~G~L~~~D~~~NlvL~~~~ 41 (74)
T cd01727 22 IVGTLKGFDQATNLILDDSH 41 (74)
T ss_pred EEEEEEEEccccCEEccceE
Confidence 36899999999998777643
No 16
>smart00604 MD MD domain.
Probab=24.49 E-value=49 Score=24.19 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=10.5
Q ss_pred eEEeecCCCCEE
Q psy16532 48 TLVGVDKLGNKY 59 (84)
Q Consensus 48 ~lVG~D~fGNKY 59 (84)
.++|.|++||.|
T Consensus 131 ~i~G~D~~G~~F 142 (145)
T smart00604 131 LIDGVDENGYNF 142 (145)
T ss_pred EEEeecCCCcee
Confidence 568999999987
No 17
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=23.08 E-value=51 Score=21.02 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=14.1
Q ss_pred cccceEEeecCCCCEEee
Q psy16532 44 LKFGTLVGVDKLGNKYYE 61 (84)
Q Consensus 44 ~k~G~lVG~D~fGNKYYE 61 (84)
.-.|.|+|-|+|-|-==+
T Consensus 24 ~~~G~L~~~D~~mNlvL~ 41 (81)
T cd01729 24 EVTGILKGYDQLLNLVLD 41 (81)
T ss_pred EEEEEEEEEcCcccEEec
Confidence 347999999999996544
No 18
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=21.83 E-value=1.3e+02 Score=15.15 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=17.2
Q ss_pred ceEEeecCCCCEEeeeCCCCCCcccEEEe
Q psy16532 47 GTLVGVDKLGNKYYENKHYFYGRNRWVVY 75 (84)
Q Consensus 47 G~lVG~D~fGNKYYE~~~~~~GRrRWViY 75 (84)
|-.+-.|..|..||-+... ++.+|..+
T Consensus 4 gW~~~~~~~g~~yy~n~~t--~~s~W~~P 30 (32)
T smart00456 4 GWEERKDPDGRPYYYNHET--KETQWEKP 30 (32)
T ss_pred CCEEEECCCCCEEEEECCC--CCEEcCCC
Confidence 3445566669999998642 45666543
No 19
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=21.58 E-value=50 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=18.3
Q ss_pred hhhhccCcccc-ceEEeecCCCCEEee
Q psy16532 36 ESSDRTDDLKF-GTLVGVDKLGNKYYE 61 (84)
Q Consensus 36 ~~L~r~~t~k~-G~lVG~D~fGNKYYE 61 (84)
..+|.+--..+ =-+|..|.+||..|+
T Consensus 141 EAi~~leVedfGPliV~iDs~Gn~ly~ 167 (168)
T TIGR00723 141 EAIWELEVEDFGPLIVAIDSHGNSIFQ 167 (168)
T ss_pred cEEEEEEEecceeEEEEEECCCCcccc
Confidence 44455544445 346999999999986
No 20
>KOG0909|consensus
Probab=21.22 E-value=40 Score=29.12 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=42.9
Q ss_pred cccccceecccCCCCCCchhhhhccccchhHHHhhhhccCccccceE-EeecCCCCEEeeeCCCCCCcccEEEe
Q psy16532 3 SCDQETQFVSNCSDHENDETCRKKRCTDRYDSSESSDRTDDLKFGTL-VGVDKLGNKYYENKHYFYGRNRWVVY 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~k~c~~~~~~~~~L~r~~t~k~G~l-VG~D~fGNKYYE~~~~~~GRrRWViY 75 (84)
.|.+++.|--- .|...=-.-||-|||-|-.-|.-|++.+.....-. =-+|+-=+-+|.+.. .|||--
T Consensus 199 ~C~~~~RFPRY-Ndp~kLLeTRkGRCGEWANCFTllcralg~daR~i~d~tDHVWtEvYS~~q-----qRW~Hv 266 (500)
T KOG0909|consen 199 RCGTETRFPRY-NDPIKLLETRKGRCGEWANCFTLLCRALGLDARYIWDRTDHVWTEVYSNAQ-----QRWVHV 266 (500)
T ss_pred CCCCcccCccc-CCHHHHHhhccCccchHHHHHHHHHHHcCCcceEEeecCcchhHHhhhhhh-----heeEee
Confidence 46666666321 12222235699999999999999999887644322 246776666666543 788743
No 21
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=20.99 E-value=35 Score=25.88 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=26.7
Q ss_pred ccccchhH-HHhhhhccCccccceEEeecCCCCEEeeeC
Q psy16532 26 KRCTDRYD-SSESSDRTDDLKFGTLVGVDKLGNKYYENK 63 (84)
Q Consensus 26 k~c~~~~~-~~~~L~r~~t~k~G~lVG~D~fGNKYYE~~ 63 (84)
-+|--|.+ -...+|.+---..--+|..|..||.+|+..
T Consensus 138 ~~~v~~~dLGmEAiw~leVe~fPliV~iDs~Gn~~~~~~ 176 (184)
T COG1838 138 VRCVAYEDLGMEAIWELEVEDFPLIVAIDSKGNSLFKEG 176 (184)
T ss_pred eeeEeecccChhheeEEEeccccEEEEEeCCCcChhhhc
Confidence 45666655 335555555555667899999999999864
No 22
>PRK08395 fumarate hydratase; Provisional
Probab=20.37 E-value=54 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.3
Q ss_pred hhhhccCccccceEEeecCCCCEEee
Q psy16532 36 ESSDRTDDLKFGTLVGVDKLGNKYYE 61 (84)
Q Consensus 36 ~~L~r~~t~k~G~lVG~D~fGNKYYE 61 (84)
..+|.+--..+=-+|+.|.+||..|+
T Consensus 137 EAi~~leVedfP~iV~iDs~Gn~ly~ 162 (162)
T PRK08395 137 DAVWELEVEDFPLLVAIDSKGRSLYR 162 (162)
T ss_pred cEEEEEEEecCcEEEEEeCCCCcccC
Confidence 44555544445568999999999885
Done!