Query psy16532
Match_columns 84
No_of_seqs 104 out of 375
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 23:41:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d3b_B Protein (small nuclear 31.4 19 0.00064 22.0 1.3 21 43-63 25-45 (91)
2 3s6n_G Small nuclear ribonucle 26.3 28 0.00097 20.6 1.4 22 43-64 25-46 (76)
3 1h64_1 SnRNP SM-like protein; 25.7 30 0.001 20.3 1.4 23 42-64 24-46 (75)
4 1i4k_A Putative snRNP SM-like 22.8 37 0.0013 19.9 1.4 23 42-64 24-46 (77)
5 1th7_A SnRNP-2, small nuclear 22.0 38 0.0013 20.2 1.4 22 43-64 30-51 (81)
6 3bw1_A SMX4 protein, U6 snRNA- 21.2 40 0.0014 21.0 1.4 21 43-63 31-51 (96)
7 1mgq_A SM-like protein; LSM, R 20.4 43 0.0015 20.1 1.4 23 42-64 35-57 (83)
8 1i8f_A Putative snRNP SM-like 20.3 44 0.0015 20.0 1.4 22 43-64 32-53 (81)
9 1ljo_A Archaeal SM-like protei 20.0 45 0.0015 19.6 1.4 22 43-64 27-48 (77)
10 4emk_B U6 snRNA-associated SM- 19.6 40 0.0014 19.8 1.1 23 42-64 24-46 (75)
No 1
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=31.44 E-value=19 Score=21.97 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=16.7
Q ss_pred ccccceEEeecCCCCEEeeeC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENK 63 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~ 63 (84)
..-.|.|+|.|+|.|---++-
T Consensus 25 r~~~G~L~~~D~~mNlvL~d~ 45 (91)
T 1d3b_B 25 RIFIGTFKAFDKHMNLILCDC 45 (91)
T ss_dssp CEEEEEEEECCTTCCEEEEEE
T ss_pred eEEEEEEEEECCCCeEEecCE
Confidence 444799999999999776654
No 2
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=26.34 E-value=28 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=17.8
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|+|.|++-|---++-.
T Consensus 25 r~~~G~L~~~D~~mNlvL~~~~ 46 (76)
T 3s6n_G 25 RHVQGILRGFDPFMNLVIDECV 46 (76)
T ss_dssp EEEEEEEEEECTTCCEEEEEEE
T ss_pred cEEEEEEEEECCcceEEEeceE
Confidence 3447999999999999887654
No 3
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=25.65 E-value=30 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=18.1
Q ss_pred CccccceEEeecCCCCEEeeeCC
Q psy16532 42 DDLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 42 ~t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
+..-.|.|+|.|++-|---++-.
T Consensus 24 g~~~~G~L~~~D~~mNlvL~d~~ 46 (75)
T 1h64_1 24 GFEFRGRLIGYDIHLNVVLADAE 46 (75)
T ss_dssp SEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEEeCCCCeEEeeEE
Confidence 34447999999999998877654
No 4
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=22.77 E-value=37 Score=19.90 Aligned_cols=23 Identities=26% Similarity=0.052 Sum_probs=18.0
Q ss_pred CccccceEEeecCCCCEEeeeCC
Q psy16532 42 DDLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 42 ~t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
+..-.|.|+|.|++-|---++-.
T Consensus 24 g~~~~G~L~~~D~~mNlvL~d~~ 46 (77)
T 1i4k_A 24 GREFRGTLDGYDIHMNLVLLDAE 46 (77)
T ss_dssp SCEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCeEEeeEE
Confidence 34457999999999998877643
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=22.03 E-value=38 Score=20.18 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=17.6
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|+|.|++-|---++-.
T Consensus 30 ~~~~G~L~~~D~~mNlvL~d~~ 51 (81)
T 1th7_A 30 KEVRGMLRSYDQHMNLVLSDSE 51 (81)
T ss_dssp EEEEEEEEEECTTCCEEEEEEE
T ss_pred cEEEEEEEEEcCCCCEEEccEE
Confidence 4447999999999998877654
No 6
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=21.20 E-value=40 Score=21.01 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=16.3
Q ss_pred ccccceEEeecCCCCEEeeeC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENK 63 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~ 63 (84)
..-.|.|+|.|+|-|---++-
T Consensus 31 r~~~G~L~~fD~~mNlVL~d~ 51 (96)
T 3bw1_A 31 RTLVGTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp CEEEEEEEEECTTCCEEEEEE
T ss_pred cEEEEEEEEECCCCcEEEcCE
Confidence 344799999999999766653
No 7
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=20.41 E-value=43 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=18.3
Q ss_pred CccccceEEeecCCCCEEeeeCC
Q psy16532 42 DDLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 42 ~t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
+..-.|.|+|.|++-|---++-.
T Consensus 35 g~~~~G~L~~~D~~mNlvL~d~~ 57 (83)
T 1mgq_A 35 DREFRGVLKSFDLHMNLVLNDAE 57 (83)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEE
T ss_pred CcEEEEEEEEECCCceeEEccEE
Confidence 34457999999999998887754
No 8
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=20.32 E-value=44 Score=19.97 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=17.2
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|+|.|+|-|---++-.
T Consensus 32 ~~~~G~L~~~D~~mNlvL~d~~ 53 (81)
T 1i8f_A 32 HEIRGILRSFDQHVNLLLEDAE 53 (81)
T ss_dssp EEEEEEEEEECTTCCEEEEEEE
T ss_pred cEEEEEEEEEcCCCeeEEccEE
Confidence 4447999999999997766543
No 9
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=19.97 E-value=45 Score=19.60 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=17.7
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|+|-|+|-|---++-.
T Consensus 27 ~~~~G~L~~~D~~mNlvL~d~~ 48 (77)
T 1ljo_A 27 NQLVGKLEGVDDYMNLYLTNAM 48 (77)
T ss_dssp SEEEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEEEEECCcceEEEeeEE
Confidence 4457999999999998877654
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=19.61 E-value=40 Score=19.84 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=18.1
Q ss_pred CccccceEEeecCCCCEEeeeCC
Q psy16532 42 DDLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 42 ~t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
+..-.|.|+|.|+|-|---++-.
T Consensus 24 g~~~~G~L~~~D~~mNlvL~d~~ 46 (75)
T 4emk_B 24 GVDYKGILSCLDGYMNLALERTE 46 (75)
T ss_dssp SCEEEEEEEEECTTCEEEEEEEE
T ss_pred CcEEEEEEEEEcCcceEEEccEE
Confidence 34457999999999998877654
Done!