Query psy16532
Match_columns 84
No_of_seqs 104 out of 375
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 23:41:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16532.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16532hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3bb_ b.38.1.1 (B:) B core S 45.9 3.8 0.00027 23.6 1.3 19 44-62 20-38 (81)
2 d1h641_ b.38.1.1 (1:) Archaeal 33.3 8.6 0.00063 21.2 1.4 22 43-64 23-44 (71)
3 d1x63a1 g.39.1.3 (A:8-44) Four 31.0 8.3 0.00061 20.1 1.0 13 70-82 22-34 (37)
4 d1i4k1_ b.38.1.1 (1:) Archaeal 30.8 10 0.00073 21.1 1.4 22 43-64 24-45 (72)
5 d1i8fa_ b.38.1.1 (A:) Archaeal 26.9 13 0.00094 20.7 1.4 21 44-64 24-44 (71)
6 d2fwka1 b.38.1.1 (A:24-115) U6 26.1 15 0.0011 21.1 1.7 21 44-64 27-47 (92)
7 d1mgqa_ b.38.1.1 (A:) Archaeal 25.0 15 0.0011 20.4 1.4 23 42-64 26-48 (74)
8 d1th7a1 b.38.1.1 (A:3-78) Arch 23.1 17 0.0012 20.3 1.4 22 43-64 28-49 (76)
9 d2ieaa3 c.48.1.1 (A:701-886) P 21.5 20 0.0015 23.3 1.8 12 45-56 118-129 (186)
10 d1ljoa_ b.38.1.1 (A:) Archaeal 20.4 20 0.0015 20.1 1.4 20 45-64 29-48 (75)
No 1
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.91 E-value=3.8 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.5
Q ss_pred cccceEEeecCCCCEEeee
Q psy16532 44 LKFGTLVGVDKLGNKYYEN 62 (84)
Q Consensus 44 ~k~G~lVG~D~fGNKYYE~ 62 (84)
...|.|+|.|+++|-=-++
T Consensus 20 ~~~G~L~~~D~~~NlvL~~ 38 (81)
T d1d3bb_ 20 IFIGTFKAFDKHMNLILCD 38 (81)
T ss_dssp EEEEEEEECCTTCCEEEEE
T ss_pred EEEEEEEEECCccCEEEcC
Confidence 3479999999999986664
No 2
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=33.29 E-value=8.6 Score=21.18 Aligned_cols=22 Identities=23% Similarity=0.073 Sum_probs=17.8
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|++.|++.|-.-.+-.
T Consensus 23 ~~~~G~L~~~D~~mNlvL~~~~ 44 (71)
T d1h641_ 23 FEFRGRLIGYDIHLNVVLADAE 44 (71)
T ss_dssp EEEEEEEEEECTTCCEEEEEEE
T ss_pred CEEEEEEEEECCCCCeEEeeEE
Confidence 3447999999999999887653
No 3
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.03 E-value=8.3 Score=20.06 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=11.3
Q ss_pred ccEEEeCCccccc
Q psy16532 70 NRWVVYHEKFGLN 82 (84)
Q Consensus 70 rRWViY~~~~~~~ 82 (84)
-|+|+|++..|++
T Consensus 22 ~k~veykg~~WHe 34 (37)
T d1x63a1 22 DQNVEYKGTVWHK 34 (37)
T ss_dssp SCEEECSSCEEET
T ss_pred CeEeEeCCccchh
Confidence 8999999998765
No 4
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=30.83 E-value=10 Score=21.06 Aligned_cols=22 Identities=27% Similarity=0.052 Sum_probs=18.0
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|.|.|++.|-.-++-.
T Consensus 24 ~~~~G~L~~~D~~mNlvL~~~~ 45 (72)
T d1i4k1_ 24 REFRGTLDGYDIHMNLVLLDAE 45 (72)
T ss_dssp CEEEEEEEEECTTCCEEEEEEE
T ss_pred CEEEEEEEEEcCCCCeEEeeEE
Confidence 3447999999999999988653
No 5
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=26.87 E-value=13 Score=20.73 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.2
Q ss_pred cccceEEeecCCCCEEeeeCC
Q psy16532 44 LKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 44 ~k~G~lVG~D~fGNKYYE~~~ 64 (84)
.-.|.|++.|++.|---++-.
T Consensus 24 ~~~G~L~~~D~~mNivL~~~~ 44 (71)
T d1i8fa_ 24 EIRGILRSFDQHVNLLLEDAE 44 (71)
T ss_dssp EEEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEEEECCCcceEEccEE
Confidence 347999999999998887653
No 6
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=26.11 E-value=15 Score=21.11 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.2
Q ss_pred cccceEEeecCCCCEEeeeCC
Q psy16532 44 LKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 44 ~k~G~lVG~D~fGNKYYE~~~ 64 (84)
.-.|.|++.|+|.|---++-.
T Consensus 27 ~~~G~L~~~D~~~NlvL~d~~ 47 (92)
T d2fwka1 27 EFSGVLRGFDEYVNMVLDDVQ 47 (92)
T ss_dssp EECCEEEEECTTCCEEEESCC
T ss_pred EEEEEEEEEcCCCCEEEeeEE
Confidence 347999999999998877654
No 7
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.99 E-value=15 Score=20.42 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=18.5
Q ss_pred CccccceEEeecCCCCEEeeeCC
Q psy16532 42 DDLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 42 ~t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
+..-.|.|++.|++.|-.-++-.
T Consensus 26 g~~~~G~L~~~D~~mNl~L~~~~ 48 (74)
T d1mgqa_ 26 DREFRGVLKSFDLHMNLVLNDAE 48 (74)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEECCCCCeEEeeEE
Confidence 34457999999999999888754
No 8
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=23.09 E-value=17 Score=20.31 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=17.8
Q ss_pred ccccceEEeecCCCCEEeeeCC
Q psy16532 43 DLKFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 43 t~k~G~lVG~D~fGNKYYE~~~ 64 (84)
..-.|.|+|.|++.|---++-.
T Consensus 28 ~~~~G~L~~~D~~mNlvL~~~~ 49 (76)
T d1th7a1 28 KEVRGMLRSYDQHMNLVLSDSE 49 (76)
T ss_dssp EEEEEEEEEECTTCCEEEEEEE
T ss_pred CEEEEEEEEECCCCCEEEeEEE
Confidence 4447999999999999887653
No 9
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}
Probab=21.54 E-value=20 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.1
Q ss_pred ccceEEeecCCC
Q psy16532 45 KFGTLVGVDKLG 56 (84)
Q Consensus 45 k~G~lVG~D~fG 56 (84)
..+..+|+|.||
T Consensus 118 ~~~~~LG~d~FG 129 (186)
T d2ieaa3 118 DDYRVLGTDGFG 129 (186)
T ss_dssp SCEEEECCCSCB
T ss_pred CCcEEEEeCCcC
Confidence 456789999998
No 10
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=20.43 E-value=20 Score=20.08 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=17.0
Q ss_pred ccceEEeecCCCCEEeeeCC
Q psy16532 45 KFGTLVGVDKLGNKYYENKH 64 (84)
Q Consensus 45 k~G~lVG~D~fGNKYYE~~~ 64 (84)
-.|.|.|-|+|-|---++-.
T Consensus 29 ~~G~L~~~D~~mNlvL~~~~ 48 (75)
T d1ljoa_ 29 LVGKLEGVDDYMNLYLTNAM 48 (75)
T ss_dssp EEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEeEEE
Confidence 47999999999999888754
Done!