RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16532
         (84 letters)



>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit
          NDUFA12.  This family contains the 17.2 kD subunit of
          complex I (NDUFA12) and its homologues. The family also
          contains a second related eukaryotic protein of unknown
          function, .
          Length = 100

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 21/33 (63%), Positives = 24/33 (72%)

Query: 47 GTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKF 79
          GTLVG D+ GNKYYENK    GR RWV+Y+ K 
Sbjct: 1  GTLVGEDEFGNKYYENKDELGGRRRWVIYNGKA 33


>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa
          subunit; Provisional.
          Length = 115

 Score = 54.1 bits (130), Expect = 4e-11
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 45 KFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLN 82
          + G LVG D+ GNKYYEN  Y  GR+RWV Y +K   N
Sbjct: 8  RAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADKDDYN 45


>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1
          alpha subcomplex subunit.
          Length = 159

 Score = 46.8 bits (111), Expect = 4e-08
 Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 48 TLVGVDKLGNKYYENKH-YFYGRNRWVVYHEK 78
          TLVGVDK GNKYY+      YGR+RWV Y EK
Sbjct: 50 TLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEK 81


>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated.
          Length = 133

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 45 KFGTLVGVDKLGNKYYENK---HYFYGRNRWVVY 75
          + G  VG D+ GN YY  K          RWV+Y
Sbjct: 24 RKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIY 57


>gnl|CDD|226284 COG3761, COG3761, NADH:ubiquinone oxidoreductase 17.2 kD subunit
          [Energy production and conversion].
          Length = 118

 Score = 31.1 bits (70), Expect = 0.022
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 39 DRTDDLKFGTLVGVDKLGNKYYENKHY-FYGRN-RWVVY 75
          ++T   +F   VG D+ GN YYE ++    GR  RWV+Y
Sbjct: 5  NQTFGTRFHKKVGEDEFGNVYYEGRNIDSEGRTRRWVIY 43


>gnl|CDD|234544 TIGR04325, MTase_LIC12133, putative methyltransferase, LIC12133
          family.  Members of this family tend to occur next to
          glycosyltransferases and other characteristic enzymes
          of O-antigen biosynthetic regions. The founding member
          is LIC12133 from Leptospira interrogans serovar
          Copenhageni. PSI-BLAST reveals distant homology to
          known SAM-dependent methyltransferases, as in
          pfam13489.
          Length = 235

 Score = 27.6 bits (62), Expect = 0.69
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 55 LGNKYYENKHYFYGRN--RWVVY 75
          LG+ YY+ K +    +  RW V 
Sbjct: 76 LGSTYYQYKRFLPLPDGLRWTVV 98


>gnl|CDD|168631 PRK06630, PRK06630, hypothetical protein; Provisional.
          Length = 99

 Score = 25.3 bits (55), Expect = 3.1
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 46 FGTLVGVDKLGNKYYENKHYFY-GR-NRWVVY 75
          F   VG D+  N+YYE+++  Y GR  R+V+Y
Sbjct: 12 FHKKVGEDEFLNQYYESRNIDYLGRPRRFVIY 43


>gnl|CDD|177659 PLN00021, PLN00021, chlorophyllase.
          Length = 313

 Score = 25.4 bits (56), Expect = 3.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 38  SDRTDDLKFGTLVGVD 53
           +  +  LKF  L+G+D
Sbjct: 148 AAVSLPLKFSALIGLD 163


>gnl|CDD|177546 PHA03151, PHA03151, hypothetical protein; Provisional.
          Length = 259

 Score = 25.5 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 15  SDHENDETCRKKRCTDRYDSSESSD 39
           SD E     R+KR + R  SS  SD
Sbjct: 209 SDDEPPRKSRRKRHSHRISSSTDSD 233


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,976,973
Number of extensions: 286331
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 13
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)