RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16532
         (84 letters)



>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function,
           PSI, protein structure initiative; 2.00A {Bacillus
           subtilis} SCOP: c.129.1.2
          Length = 181

 Score = 25.9 bits (57), Expect = 1.6
 Identities = 5/25 (20%), Positives = 12/25 (48%)

Query: 52  VDKLGNKYYENKHYFYGRNRWVVYH 76
              L ++ YE+   F  +N++ +  
Sbjct: 106 EASLTHRPYESPLQFKQKNQFFIDK 130


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 2.9
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 24/72 (33%)

Query: 17  HENDETCRKKRCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYH 76
              +E    +   D Y+  ++ D  D            L   Y +   YFY     + +H
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDD------------LIPPYLDQ--YFY---SHIGHH 480

Query: 77  -------EKFGL 81
                  E+  L
Sbjct: 481 LKNIEHPERMTL 492


>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR
          of basic residues, glycoprotein, protease, secreted;
          HET: STA; 2.50A {Candida albicans}
          Length = 342

 Score = 24.6 bits (54), Expect = 4.4
 Identities = 5/29 (17%), Positives = 7/29 (24%), Gaps = 2/29 (6%)

Query: 12 SNCSDHENDETCRKKRCTD--RYDSSESS 38
          SN          +   C     Y  + S 
Sbjct: 43 SNVICIPKWRGDKGDFCKSAGSYSPASSR 71


>3fub_A GDNF family receptor alpha-1; gfralpha1, all alpha GDNF, cystine
          knot, cell membrane, GLYC GPI-anchor, lipoprotein,
          membrane; HET: NAG; 2.35A {Rattus norvegicus}
          Length = 281

 Score = 24.1 bits (51), Expect = 7.1
 Identities = 4/23 (17%), Positives = 14/23 (60%)

Query: 6  QETQFVSNCSDHENDETCRKKRC 28
            + +++ C+   ++E C +++C
Sbjct: 26 YRSAYITPCTTSMSNEVCNRRKC 48


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,257,476
Number of extensions: 56305
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)